TCONS_00006239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006239
Unique NameTCONS_00006239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006239 ID=TCONS_00006239|Name=TCONS_00006239|organism=Clytia hemisphaerica|type=transcript|length=1447bp
AATAAAGATTGGAATAAAGTTAATTATCGTGAATTTAAACTAGATTGCTA
CACAAATTGCACAGAGTGGGTGACTAGTAACcatttcaagaaaaatgatt
tATGTTTTGCAACGCAAAGACGTTTTTGTAATGACACTTTCactaatcaa
ataaacaaagttGAATATCATGAAATTCAGCAAGATTGCCCAAAAACATG
TTCGGCTTGGGAACAACTCAACCTTTATCAAAAAGGAGACAATTGTTACA
AAGACGAAATTCGTTCATGTAACATCTCAATACTGGAAAGTTTCAACAAC
AAAGAATATCGCCAATCTATATTCGATTGCAAAGACAATTGTACTGACTT
GATAACTTCATCAACTTTCGAACGTATTGGTTCGTGTTTTCTTTCAACAA
AAAAGACATGTGTGAATGAAGtattaaatatttcaagaaCTGAATACAAT
GAAACTGAAGTTGATTGTCCTACAATAGTAATTCCCACAGGTGCACCAAA
CAAAGGGGACCCAGGTAGTGATGATGAAGAGCTTTACAAATACATGTTGA
TTCCTGTGGGAGCTGTTTGTCTTATCATCGGCGTCGCTTTGGGTTGCATG
GGTCATCGATATCAGAATGTCAAGAATCGATGCAAGAATAATAACGTGTC
ACCAGAGATGAACCACAACAATGGACGCAACAGAGGTGGTGTAGCTAATC
CTTCTTACACGCCAGATTCCGTCATTATAAACGATACCCCTGAAATGATC
CGAAATGGTGGAATTTAATATGCAACAATGCTATTAGATGTTTAAGAGAT
TGTgtatctttcaaattttccctACAACTCatgtcaaattttgaaatact
ttgtAGTGCTGCATAACATGAATACTCATATCACTCTTCAGCATCGAAGC
ATGATCGTGAACAACTTTGAGTTGATTAAATTctgatgaaattttttaaa
ggaCGAGTTCCTTGTGTGTTTTGGAAATTTATATTTCAATCTTTAACTTG
AaatcttccttttctttttcttcgtaATCTCAAATTCTAATTATTTGCAC
TTTAACAAACAAGACTACTGTATTTATTAAGATTGTTTGCAAACGTCTCC
TTGACGACCTGTGTAGTCgctactttttttaaatttcaaaagatttgtgA
CTCTAACGTGTTTCGACTAAttcttttctcaatttttttaaactttttca
tcaTGTATATACAGGAcctattctttttctttttttatattataaaatca
tttttgagttatttatttctttattctAAGTTTTACTTGAGGTACTTTTT
ATACCAACACTACTAGTTGTAAAGATTAtcattttttaccaaaattattg
tatatattattttgaatatttaaaatttaaaacaggTTAGACCTTGAagg
ttattttaaatttttgcacttttaggtaaaaaaattaCATGTGAACG
Run BLAST on NCBI

transcript from alignment at sc0000066:269399..272606+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006239 ID=TCONS_00006239|Name=TCONS_00006239|organism=Clytia hemisphaerica|type=transcript|length=3208bp|location=Sequence derived from alignment at sc0000066:269399..272606+ (Clytia hemisphaerica)
AATAAAGATTGGAATAAAGTTAATTATCGTGAATTTAAACTAGGTATGGT
TTAACTTTGGTTTAAATTTAATTAAGGATTAATTCGAGCGccaaacttga
ttttttttttaattggtcAAGTTATTAAAAAACACAGtgttaaatttttt
aaacttttttattgttaaaactcttaagaaaaaagttttattttatttca
gcAAAAGATTTTCGGTAAAAAACTATCTTTAGTGCTAGTTGtttaaaatt
aaatgaaattcaaaaacatttatgCATTTTTTGTACATGGTGACGTTTAT
gttgtaaaaaatctgaaagGAGCTAGGTAAATTAAAAAGCTTTTGCTGAA
ATTAAATAAAAGTTATTATTTATACTCATTACTATCTTGAATGGCtgatt
taaaccaaaatatataaaaactgTTAACTTGTTCTTGCATTtactataaa
accaaacctaaaCTCCACATTTCACAGATTGCTACACAAATTGCACAGAG
TGGGTGACTAGTAACcatttcaagaaaaatgatttATGTTTTGCAACGCA
AAGACGTTTTTGTAATGACACTTTCactaatcaaataaacaaagttGAAT
ATCATGAAATTCAGCAAGGTAAAATTAAAGTTTAGTCATAACTAATCATG
AATGAGCATTTTGATTGCTTTATCTATTATTAACCTTATTAACCTATTAA
ACCATTATAAATTGTCTGATAAACACGATTAAGGTCAACTGGATTAAACC
TTCTTTTTTTTGCCATATTTTTAGCTTCATTGCAGATTAAACTAAAGAGA
AGccgttcttttaaatttttactgtttctattcacaattttatatttcaa
ccaccaaacctttttttttgcttgctttCAGATTGCCCAAAAACATGTTC
GGCTTGGGAACAACTCAACCTTTATCAAAAAGGAGACAATTGTTACAAAG
ACGAAATTCGTTCATGTAACATCTCAATACTGGAAAGTTTCAACAACAAA
GAATATCGCCAATCTATATTCGGTAAACTATTGGAAGATGATTCTCATAT
TTCACAACAACTGTAAAATATTTGCCTGTCTAATTTTTGAGTCTTAATAC
CCTTTTAGTTTTTATTCCCTCAGTCCAGCATTGATCGACTTTTGAATCGC
CTTATACAAACCTGTTTTAAAATTGTAGCTGTCTATTTTTCCagctttaa
attcaaaactgtCGCACCACTTCTAGATTGCGCAGACGTTCCATTTTAAG
TCTAGGATTGAtcgatgttttgaaattttagctaCGGCTATTCTCCTTTA
TTCACACCCGTTGGACCATTTTTAGATTGCAAAGACAATTGTACTGACTT
GATAACTTCATCAACTTTCGAACGTATTGGTTCGTGTTTTCTTTCAACAA
AAAAGACATGTGTGAATGAAGtattaaatatttcaagaaCTGAATACAAT
GAAACTGAAGTTGATTGTCCTACAATAGTAATTCCCACAGGTATAGTTTT
GTTTCTTTATTCTCAGAATCTTTTTTACTTTCCAAGTTTTAGATTAAAAG
GATGTCCTTGCACTTGGCTATTTTTGTAGCAACTATAGTTTCAAATCTAT
GTTTCATATTCATCCTTCTACTATATTTCAAGTAGTTTTGTCTCATTAAC
AGGATAAAAAAGGATGATATATTGACCAGAATTTTGTTTATTTCGTGTCA
GTATCTTCAAAATGGCATTATTTGTATCATTATAAGGAATAACTTCATCG
TTATTTGTAattcattttcgtttttctcAGGTGCACCAAACAAAGGGGAC
CCAGGTAGTGATGATGAAGAGCTTTACAAATACATGTTGATTCCTGTGGG
AGCTGTTTGTCTTATCATCGGCGTCGCTTTGGGTTGCATGGGTCATCGAT
ATCAGAATGTCAAGAATCGATGCAAGAATAATAACGGTTTGAAATTATGG
ATTATTATTTGCCTCATAAGCTCTAGACGAGTATCATTTGTCATTTGAAG
TACTTCACTACTTTTGTAATTCTATAGATTAGATGATGTTACCCTTTAAT
AATACCGGATGTGTCAGAAATAAGTTACCCTGAAGTTTCTCAAGTTGTAT
GACTtcttaaagaattaaaattgatcCATCAATGTTTGAATTTACCTTTC
CTCTTTACTATAGAAACATttcgattttttagaaattcatAGAACTTGAG
AAAGTTGACTttaaagagggtaacttatttctggCACTCCCGGCATATAc
ttttgaaagatcaaaatgttGGTGGGTATTGGAATAAGAGATACTGTATA
TTATTTTTCGTCTTGGTCAATCTTTCAATTGGCCTTTCGGCAAACTTTCT
TTCTTTATATTTCCTTATTATTCTTGAACTAATTGATTTCTGACCATTAC
ATTCCAGTGTCACCAGAGATGAACCACAACAATGGACGCAACAGAGGTGG
TGTAGCTAATCCTTCTTACACGCCAGATTCCGTCATTATAAACGATACCC
CTGAAATGATCCGAAATGGTGGAATTTAATATGCAACAATGCTATTAGAT
GTTTAAGAGATTGTgtatctttcaaattttccctACAACTCatgtcaaat
tttgaaatactttgtAGTGCTGCATAACATGAATACTCATATCACTCTTC
AGCATCGAAGCATGATCGTGAACAACTTTGAGTTGATTAAATTctgatga
aattttttaaaggaCGAGTTCCTTGTGTGTTTTGGAAATTTATATTTCAA
TCTTTAACTTGAaatcttccttttctttttcttcgtaATCTCAAATTCTA
ATTATTTGCACTTTAACAAACAAGACTACTGTATTTATTAAGATTGTTTG
CAAACGTCTCCTTGACGACCTGTGTAGTCgctactttttttaaatttcaa
aagatttgtgACTCTAACGTGTTTCGACTAAttcttttctcaattttttt
aaactttttcatcaTGTATATACAGGAcctattctttttctttttttata
ttataaaatcatttttgagttatttatttctttattctAAGTTTTACTTG
AGGTACTTTTTATACCAACACTACTAGTTGTAAAGATTAtcattttttac
caaaattattgtatatattattttgaatatttaaaatttaaaacaggTTA
GACCTTGAaggttattttaaatttttgcacttttaggtaaaaaaattaCA
TGTGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003571XLOC_003571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006239-exon-sc0000066-1491911889:269399..269441TCONS_00006239-exon-sc0000066-1491911889:269399..269441Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:269399..269441TCONS_00006239-exon-sc0000066-1510915933:269399..269441Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:269399..269441TCONS_00006239-exon-sc0000066-1575043694:269399..269441Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1491911889:269876..270016TCONS_00006239-exon-sc0000066-1491911889:269876..270016Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:269876..270016TCONS_00006239-exon-sc0000066-1510915933:269876..270016Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:269876..270016TCONS_00006239-exon-sc0000066-1575043694:269876..270016Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1491911889:270280..270420TCONS_00006239-exon-sc0000066-1491911889:270280..270420Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:270280..270420TCONS_00006239-exon-sc0000066-1510915933:270280..270420Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:270280..270420TCONS_00006239-exon-sc0000066-1575043694:270280..270420Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1491911889:270724..270888TCONS_00006239-exon-sc0000066-1491911889:270724..270888Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:270724..270888TCONS_00006239-exon-sc0000066-1510915933:270724..270888Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:270724..270888TCONS_00006239-exon-sc0000066-1575043694:270724..270888Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1491911889:271179..271334TCONS_00006239-exon-sc0000066-1491911889:271179..271334Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:271179..271334TCONS_00006239-exon-sc0000066-1510915933:271179..271334Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:271179..271334TCONS_00006239-exon-sc0000066-1575043694:271179..271334Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1491911889:271806..272606TCONS_00006239-exon-sc0000066-1491911889:271806..272606Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1510915933:271806..272606TCONS_00006239-exon-sc0000066-1510915933:271806..272606Clytia hemisphaericaexon
TCONS_00006239-exon-sc0000066-1575043694:271806..272606TCONS_00006239-exon-sc0000066-1575043694:271806..272606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:269399..272606 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	1.20595e-09	0	5.71766e-08	0	0	0.717777	0	0	0	0	0	0	0	6.95879e-06	0.750832	0	0	1.6487e-06	0	0.112506	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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