TCONS_00063169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063169
Unique NameTCONS_00063169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063169 ID=TCONS_00063169|Name=TCONS_00063169|organism=Clytia hemisphaerica|type=transcript|length=644bp
GGAAAAACAccagtaaaaaaagaaagattgatGATGTCAGTGAAGATCGA
AGAAAGACTATTTAGGTTAGAAGAAATAATACAATAAGGGATGCTATTGG
GACCAGAAGCTTTGTTCTCACTTAAGGACATTAAAACTTTAGAGAGTTCG
AGTTTGGAGACTGGCGAGATGAGAAAGTTGTTAGGATTTCGNTCTCACTC
AAGGACATTAAAACTTTAGAGAGTTCGAGTTTGGAGACTGGCGAGATGAG
AAAGTTATTAGGATTTCGACGTTCATTTGATAGCCATTCAGAAAAGTGAT
GACGTGTGAAAGGGTTTTTTGATCGTATCTTACCAGCAATCGTTGAGAAG
AAATCATTGAAGCCCTCTGAGACTTCTTGAGGACATGAAGAAAGAGAGTC
ATTGATGTTGAGAGAAATACTAGACCTAGAATTTGAAGAAGATATGACTT
CCCGGACACCTTGCCAAAGTTTACGAAGGTTATTAAAGTTTTGTTGAAAA
TAGTGAGAATAATGAAGTTTTTTACTTGCACGAATGAGTGAAACTATTCG
AttacgataaaatttatatctaCCTCGAAGGAAAGATTTGAGATCCTTTG
CAGAATCAGGAACGCTCAGATAGTCATTTTTGAGATTATCCCTG
Run BLAST on NCBI

protein sequence of TCONS_00063169-protein

>TCONS_00063169-protein ID=TCONS_00063169-protein|Name=TCONS_00063169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
RDNLKNDYLSVPDSAKDLKSFLRGRYKFYRNRIVSLIRASKKLHYSHYFQ
QNFNNLRKLWQGVREVISSSNSRSSISLNINDSLSSCPQEVSEGFNDFFS
TIAGKIRSKNPFTRHHFSEWLSNERRNPNNFLISPVSKLELSKVLMSLSE
XEILTTFSSRQSPNSNSLKF
Run BLAST on NCBI

transcript from alignment at scaffold_383:98426..99069

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063169 ID=TCONS_00063169|Name=TCONS_00063169|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at scaffold_383:98426..99069 (Clytia hemisphaerica)
CAGGGATAATCTCAAAAATGACTATCTGAGCGTTCCTGATTCTGCAAAGG
ATCTCAAATCTTTCCTTCGAGGtagatataaattttatcgtaaTCGAATA
GTTTCACTCATTCGTGCAAGTAAAAAACTTCATTATTCTCACTATTTTCA
ACAAAACTTTAATAACCTTCGTAAACTTTGGCAAGGTGTCCGGGAAGTCA
TATCTTCTTCAAATTCTAGGTCTAGTATTTCTCTCAACATCAATGACTCT
CTTTCTTCATGTCCTCAAGAAGTCTCAGAGGGCTTCAATGATTTCTTCTC
AACGATTGCTGGTAAGATACGATCAAAAAACCCTTTCACACGTCATCACT
TTTCTGAATGGCTATCAAATGAACGTCGAAATCCTAATAACTTTCTCATC
TCGCCAGTCTCCAAACTCGAACTCTCTAAAGTTTTAATGTCCTTGAGTGA
GANCGAAATCCTAACAACTTTCTCATCTCGCCAGTCTCCAAACTCGAACT
CTCTAAAGTTTTAATGTCCTTAAGTGAGAACAAAGCTTCTGGTCCCAATA
GCATCCCTTATTGTATTATTTCTTCTAACCTAAATAGTCTTTCTTCGATC
TTCACTGACATCatcaatctttctttttttactggTGTTTTTCC

Coding sequence (CDS) from alignment at scaffold_383:98426..99069

>TCONS_00063169 ID=TCONS_00063169|Name=TCONS_00063169|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_383:98426..99069 (Clytia hemisphaerica)
AGGGATAATCTCAAAAATGACTATCTGAGCGTTCCTGATTCTGCAAAGGA
TCTCAAATCTTTCCTTCGAGGtagatataaattttatcgtaaTCGAATAG
TTTCACTCATTCGTGCAAGTAAAAAACTTCATTATTCTCACTATTTTCAA
CAAAACTTTAATAACCTTCGTAAACTTTGGCAAGGTGTCCGGGAAGTCAT
ATCTTCTTCAAATTCTAGGTCTAGTATTTCTCTCAACATCAATGACTCTC
TTTCTTCATGTCCTCAAGAAGTCTCAGAGGGCTTCAATGATTTCTTCTCA
ACGATTGCTGGTAAGATACGATCAAAAAACCCTTTCACACGTCATCACTT
TTCTGAATGGCTATCAAATGAACGTCGAAATCCTAATAACTTTCTCATCT
CGCCAGTCTCCAAACTCGAACTCTCTAAAGTTTTAATGTCCTTGAGTGAG
ANCGAAATCCTAACAACTTTCTCATCTCGCCAGTCTCCAAACTCGAACTC
TCTAAAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039577XLOC_039577Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063169-proteinTCONS_00063169-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063169-exon-scaffold_383-1491911889:98426..99069TCONS_00063169-exon-scaffold_383-1491911889:98426..99069Clytia hemisphaericaexon
TCONS_00063169-exon-scaffold_383-1510915933:98426..99069TCONS_00063169-exon-scaffold_383-1510915933:98426..99069Clytia hemisphaericaexon
TCONS_00063169-exon-scaffold_383-1575043694:98426..99069TCONS_00063169-exon-scaffold_383-1575043694:98426..99069Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_383supercontigscaffold_383:98426..99069 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83428	2.01913	1.10232	0.602413	1.55636	1.3364	0.543428	1.00676	0.535165	0.143588	0.777217	0.219558	0.526709	2.27187	0.594151	1.68589	0	0.7394	1.03282	1.66703	0.469852	1.03849	0.278865	0.489832	0.405325	1.34491	0.670993	0.238701	0.164018	0.265692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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