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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063026 ID=TCONS_00063026|Name=TCONS_00063026|organism=Clytia hemisphaerica|type=transcript|length=3926bp
aaggcCTTTAAACTTTACAATCCTTCATTAATTGACAAGATTTTTCAATC
AATGAacctattgcttgatacttttctcaaacaaagaaaattcttttggg
GACACCCAAATATTGGGGGTACGTAATTACTTTGGAGACGTAACTGAACC
CTGGAGGAGCCTCGAGTGTGACAAGAACACctttattctaatttttttcc
ttcaatatTATTGAACCCTTTTTTTATTCAACTTATTCTTGCATTTCTTT
TTCATCTAGATTTCAAATATAAATGAATAGTACAGAAGAAACTCCAGAAA
AGAAGGAATATGAATGCCGTCTTTGTGGAAAGACTTTCACTGAAAAATTG
TCATACGTAAAACACATGGGCTTATATAAGCTTCATAATTGTGAGGAGTG
TGGAAAATGCTTTTCATCAAGACGTGTTTTGGCATTACACCAGGGATGTC
ATGAACCAATGAAAAATCCCAAGTGTAAAGGAAAGAATGTTCTTTTCAAC
TGTAATGAATGTGGTGCAAGCTTTGCAGGAAATGATTACTTGCAAAAACA
TTTCTTGTAGAAACATCTCAAAATCGCCCATAAAGATGTGATTTGCAACT
GTGGAGCTATATATACTAGAAAATATTACAGGGAAAAACATGTCTTTCAA
TGTTCAAAAGcaagaaagaaatttaaatgCGCTAAATGTGGTGACTTGTT
TGTAcagaaagttgattttgattCTCACACTAGATCTCACCATACCCAGA
AGAAATATCAATGTACGAAATgtaacaaaatgtttttgaatcaaGTTGCT
TTAGAGAATCATATGAAAGAAATCCATTCTGAGTTGGGCAGCCAATATAA
GACAGTTGAATGTGCCGAAAATGatAAAAGAATGGTTAAAAAGAAGACAA
GTGACAAAGAAGAAGCCAATGTTGATTTTCAATCATTATCTACAATATCT
GATCATAATTATAGTGCACACCAACCAGATCACAACAATAAGACGGTAGC
AAGATCACCTGCAATATACACCTATAATGGCAACAAATTGTTAAATAATA
GAGCTAAAGAAATCAATTTAGCTGTAAAAAATAGATCAAGGATTTTCGCT
CAACATCAAAAGACAAAAATCCTCCCCAAATTCAAAGAATCACACTCGGA
CAATATCAACAAGACATCGATATCAAAAGGAACTGAAATAACAGTAATGG
ATCTAGAcaaaacttcaatttttgatcaaaatgaaaGAATTGGACCCAAA
GTGAAAAAATTACATTCAATAAATATCGAATTCCACAATAAGACACTGAC
AGTTCATCTCCCAAACCAAAAGCTGCCCGTGCCAATATTGCTTCGAAAAA
AGCCATCTTCAACTCAACAAAATGGACTGATTCCGCTTCCAAATCATAAA
ACCTCTAACTTACAAAACAAATCTTCGCAAAAACCTCAATCTTTAACACC
AGAGCCTCGGTCACACCAAAAACAAACACCCATCGCAACTCAACGAAGTC
AACCGTTATCACAACCAGAGGCTACAGAAATAGGACCTTCACGAGAAAAT
TATCCAGAAAAAACTTTATCAACAGAACCAGATTCACAAGAACAGCAGTT
ACGTACATCAAATCAAAAGAATAAAACGATATCACAACCAACAAGCGACC
CATTACAAACAAATCCCCAAGAGACTTCTCCACACAAAAGTGATGAACTT
TCTTGTCTACAAAAACGACCATCAACCCACAACGATAAACCGCTCGCTAA
AGAAACTCAACACATCGCTAACCCATTACAAAAACATCCCGAAGAGACTT
CTCCAcacaaaaatgatgaactttctTGTCTACAAAAACAACCATCAACC
CACAACGATAAACCGCTCGCTAAAGAAACTCAACACACCGCTAACCCATT
ACAAAAACATCCCCAAGAGACTTCTCCAcacaaaaatgatgaactttctT
GTCTACAAAAACAACCATTAACCCATAACAATAAACCGCTACCTGAAGAA
ACTCAACACACCACTGACCCATTACAAACAAATCCCGAAAAGGCTCCTCC
AaacaaaaatgatgaacttttagtGTTAAAGAAAAGGATAATATCTCCTG
AAAAACAGGAGATTATAAATTGCGAGGAATGTGGTGAAACGtttacaaaa
atgaatttaTATTACCAACACATTGATAAGCACTTCAAAAAAGACTGTCA
AGTTCGCCGTAAACGTTTCTCCTCTGATATGAATATACAACCAATTCCTA
CCAAGAAACGTCGAGATTTGAAATACAAATGCGCTAAATGTgacaaaata
ttcttttgggAAGCTTCGATAAAAGCACATTACAGAACACAGCATAGTTT
ACCAGCTcgtaaaaagaaaatgtttcaaTGTAACCATTGCGAACGTAAAT
TCACATCTgaaaaagggttaaaaattCATCGCCACTTGAAACATAATAAG
GCTAAAAAGCAGCAACGGCTTCAAAATAAAGTGCTTGAAACAGGTTCACA
GCAGAAACAAGTCAATCTGGAGGAAAAGCAGGTGCAGGGTAAAACGCTCG
AAACAAGTTTCCATCTTCCGACGGAAGAGCAGCTTCAAAGTAAAACGAAA
ATCAGCCCAATTGAAAGACTACAGTATCAAGTTAAAACGCTCGAAACAAG
TTTTCAGCAAGAACAAGCCAACCTGACTGAAGAAACATCACAGGAATCTC
AAGGTAAAACGATCGACACATGCTCTCAACTAGAACAAGTCAACCCGACT
GAAGATAACAGCCAACATTATCAAGGTGAAACACTCGAAACAAGTTTTCA
ACAAACGAAACCCAAGACAATTGATGAAATGAGACAACTATATCAAAGTA
AACCGCATGGGAGTTTTTTCCGTCAACTTCAACCATGGCGATCACATATT
TATGTTCATCCCTTGAAAAAGTTTAAGTGTGATGAATGTGGTGAAGCATA
TTCAAAGAAGTTGGAACTAGATTCTCATATTATCAAAAAGCACACAAAGA
AGACCAAATCAAGAACTCGCTGTGAAATTTGTAAAAAGGATTTTGACACA
GTACCTCAACTATCAATACATAAGCAAAAGGATCCTGACCATATTGAAAA
AGCAAGGAAAGAGGCTTTAGATATAGTGCGAATGTTTAATTTGAGTAAAA
AGGAAGTCACATCGGACATCCCTTAGCACTCCAAGAACGTTGTAAACCAT
TTGTATATGAAtaattgtgaaaaattattttttttacataatgTACAGTG
GAGTTTCTATACATAAAACTCAAACACGCACTAGGAACtcaaattttttc
gagttatgAAAATATTGAGTTATGGAGCCTTACTCCTTATGAGacatttt
taactgaagggaGCAAGCAGAAAACTCGTTCGAGTTACGAAGACATTCGA
GTTGCAgtagttcgaattatggagactccactttaTTTACTTTAAAACAT
AGATTTATACCTTTATCAATTAGGTTCTGAGACTACATTTTAATGTTAAC
CCTTAGACGCCGAAAGACGTGTATATGCGACCAAAATCGGTCAAAATACT
AATCTTCCAAGACTTTGTGCAATAGATCTCCATAGAATGCATCCCATTgg
tttaaatcttttttttaacacAGTTGTGTTATCGAACTAGGGGCTGATGA
CTCAAATAATTTTAAGATTATATTTAAAGCTTGTCCTTATGTGACAACGC
GTCATGttatgttgatattttttatttcaataggaaaaactTTACTTTAT
TTAGGTgactttgttgattttttttatgagctttcaagcacaattttttt
gattttacctTTCTTGGAGCTGGGGGCTATTTTCATCATCCCTCTCCTAC
CACCTAAAAATTTCTAGGACCTTGACCACTTTGCATTCTATATTCACCAC
TTGATTTTAAGAGACATAAACAGAAG Run BLAST on NCBI transcript from alignment at scaffold_376:106230..110696- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063026 ID=TCONS_00063026|Name=TCONS_00063026|organism=Clytia hemisphaerica|type=transcript|length=4467bp|location=Sequence derived from alignment at scaffold_376:106230..110696- (Clytia hemisphaerica)
AAGGCCTTTAAACTTTACAATCCTTCATTAATTGACAAGATTTTTCAATC
AATGAACCTATTGCTTGATACTTTTCTCAAACAAAGAAAATTCTTTTGGG
GACACCCAAATATTGGGGGTACGTAATTACTTTGGAGACGTAACTGAACC
CTGGAGGAGCCTCGAGTGTGACAAGAACACCTTTATTCTAATTTTTTTCC
TTCAATATTATTGAACCCTTTTTTTATTCAACTTATTCTTGCATTTCTTT
TTCATCTAGATTTCAAATATAAATGAATAGTACAGAAGAAACTCCAGAAA
AGAAGGAATATGAATGCCGTCTTTGTGGAAAGACTTTCACTGAAAAATTG
TCATACGTAAAACACATGGGCTTATATAAGCTTCATAATTGTGAGGAGTG
TGGAAAATGCTTTTCATCAAGACGTGTTTTGGCATTACACCAGGGATGTC
ATGAACCAATGAAAAATCCCAAGTGTAAAGGAAAGAATGTTCTTTTCAAC
TGTAATGAATGTGGTGCAAGCTTTGCAGGAAATGATTACTTGCAAAAACA
TTTCTTGTAGAAACATCTCAAAATCGCCCATAAAGATGTGATTTGCAACT
GTGGAGCTATATATACTAGAAAATATTACAGGGAAAAACATGTCTTTCAA
TGTTCAAAAGCAAGAAAGAAATTTAAATGCGCTAAATGTGGTGACTTGTT
TGTACAGAAAGTTGATTTTGATTCTCACACTAGATCTCACCATACCCAGA
AGAAATATCAATGTACGAAATGTAACAAAATGTTTTTGAATCAAGTTGCT
TTAGAGAATCATATGAAAGAAATCCATTCTGAGTTGGGCAGCCAATATAA
GACAGTTGAATGTGCCGAAAATGGTAAGACATCTTAACTGAAAATTTGAG
CTGGAATTTTAATGACAAAATCAAAATGATATTTCTAAATCTAAGGGAAT
GGTATGTCTCAGAGTATTGGGTCAAGGGCTATCGTTTGCCATGGTTAGAT
TATCTAAAAAGCTTTTAATTAACGGGATAATGAGAAAAATTGGGAAATTT
GAAGGCCTTAGCAACCTGGTAGCATAAAAAAATGTGTAATGTATGAAAAC
TAAAATTCCACCAAAAAGAAATTGAAAGAAATTTTAACCCACGTATAGAG
GACGATTTTGAGGAATTGACTATATTCTAAAGAAACTTTTATTTTGTTCC
TGTTTCTTTTGATTTTTAGATAAAAGAATGGTTAAAAAGAAGACAAGTGA
CAAAGAAGAAGCCAATGTTGATTTTCAATCATTATCTACAATATCTGATC
ATAATTATAGTGCACACCAACCAGATCACAACAATAAGACGGTAGCAAGA
TCACCTGCAATATACACCTATAATGGCAACAAATTGTTAAATAATAGAGC
TAAAGAAATCAATTTAGCTGTAAAAAATAGATCAAGGATTTTCGCTCAAC
ATCAAAAGACAAAAATCCTCCCCAAATTCAAAGAATCACACTCGGACAAT
ATCAACAAGACATCGATATCAAAAGGAACTGAAATAACAGTAATGGATCT
AGACAAAACTTCAATTTTTGATCAAAATGAAAGAATTGGACCCAAAGTGA
AAAAATTACATTCAATAAATATCGAATTCCACAATAAGACACTGACAGTT
CATCTCCCAAACCAAAAGCTGCCCGTGCCAATATTGCTTCGAAAAAAGCC
ATCTTCAACTCAACAAAATGGACTGATTCCGCTTCCAAATCATAAAACCT
CTAACTTACAAAACAAATCTTCGCAAAAACCTCAATCTTTAACACCAGAG
CCTCGGTCACACCAAAAACAAACACCCATCGCAACTCAACGAAGTCAACC
GTTATCACAACCAGAGGCTACAGAAATAGGACCTTCACGAGAAAATTATC
CAGAAAAAACTTTATCAACAGAACCAGATTCACAAGAACAGCAGTTACGT
ACATCAAATCAAAAGAATAAAACGATATCACAACCAACAAGCGACCCATT
ACAAACAAATCCCAAAGAAACTTCTTCATATCAAAATAAGGAACTTTCTT
GTCTACAAAAACAACCATCAACCCACAACGATAAACCGCTCGCTAAAGAA
ACTCAACACAGCGCTAACCCATTACAAAAACATCCCCAAGAGACTTCTCC
ACACAAAAGTGATGAACTTTCTTGTCTACAAAAACGACCATCAACCCACA
ACGATAAACCGCTCGCTAAAGAAACTCAACACATCGCTAACCCATTACAA
AAACATCCCGAAGAGACTTCTCCACACAAAAATGATGAACTTTCTTGTCT
ACAAAAACAACCATCAACCCACAACGATAAACCGCTCGCTAAAGAAACTC
AACACACCGCTAACCCATTACAAAAACATCCCCAAGAGACTTCTCCACAC
AAAAATGATGAACTTTCTTGTCTACAAAAACAACCATTAACCCATAACAA
TAAACCGCTACCTGAAGAAACTCAACACACCACTGACCCATTACAAACAA
ATCCCGAAAAGGCTCCTCCAAACAAAAATGATGAACTTTTAGTGTTAAAG
AAAAGGATAATATCTCCTGAAAAACAGGAGATTATAAATTGCGAGGAATG
TGGTGAAACGTTTACAAAAATGAATTTATATTACCAACACATTGATAAGC
ACTTCAAAAAAGACTGTCAAGTTCGCCGTAAACGTTTCTCCTCTGATATG
AATATACAACCAATTCCTACCAAGAAACGTCGAGATTTGAAATACAAATG
CGCTAAATGTGACAAAATATTCTTTTGGGAAGCTTCGATAAAAGCACATT
ACAGAACACAGCATAGTTTACCAGCTCGTAAAAAGAAAATGTTTCAATGT
AACCATTGCGAACGTAAATTCACATCTGAAAAAGGGTTAAAAATTCATCG
CCACTTGAAACATAATAAGGCTAAAAAGCAGCAACGGCTTCAAAATAAAG
TGCTTGAAACAGGTTCACAGCAGAAACAAGTCAATCTGGAGGAAAAGCAG
GTGCAGGGTAAAACGCTCGAAACAAGTTTCCATCTTCCGACGGAAGAGCA
GCTTCAAAGTAAAACGAAAATCAGCCCAATTGAAAGACTACAGTATCAAG
TTAAAACGCTCGAAACAAGTTTTCAGCAAGAACAAGCCAACCTGACTGAA
GAAACATCACAGGAATCTCAAGGTAAAACGATCGACACATGTTTTCAGCA
AGAACAAGCCAAGCCGACTGAAGAAACACCACAGGAATCTCAAGGTAAAA
CAATCAACACATGCTCTCAACTAGAACAAGTCAACCCGACTGAAGATAAC
AGCCAACATTATCAAGGTGAAACACTCGAAACAAGTTTTCAACAAACGAA
ACCCAAGACAATTGATGAAATGAGACAACTATATCAAAGTAAACCGCATG
GGAGTTTTTTCCGTCAACTTCAACCATGGCGATCACATATTTATGTTCAT
CCCTTGAAAAAGTTTAAGTGTGATGAATGTGGTGAAGCATATTCAAAGAA
GTTGGAACTAGATTCTCATATTATCAAAAAGCACACAAAGAAGACCAAAT
CAAGAACTCGCTGTGAAATTTGTAAAAAGGATTTTGACACAGTACCTCAA
CTATCAATACATAAGCAAAAGGATCCTGACCATATTGAAAAAGCAAGGAA
AGAGGCTTTAGATATAGTGCGAATGTTTAATTTGAGTAAAAAGGAAGTCA
CATCGGACATCCCTTAGCACTCCAAGAACGTTGTAAACCATTTGTATATG
AATAATTGTGAAAAATTATTTTTTTTACATAATGTACAGTGGAGTTTCTA
TACATAAAACTCAAACACGCACTAGGAACTCAAATTTTTTCGAGTTATGA
AAATATTGAGTTATGGAGCCTTACTCCTTATGAGACATTTTTAACTGAAG
GGAGCAAGCAGAAAACTCGTTCGAGTTACGAAGACATTCGAGTTGCAGTA
GTTCGAATTATGGAGACTCCACTTTATTTACTTTAAAACATAGATTTATA
CCTTTATCAATTAGGTTCTGAGACTACATTTTAATGTTAACCCTTAGACG
CCGAAAGACGTGTATATGCGACCAAAATCGGTCAAAATACTAATCTTCCA
AGACTTTGTGCAATAGATCTCCATAGAATGCATCCCATTGGTTTAAATCT
TTTTTTTAACACAGTTGTGTTATCGAACTAGGGGCTGATGACTCAAATAA
TTTTAAGATTATATTTAAAGCTTGTCCTTATGTGACAACGCGTCATGTTA
TGTTGATATTTTTTATTTCAATAGGAAAAACTTTACTTTATTTAGGTGAC
TTTGTTGATTTTTTTTATGAGCTTTCAAGCACAATTTTTTTGATTTTACC
TTTCTTGGAGCTGGGGGCTATTTTCATCATCCCTCTCCTACCACCTAAAA
ATTTCTAGGACCTTGACCACTTTGCATTCTATATTCACCACTTGATTTTA
AGAGACATAAACAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00063026-exon-scaffold_376-1575043694:109824..110696 | TCONS_00063026-exon-scaffold_376-1575043694:109824..110696 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1575043694:108689..109477 | TCONS_00063026-exon-scaffold_376-1575043694:108689..109477 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1575043694:107509..108565 | TCONS_00063026-exon-scaffold_376-1575043694:107509..108565 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1575043694:106230..107436 | TCONS_00063026-exon-scaffold_376-1575043694:106230..107436 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1510915933:109824..110696 | TCONS_00063026-exon-scaffold_376-1510915933:109824..110696 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1510915933:108689..109477 | TCONS_00063026-exon-scaffold_376-1510915933:108689..109477 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1510915933:107509..108565 | TCONS_00063026-exon-scaffold_376-1510915933:107509..108565 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1510915933:106230..107436 | TCONS_00063026-exon-scaffold_376-1510915933:106230..107436 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1491911889:109824..110696 | TCONS_00063026-exon-scaffold_376-1491911889:109824..110696 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1491911889:108689..109477 | TCONS_00063026-exon-scaffold_376-1491911889:108689..109477 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1491911889:107509..108565 | TCONS_00063026-exon-scaffold_376-1491911889:107509..108565 | Clytia hemisphaerica | exon |
| TCONS_00063026-exon-scaffold_376-1491911889:106230..107436 | TCONS_00063026-exon-scaffold_376-1491911889:106230..107436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_376 | supercontig | scaffold_376:106230..110696 - |
Blast
BLAST of TCONS_00063026 vs. Swiss-Prot (Human)
Match: ZN175 (Zinc finger protein 175 OS=Homo sapiens GN=ZNF175 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.774e-18 Identity = 67/207 (32.37%), Postives = 103/207 (49.76%), Query Frame = 3
Query: 225 YSTYSCI-SFSSRFQI*MNSTEETPEKKEYECRLCGKTFTEKLSYVKHMGLY---KLHNCEECGKCFSSRRVLALHQGCHEPMKNPKCKGKNVLFNCNECGASFAGNDYLQKHFL*KHLKIAHKDVICN-CGAIYTRKYYREKHVFQCSKARKKFKCAKCGDLFVQKVDFDSHTRSHHTQKKYQCTKCNKMFLNQVALENHMKEIHS 830
Y ++C SF S+ Q+ ++ T EK YEC CGKTFT+K H ++ + H C ECGK F+ + +L++HQ H K + C+ECG +F ++H + + K +C CG + + KH ++ R F C KCG FVQK + +H R+H +K Y+C C K F + L+ H + IH+
Sbjct: 475 YQCHNCGKSFISKSQLDIHHRIHTGEKP-YECSDCGKTFTQKSHLNIHQKIHTGERHHVCSECGKAFNQKSILSMHQRIHTGEKP---------YKCSECGKAFTSKSQFKEH---QRIHTGEKPYVCTECGKAFNGRSNFHKHQITHTRERP-FVCYKCGKAFVQKSELITHQRTHMGEKPYECLDCGKSFSKKPQLKVHQR-IHT 666 HSP 2 Score: 82.8037 bits (203), Expect = 6.932e-16 Identity = 58/181 (32.04%), Postives = 83/181 (45.86%), Query Frame = 3
Query: 300 KKEYECRLCGKTFTEKLSYVKHMGLY---KLHNCEECGKCFSSRRVLALHQGCHEPMKNPKCKGKNVLFNCNECGASFAGNDYLQKHFL*KHLKIAHKDVIC-NCGAIYTRKYYREKHVFQCSKARKKFKCAKCGDLFVQKVDFDSHTRSHHTQKKYQCTKCNKMFLNQVALENHMKEIHS 830
KK Y+C CGK F + LS +H + KL+ C ECGK FS L +HQ H + + C+ECG +F L H + + K +C CG + +K + H + K ++C CG F+ K D H R H +K Y+C+ C K F + L H K IH+
Sbjct: 360 KKPYKCHDCGKAFFQMLSLFRHQRTHSREKLYECSECGKGFSQNSTLIIHQKIHTGERQ---------YACSECGKAFTQKSTLSLH---QRIHSGQKSYVCIECGQAFIQKAHLIVHQ-RSHTGEKPYQCHNCGKSFISKSQLDIHHRIHTGEKPYECSDCGKTFTQKSHLNIHQK-IHT 526
The following BLAST results are available for this feature:
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