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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006252 ID=TCONS_00006252|Name=TCONS_00006252|organism=Clytia hemisphaerica|type=transcript|length=1621bpRun BLAST on NCBI protein sequence of TCONS_00006252-protein >TCONS_00006252-protein ID=TCONS_00006252-protein|Name=TCONS_00006252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp MVDVATARRKLMEALGEYSEKYWNNMKLWYKQKITKDDFDTQAFELLGPGRun BLAST on NCBI transcript from alignment at sc0000066:286314..310104+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006252 ID=TCONS_00006252|Name=TCONS_00006252|organism=Clytia hemisphaerica|type=transcript|length=23791bp|location=Sequence derived from alignment at sc0000066:286314..310104+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000066:286314..310104+ >TCONS_00006252 ID=TCONS_00006252|Name=TCONS_00006252|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at sc0000066:286314..310104+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006252 vs. Swiss-Prot (Human)
Match: TADA1 (Transcriptional adapter 1 OS=Homo sapiens GN=TADA1 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.189e-25 Identity = 64/192 (33.33%), Postives = 113/192 (58.85%), Query Frame = 2
Query: 446 DEHDVKLCTQNLVLPDVATLYGRLYLGALDAELEQISDESAHLLVSAVETHLKNILTACVSRRKPFKIRSGSHFQHRYGSSHIKTLLLNNSL--------SKPRD----AKQRFQTY---EQAEAECYARFA-AGEVRNSVLPPISLPDLRDTILEKKDTIPSHTVRAGNMERVLANSWHPDIDETKQNELY 973
D+ D+KLC+ ++LP L GR+ + A + L+ +++E+ +V AVE HLK+ILT+ VSRRK +++R G HF++ +GS+ L NS+ S P A Q ++ + AE + A +G+ + LPP+++ DL + + ++ IP+HTV A N+ER++ WHP+ +E +Q++++
Sbjct: 132 DDDDLKLCSHTMMLPTRGQLEGRMIVTAYEHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDG-HFKYAFGSNVTPQPYLKNSVVAYNNLIESPPAFTAPCAGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVNMYDLFEALQVHREVIPTHTVYALNIERIITKLWHPNHEELQQDKVH 322 The following BLAST results are available for this feature:
BLAST of TCONS_00006252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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