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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063085 ID=TCONS_00063085|Name=TCONS_00063085|organism=Clytia hemisphaerica|type=transcript|length=2161bp
aggaaataaaaaaagcaaTGACTTCAACTTACAACAAGATCTTATACCAG
TATGTGACAACTTCCATCGGTGCTTTGGTCATCGCCTCAAACTCCATCAT
GCTTGTTTGCATTCGACGTTCAAAAGCACACAAAAATAAACCGGTCGGTT
TTGTTTACGTCATCAATATGGCAGCGTCTGATTTGTTTGTTGGGGTAACT
ATGGTGATTCTAAAATCCATGCACCCTTACATGGGAACAACACTAGCTGA
AAATGTTGTGGCGCAAAACATATATCACGTGGTTAGATTTTGCATGATTC
GATTTTCACTTCTCGTCTCCGTTTTTAACTTAGTGGCACTGACCATAGAT
CGCCTATGCGCGATCCGCTTTCCATTCTTGGTCCAACGTCAAGATAAAGG
ATTTCACATCAAAGTCTGTGGCCTTATATGGTTCGTATCACTTGTTATCA
CTTCCATTTTTTACATTCTGGCaagattttatttaaaagacaGTTTACGA
TACAAAGACGCTATCTTCCCTATCGCGACGATTCCGGCAACTGTGTTGTT
TGTTGTGAGTTATACGATGATTTTTACCGTCGTTCGTCGTACGTCAAATA
CCGTCAACAGAATTGAAGCATCCGTTAGGAGACGCAGGATTGATACCGAA
GGGGCTGGGGAGAATAATGAAGAAAGACGCCcggaagaaaaagaaaagat
tGCATTTGTGCGGCTTGCAGTGAAAACAGTGGCTGTTTTCGTTATATGTT
GGCTACCTCTGTCAATCACTTCCATCTACAAATTACTCAGCACAGAGGCA
CCAGACAGAGACCTCGAATCGAGTTTCTTCACATTAGCCTTTTTCAATTC
TCTCATTGACCCATTCATCTATTTCGCACATTTAAGACGTGTCATTATCA
GAGTTGTGCGTCGTATCATGGGTCTGAATACTGAAATGATCATTCAACCA
CAAAGCTCTGAGAGATCTGGCAATTCTCGAAGAGAATCATCAATCAAGTT
ATCAACAGTGTACACGACTCCTCAAAACAGGACGAACCCAGATGTTATCA
TTTCTGCATCTAAGACAGACACAGGGGTTGTTAATTTGGGTTATGATGAA
GAACATTCATTGAATTCTCCAGACTGTAGCAACAGTGGATGGACGAATTT
GAAACCACCAAGTGAGCGATTGAGTGTTGACGTATTGGTACATCAACTGC
CAAGAAGTCTGGAGCCTGCATAATGGTTAGGCCTTTTTGCATTTGAGCAA
GAGTCCTAGTTAGGTCATCACATTTTTATCGTGCCcccactcgatttcta
aacgacggcatgaactgccaaaaaattgattcctaaattggacccttaca
gtgcagctcttaaacagtgaaaaggtacccttacccttacagtgcatttt
actaAACGTTTCTCTTTCTTACAATGTAGTTATTGATtccatatcttatt
ttgctgatgCCACccagaccagcttggagcccAGCCCCGTTGGAAAAATT
GACAGAAATTTCAGCCGCCCTCTTGGAAataaacttttatttcatcccat
tcaaaattccatatttaaaaattgcacttcaaaaccattgccactgaatt
ttttaaacttggaacaaaggaatttctatccccattaggatttcaatagg
aatttttatccccgctgagaaaaaagttccactggggctgtgagggGTGT
TTAAgatgtcgaaaaaaaaaatgatccaACTGtctaacatttttttaagt
tttcaaacaaacgaacGCTNGTTTAAgatgtcgaaaaaaaaaatgatcca
ACTGTCtaacattttttaaagttttcaaacaaacgaacGCTTCCCTCTAA
CAAGATTTGCCATTGATTTGTTGAGTCGAAATTCAGCAGAAAGCAACTGT
GACAAACGCTTTGAAAAAAGTCGATGATAAAGCATTCACGACGAAGGGAT
AGAACACTCGTATTTTCAAGACGAATGCTTTACGTACCTGCTCCAAGCAT
TTGTACGGCTACAATTCAAAATACGAAGTATAAACACTCAGAAAACTAGT
GCTTCTTGTCATTTTAACCTTTGACGATTAATATAATGATATAAATTCAT
GAGCATATTGTAGCTTCAGTTACtaagttaaagttttttttcaaactatc
aacaataaaat Run BLAST on NCBI transcript from alignment at scaffold_38:130807..133380+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063085 ID=TCONS_00063085|Name=TCONS_00063085|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at scaffold_38:130807..133380+ (Clytia hemisphaerica)
aggaaataaaaaaagcaaTGACTTCAACTTACAACAAGATCTTATACCAG
TATGTGACAACTTCCATCGGTGCTTTGGTCATCGCCTCAAACTCCATCAT
GCTTGTTTGCATTCGACGTTCAAAAGCACACAAAAATAAACCGGTCGGTT
TTGTTTACGTCATCAATATGGCAGCGTCTGATTTGTTTGTTGGGGTAACT
ATGGTGATTCTAAAATCCATGCACCCTTACATGGGAACAACACTAGCTGA
AAATGTTGTGGCGCAAAACATATATCACGTGGTTAGATTTTGCATGATTC
GATTTTCACTTCTCGTCTCCGTTTTTAACTTAGTGGCACTGACCATAGAT
CGCCTATGCGCGATCCGCTTTCCATTCTTGGTCCAACGTCAAGATAAAGG
ATTTCACATCAAAGTCTGTGGCCTTATATGGTTCGTATCACTTGTTATCA
CTTCCATTTTTTACATTCTGGCaagattttatttaaaagacaGTTTACGA
TACAAAGACGCTATCTTCCCTATCGCGACGATTCCGGCAACTGTGTTGTT
TGTTGTGAGTTATACGATGATTTTTACCGTCGTTCGTCGTACGTCAAATA
CCGTCAACAGAATTGAAGCATCCGTTAGGAGACGCAGGATTGATACCGAA
GGGGCTGGGGAGAATAATGAAGAAAGACGCCcggaagaaaaagaaaaggt
gAATGTCTATACTTTATACTGTAGATAGAAAGATATGAGCCCCCTCcccc
gaatgcattcgggatgggtcctacccacgaaggagtaggaatcacggcac
cgacagacactgcgacttgacagaAGCGATCTGCCAAGCCATGCCGTATA
CTTTATACTGTATGGTTGAATAAATCAAAATTCTAGGGCTAAGGGTTTGT
GATTGAAAATCTTGATCTTGTACAATCGTTGTTAATTTATATTTCTAGTG
GTTAAAGTTAGAATATGCCGATAACATCAGCCCCTCccaaaaatgttgaa
gctgACGGGAAAAAAGCCTGTGGGGAGAAGGGAAAGACTTTCAAAGCACT
GTTCCATGCATGAGTATTGGTAACGATTATAGCagtaaaatgttttaatt
ttcaattttagattGCATTTGTGCGGCTTGCAGTGAAAACAGTGGCTGTT
TTCGTTATATGTTGGCTACCTCTGTCAATCACTTCCATCTACAAATTACT
CAGCACAGAGGCACCAGACAGAGACCTCGAATCGAGTTTCTTCACATTAG
CCTTTTTCAATTCTCTCATTGACCCATTCATCTATTTCGCACATTTAAGA
CGTGTCATTATCAGAGTTGTGCGTCGTATCATGGGTCTGAATACTGAAAT
GATCATTCAACCACAAAGCTCTGAGAGATCTGGCAATTCTCGAAGAGAAT
CATCAATCAAGTTATCAACAGTGTACACGACTCCTCAAAACAGGACGAAC
CCAGATGTTATCATTTCTGCATCTAAGACAGACACAGGGGTTGTTAATTT
GGGTTATGATGAAGAACATTCATTGAATTCTCCAGACTGTAGCAACAGTG
GATGGACGAATTTGAAACCACCAAGTGAGCGATTGAGTGTTGACGTATTG
GTACATCAACTGCCAAGAAGTCTGGAGCCTGCATAATGGTTAGGCCTTTT
TGCATTTGAGCAAGAGTCCTAGTTAGGTCATCACATTTTTATCGTGCCcc
cactcgatttctaaacgacggcatgaactgccaaaaaattgattcctaaa
ttggacccttacagtgcagctcttaaacagtgaaaaggtacccttaccct
tacagtgcattttactaAACGTTTCTCTTTCTTACAATGTAGTTATTGAT
tccatatcttattttgctgatgCCACccagaccagcttggagcccAGCCC
CGTTGGAAAAATTGACAGAAATTTCAGCCGCCCTCTTGGAAataaacttt
tatttcatcccattcaaaattccatatttaaaaattgcacttcaaaacca
ttgccactgaattttttaaacttggaacaaaggaatttctatccccatta
ggatttcaataggaatttttatccccgctgagaaaaaagttccactgggg
ctgtgagggGTGTTTAAgatgtcgaaaaaaaaaatgatccaACTGtctaa
catttttttaagttttcaaacaaacgaacGCTNGTTTAAgatgtcgaaaa
aaaaaatgatccaACTGTCtaacattttttaaagttttcaaacaaacgaa
cGCTTCCCTCTAACAAGATTTGCCATTGATTTGTTGAGTCGAAATTCAGC
AGAAAGCAACTGTGACAAACGCTTTGAAAAAAGTCGATGATAAAGCATTC
ACGACGAAGGGATAGAACACTCGTATTTTCAAGACGAATGCTTTACGTAC
CTGCTCCAAGCATTTGTACGGCTACAATTCAAAATACGAAGTATAAACAC
TCAGAAAACTAGTGCTTCTTGTCATTTTAACCTTTGACGATTAATATAAT
GATATAAATTCATGAGCATATTGTAGCTTCAGTTACtaagttaaagtttt
ttttcaaactatcaacaataaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063085-exon-scaffold_38-1491911889:130807..131504 | TCONS_00063085-exon-scaffold_38-1491911889:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063085-exon-scaffold_38-1510915933:130807..131504 | TCONS_00063085-exon-scaffold_38-1510915933:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063085-exon-scaffold_38-1575043694:130807..131504 | TCONS_00063085-exon-scaffold_38-1575043694:130807..131504 | Clytia hemisphaerica | exon |
| TCONS_00063085-exon-scaffold_38-1491911889:131918..133380 | TCONS_00063085-exon-scaffold_38-1491911889:131918..133380 | Clytia hemisphaerica | exon |
| TCONS_00063085-exon-scaffold_38-1510915933:131918..133380 | TCONS_00063085-exon-scaffold_38-1510915933:131918..133380 | Clytia hemisphaerica | exon |
| TCONS_00063085-exon-scaffold_38-1575043694:131918..133380 | TCONS_00063085-exon-scaffold_38-1575043694:131918..133380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_38 | supercontig | scaffold_38:130807..133380 + |
Blast
The following BLAST results are available for this feature:
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