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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063104 ID=TCONS_00063104|Name=TCONS_00063104|organism=Clytia hemisphaerica|type=transcript|length=3125bpRun BLAST on NCBI transcript from alignment at scaffold_38:137270..199137- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00063104 ID=TCONS_00063104|Name=TCONS_00063104|organism=Clytia hemisphaerica|type=transcript|length=61868bp|location=Sequence derived from alignment at scaffold_38:137270..199137- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00063104 vs. Swiss-Prot (Human)
Match: WIPI2 (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 2.918e-97 Identity = 184/345 (53.33%), Postives = 226/345 (65.51%), Query Frame = 3
Query: 867 KLIVNLLCSLYFL----Y*VLHTIRDTPPNLAGLCALSDNSDNCYIAYPGNNQIGEVQIFDGINLRAVTMIAAHDAPVXXXXXXXXXXXXXXXSEKGTVIRVFSIPEGVKLFEFRRGMKRCAQINSLSFSQDLMYLACSSNTETIHVFKLEAETDKEKSPSSNKEEQKDQSWMGYFGKALMTPASYLPSQMTEVFSQGRAFAIAKLPNAGPRNTCTLATINKLPRILVASADGYLYIYNVDPAEGQECTLLRQFPL----------IPNDDDSIPSNADGQGFSAGLAVSDQQRNTPSPQSASSPIRTPQTPDHFPTSSS-----EQNLRLSDDGEYPPLTVRNE 1844
+LIV L SLY VLHTIR+TPPN AGLCALS N+DNCY+AYPG+ IGEVQ+FD INLRA MI AHD+P+AAL F+ + T LATASEKGTVIRVFSIPEG KLFEFRRG+KRC I SL+FS D M+L+ SSNTET+H+FKL ET KEK P ++ +W GYFGK LM SYLPSQ+TE+F+QGRAFA +LP G +N C+LATI K+PR+LV +ADGYLY+YN+DP EG EC L++Q L + + P G +AG + T P SSP R T D + LRL +D E+PP+ +R +
Sbjct: 128 RLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL--ETVKEKPP------EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHDCPLVTQTYGAAAG-------KGTYVP---SSPTRLAYTDDLGAVGGACLEDEASALRLDEDSEHPPMILRTD 454 HSP 2 Score: 133.265 bits (334), Expect = 1.481e-32 Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = 1
Query: 217 MNLAA-NGSDPSGELLFVNFNQDRT------------------SLAVGSRLGYKLFSLANIERLEEIHD-YDKGDVCIVERXXXXXXXXXXXXXXPRKLKVCHFKKGTEICNYSYPNTIXXXXXXXXXXXXXXEESLYIHNIRDMKV 597
MNLA+ +G +G+LLF NFNQD T SLAVGS+ GYK FSL+++++LE+I++ D DVCIVERLFSSSLVA+VSL +PRKLKVCHFKKGTEICNYSY NTIL+V+LNR RL+V LEESLYIHNIRDMKV
Sbjct: 1 MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKV 147 The following BLAST results are available for this feature:
BLAST of TCONS_00063104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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