TCONS_00006252-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006252-protein
Unique NameTCONS_00006252-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006252-protein ID=TCONS_00006252-protein|Name=TCONS_00006252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MVDVATARRKLMEALGEYSEKYWNNMKLWYKQKITKDDFDTQAFELLGPG
KINYHNEFILSILAKCQSVAVSSPAPNQTKSQSKSTNRSVQLRKPRIKRP
SESTEIQTFEEVDHFRDTPTFIKRVMNTTLNYAHKTWCYRM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003573XLOC_003573Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006252TCONS_00006252Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024738Hfi1/Tada1
Vocabulary: Cellular Component
TermDefinition
GO:0070461SAGA-type complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0070461 SAGA-type complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024738Transcriptional coactivator Hfi1/Transcriptional adapter 1PFAMPF12767SAGA-Tad1coord: 2..103
e-value: 5.4E-14
score: 52.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..103

Blast
[Close]
BLAST of TCONS_00006252-protein vs. Swiss-Prot (Human)
Match: TADA1 (Transcriptional adapter 1 OS=Homo sapiens GN=TADA1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.993e-18
Identity = 33/72 (45.83%), Postives = 54/72 (75.00%), Query Frame = 0 
Query:    3 DVATARRKLMEALGEYSEKYWNNMKLWYKQKITKDDFDTQAFELLGPGKINYHNEFILSILAKCQSVAVSSP 74
            ++  A++ L EALG+  ++YW N+KLW+KQKI+K++FD +A  LL    ++ HN+F+L+IL +CQ + VS+P
Sbjct:    7 ELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFDLEAHRLLTQDNVHSHNDFLLAILTRCQ-ILVSTP 77
The following BLAST results are available for this feature:
BLAST of TCONS_00006252-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TADA15.993e-1845.83Transcriptional adapter 1 OS=Homo sapiens GN=TADA1... [more]
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