TCONS_00062902 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062902
Unique NameTCONS_00062902
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062902 ID=TCONS_00062902|Name=TCONS_00062902|organism=Clytia hemisphaerica|type=transcript|length=1576bp
TTGTGTCTCACTTGGTGAGAGAATTGCTAGAAGAATACATCAGAAAGGTT
ATACTATTTATGATAGATAGAGAGTTTTCATCAGGAATCGAAATGCCATA
TATTTCCCATCATTTTCAAGGCAAAGAACGAGAAGGTGCAGAAGTTCCAT
GGGGAACAGAACCAAAAGAACGTTTGGGCGTTGGCAAAGGGAGCAAATTA
ACGACATACGGATGGATGTTTCAAGGACAAAAAGGTTTACCTGCACAATC
ATATAGAAATCACACAACTAATCACTTTGACCCACAGAACTGGCGAAATA
AAAGCCAGTactctgaaacattcttcactCCGCAAATGTACAGTCGTCAT
CAAATACAGAAATTCACGGCCAATCGTAATCACCGTCCACACCCTAAGGA
GCTAATTTGGCCTATGGAACCATTCAAGggGTATATGATTTGGAAACCTA
AACTTGTTCCGGATGATGGTGAAATCAAAAAGTACAGCGCTCCTTCTCTT
CTTCGACAATATCAAGACAACAACTGGAGGACAACCAACCAAACCACTTA
TCAAAATTACTACGAAGGAGTTCCAAAAAAACCCTCCACTACTGGAGGAA
TTCGTAAAGACGATAGACCAACGAAAGGTTCTGTGTCCAATCAGAGGGAC
GCGTTGGAATCAAGTCTAAGGGGATCCAGAGTCGGATCAAGACAAGAAGc
tttttccACACCACCTCACTTGCGCACTTCATACAAACTGAACTTCACAG
GTGAACCAATCAAACCCTCGACCAACGCAAATCCAGGCGATCGATCTTGG
CGAAATATACGCTATTGaaatttttatgtatttttgaaatgtttatgTAT
TTAATTTTATGAATGAGCtaaataattttgcataaaaaataaGTTAACCA
ACCATGGCAGTGACTCGGCTATGTATTCATTCGAATTGACTATGATTATG
AATGAAATGACATTAATGAAATTTCGACCGGTAAAATTTTGAGATCTCCA
CGAAGTTTTTTATGCCATCGAAACGCAAAGTGCGAGCTTCGAGTGAGACG
TATTAGCGAGCGTCGAGCTTTCTTGCTTGGCTATTCAAGAGAAAGGCTAG
ACCAAATCCTGTCCAATTTAAgagatgacgtcatcgatagTCAAAATCGA
ATTCGAGTTATAATTTGCCTTGATTGTCTGTAACTTTTGAATTAGTTTCT
TGATTTcgattttcaaacaaatttaaGAACTATGTTGGACGCTAGAAACA
GTCAAAGATGGCTTCGAAACCTtcgattttgctaaaaattcaGTTAAAAA
ACGCTTATGAAGGCCTTTTATGGAGAGTCGGGATAAGATTGAAAGACTTT
TACAAATTGTCCACGTGTATTATCAGAGTGGGATCTTCCCAAAACAAATA
CGTCATCATAAAGAATCTGATGACGTTAAGGCCGCTCTCCACTTTCACAC
GAAATAATCGAAAACcttttaacgtttttgtaaggtcatcgGTCGGTTGc
aaaatgaagaaattccaTTGGGcaaatctgacgtaacggttcaaaaaaat
tgaacttcTTTCAATACTTTTTATTT
Run BLAST on NCBI

protein sequence of TCONS_00062902-protein

>TCONS_00062902-protein ID=TCONS_00062902-protein|Name=TCONS_00062902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
VSHLVRELLEEYIRKVILFMIDREFSSGIEMPYISHHFQGKEREGAEVPW
GTEPKERLGVGKGSKLTTYGWMFQGQKGLPAQSYRNHTTNHFDPQNWRNK
SQYSETFFTPQMYSRHQIQKFTANRNHRPHPKELIWPMEPFKGYMIWKPK
LVPDDGEIKKYSAPSLLRQYQDNNWRTTNQTTYQNYYEGVPKKPSTTGGI
RKDDRPTKGSVSNQRDALESSLRGSRVGSRQEAFSTPPHLRTSYKLNFTG
EPIKPSTNANPGDRSWRNIRY
Run BLAST on NCBI

transcript from alignment at scaffold_373:83786..86450-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062902 ID=TCONS_00062902|Name=TCONS_00062902|organism=Clytia hemisphaerica|type=transcript|length=2665bp|location=Sequence derived from alignment at scaffold_373:83786..86450- (Clytia hemisphaerica)
TTGTGTCTCACTTGGTGAGAGAATTGCTAGAAGAATACATCAGAAAGGTT
ATACTATTTATGATAGATAGAGAGTTTTCATCAGGAATCGAAATGCCATA
TATTTCCCATCATTTTCAAGGCAAAGAACGAGAAGGTGCAGAAGTTCCAT
GGGGAACAGAACCAAAAGAACGTTTGGGTAATTCTAAATATCTCTAGTTT
ATATCTTTATAATACATGTTTTCTTTCGGAATCAAATTGAAACTTTTGAA
TGTTAACATTTTAGGCGTTGGCAAAGGGAGCAAATTAACGACATACGGAT
GGATGTTTCAAGGACAAAAAGGTTTACCTGCACAATCATATAGGTATTAA
CATGCTGCCTGTCTACGTGTTTCTTTCGTGTTCTGACATGTTTCTTTTGT
TTTAGTGAAAAAGTGCTTTTCGGAGTGATTTTTACTGTGGAAATGTCATT
ACCTTGCTTTTAGAAATCACACAACTAATCACTTTGACCCACAGAACTGG
CGAAATAAAAGCCAGTACTCTGAAACATTCTTCACTCCGCAAATGTACAG
TCGTCATCAAATACAGAAATTCACGGCCAATCGTAATCACCGTCCACACC
CTAAGGAGCTAATTTGGCCTATGGAACCATTCAAGGTAAACATACGCCCA
TTCGTCCTCACAAGATTTTTTTTGTGTATGATAAAGCTTTCTTAAAGTCC
CGTAATAAGATCGGCTGCTGGCATCCACTAACGGATTTGTGCTCCTTATT
ATACTACCTGGAGTTTTGTAGATGTCTGTAATTCAGACTAGTAATAAAAT
TCCTCTGTATGTTGCTAATGCAATAGCATAAGCAAACTGGTATTCCAAGC
TTCCAAACTTGTAAGACGCAATTGGAAGACAAATCAAATGATGATTATAA
ATAAGCCAAAATCATATCGAGTTGGATACCAGGAAACGCAAAAACCTGAC
CCCCTTCATTCATGTTTTGGGAAATAGGTATCAAAACTAAAGCCCGACAT
CCTGAAACAATATCATAACATCAATGAACTTTCAAATTTTGACGAATTTT
AAATACCCCTCTCTCCAAACCATTACTCATTACAAAAAAAAATTTATTTT
CAAGGGGTATATGATTTGGAAACCTAAACTTGTTCCGGATGATGGTGAAA
TCAAAAAGTACAGCGCTCCTTCTCTTCTTCGACAATATCAAGACAACAAC
TGGAGGACAACCAACCAAACCACTTATCAAAATTACTACGAAGGAGTTCC
AAAAAAACCCTCCACTACTGGAGGAATTCGTAAAGACGATAGACCAACGA
AAGGTTCTGTGTCCAATCAGAGGGACGCGTTGGAATCAAGTCTAAGGGGA
TCCAGAGTCGGATCAAGACAAGAAGGTAACAAGATATGATGACATGAAAA
ACGTTGACTTCTGATAAAAAATTCATATCTTCTGCTATACACTTGGGATT
TTCGAGTTTATACTGTTGTTTTATCGTGGAAACTACAGCGTTTACTTGGA
ATATGATCAAATAACAGAACACATTTTCGACCGTAGCCGCCAATTGCTGC
GTGGGCAATTTTTGTCCGTTTTATTTTACCAAACTGAAACCCTTCCAGTC
TTTTGTTCGCACCTATAGACAATAGAAAGAGTGTAAAAAAAGGATTGGAT
TGAGTTTAGGGGGATGAATAAATAATAAAGTGGCATGCACCTGACCGCGC
GACTACGGTCGAAAAAGTGTATTAATTTTCTTCATTCAATTTAGCTTTAT
GAGATGACATGTTTACACTCTTTTGCTTTCCTTTTCAGCTTTTTCCACAC
CACCTCACTTGCGCACTTCATACAAACTGAACTTCACAGGTGAACCAATC
AAACCCTCGACCAACGCAAATCCAGGCGATCGATCTTGGCGAAATATACG
CTATTGAAATTTTTATGTATTTTTGAAATGTTTATGTATTTAATTTTATG
AATGAGCTAAATAATTTTGCATAAAAAATAAGTTAACCAACCATGGCAGT
GACTCGGCTATGTATTCATTCGAATTGACTATGATTATGAATGAAATGAC
ATTAATGAAATTTCGACCGGTAAAATTTTGAGATCTCCACGAAGTTTTTT
ATGCCATCGAAACGCAAAGTGCGAGCTTCGAGTGAGACGTATTAGCGAGC
GTCGAGCTTTCTTGCTTGGCTATTCAAGAGAAAGGCTAGACCAAATCCTG
TCCAATTTAAGAGATGACGTCATCGATAGTCAAAATCGAATTCGAGTTAT
AATTTGCCTTGATTGTCTGTAACTTTTGAATTAGTTTCTTGATTTCGATT
TTCAAACAAATTTAAGAACTATGTTGGACGCTAGAAACAGTCAAAGATGG
CTTCGAAACCTTCGATTTTGCTAAAAATTCAGTTAAAAAACGCTTATGAA
GGCCTTTTATGGAGAGTCGGGATAAGATTGAAAGACTTTTACAAATTGTC
CACGTGTATTATCAGAGTGGGATCTTCCCAAAACAAATACGTCATCATAA
AGAATCTGATGACGTTAAGGCCGCTCTCCACTTTCACACGAAATAATCGA
AAACCTTTTAACGTTTTTGTAAGGTCATCGGTCGGTTGCAAAATGAAGAA
ATTCCATTGGGCAAATCTGACGTAACGGTTCAAAAAAATTGAACTTCTTT
CAATACTTTTTATTT

Coding sequence (CDS) from alignment at scaffold_373:83786..86450-

>TCONS_00062902 ID=TCONS_00062902|Name=TCONS_00062902|organism=Clytia hemisphaerica|type=CDS|length=4080bp|location=Sequence derived from alignment at scaffold_373:83786..86450- (Clytia hemisphaerica)
CTTTTTCCACACCACCTCACTTGCGCACTTCATACAAACTGAACTTCACA
GGTGAACCAATCAAACCCTCGACCAACGCAAATCCAGGCGATCGATCTTG
GCGAAATATACGCTATTGAGGGTATATGATTTGGAAACCTAAACTTGTTC
CGGATGATGGTGAAATCAAAAAGTACAGCGCTCCTTCTCTTCTTCGACAA
TATCAAGACAACAACTGGAGGACAACCAACCAAACCACTTATCAAAATTA
CTACGAAGGAGTTCCAAAAAAACCCTCCACTACTGGAGGAATTCGTAAAG
ACGATAGACCAACGAAAGGTTCTGTGTCCAATCAGAGGGACGCGTTGGAA
TCAAGTCTAAGGGGATCCAGAGTCGGATCAAGACAAGAAGAAATCACACA
ACTAATCACTTTGACCCACAGAACTGGCGAAATAAAAGCCAGTACTCTGA
AACATTCTTCACTCCGCAAATGTACAGTCGTCATCAAATACAGAAATTCA
CGGCCAATCGTAATCACCGTCCACACCCTAAGGAGCTAATTTGGCCTATG
GAACCATTCAAGGCGTTGGCAAAGGGAGCAAATTAACGACATACGGATGG
ATGTTTCAAGGACAAAAAGGTTTACCTGCACAATCATATAGGTGTCTCAC
TTGGTGAGAGAATTGCTAGAAGAATACATCAGAAAGGTTATACTATTTAT
GATAGATAGAGAGTTTTCATCAGGAATCGAAATGCCATATATTTCCCATC
ATTTTCAAGGCAAAGAACGAGAAGGTGCAGAAGTTCCATGGGGAACAGAA
CCAAAAGAACGTTTGGCTTTTTCCACACCACCTCACTTGCGCACTTCATA
CAAACTGAACTTCACAGGTGAACCAATCAAACCCTCGACCAACGCAAATC
CAGGCGATCGATCTTGGCGAAATATACGCTATTGAGGGTATATGATTTGG
AAACCTAAACTTGTTCCGGATGATGGTGAAATCAAAAAGTACAGCGCTCC
TTCTCTTCTTCGACAATATCAAGACAACAACTGGAGGACAACCAACCAAA
CCACTTATCAAAATTACTACGAAGGAGTTCCAAAAAAACCCTCCACTACT
GGAGGAATTCGTAAAGACGATAGACCAACGAAAGGTTCTGTGTCCAATCA
GAGGGACGCGTTGGAATCAAGTCTAAGGGGATCCAGAGTCGGATCAAGAC
AAGAAGAAATCACACAACTAATCACTTTGACCCACAGAACTGGCGAAATA
AAAGCCAGTACTCTGAAACATTCTTCACTCCGCAAATGTACAGTCGTCAT
CAAATACAGAAATTCACGGCCAATCGTAATCACCGTCCACACCCTAAGGA
GCTAATTTGGCCTATGGAACCATTCAAGGCGTTGGCAAAGGGAGCAAATT
AACGACATACGGATGGATGTTTCAAGGACAAAAAGGTTTACCTGCACAAT
CATATAGGTGTCTCACTTGGTGAGAGAATTGCTAGAAGAATACATCAGAA
AGGTTATACTATTTATGATAGATAGAGAGTTTTCATCAGGAATCGAAATG
CCATATATTTCCCATCATTTTCAAGGCAAAGAACGAGAAGGTGCAGAAGT
TCCATGGGGAACAGAACCAAAAGAACGTTTGGCTTTTTCCACACCACCTC
ACTTGCGCACTTCATACAAACTGAACTTCACAGGTGAACCAATCAAACCC
TCGACCAACGCAAATCCAGGCGATCGATCTTGGCGAAATATACGCTATTG
AGGGTATATGATTTGGAAACCTAAACTTGTTCCGGATGATGGTGAAATCA
AAAAGTACAGCGCTCCTTCTCTTCTTCGACAATATCAAGACAACAACTGG
AGGACAACCAACCAAACCACTTATCAAAATTACTACGAAGGAGTTCCAAA
AAAACCCTCCACTACTGGAGGAATTCGTAAAGACGATAGACCAACGAAAG
GTTCTGTGTCCAATCAGAGGGACGCGTTGGAATCAAGTCTAAGGGGATCC
AGAGTCGGATCAAGACAAGAAGAAATCACACAACTAATCACTTTGACCCA
CAGAACTGGCGAAATAAAAGCCAGTACTCTGAAACATTCTTCACTCCGCA
AATGTACAGTCGTCATCAAATACAGAAATTCACGGCCAATCGTAATCACC
GTCCACACCCTAAGGAGCTAATTTGGCCTATGGAACCATTCAAGGCGTTG
GCAAAGGGAGCAAATTAACGACATACGGATGGATGTTTCAAGGACAAAAA
GGTTTACCTGCACAATCATATAGGTGTCTCACTTGGTGAGAGAATTGCTA
GAAGAATACATCAGAAAGGTTATACTATTTATGATAGATAGAGAGTTTTC
ATCAGGAATCGAAATGCCATATATTTCCCATCATTTTCAAGGCAAAGAAC
GAGAAGGTGCAGAAGTTCCATGGGGAACAGAACCAAAAGAACGTTTGGCT
TTTTCCACACCACCTCACTTGCGCACTTCATACAAACTGAACTTCACAGG
TGAACCAATCAAACCCTCGACCAACGCAAATCCAGGCGATCGATCTTGGC
GAAATATACGCTATTGAGGGTATATGATTTGGAAACCTAAACTTGTTCCG
GATGATGGTGAAATCAAAAAGTACAGCGCTCCTTCTCTTCTTCGACAATA
TCAAGACAACAACTGGAGGACAACCAACCAAACCACTTATCAAAATTACT
ACGAAGGAGTTCCAAAAAAACCCTCCACTACTGGAGGAATTCGTAAAGAC
GATAGACCAACGAAAGGTTCTGTGTCCAATCAGAGGGACGCGTTGGAATC
AAGTCTAAGGGGATCCAGAGTCGGATCAAGACAAGAAGAAATCACACAAC
TAATCACTTTGACCCACAGAACTGGCGAAATAAAAGCCAGTACTCTGAAA
CATTCTTCACTCCGCAAATGTACAGTCGTCATCAAATACAGAAATTCACG
GCCAATCGTAATCACCGTCCACACCCTAAGGAGCTAATTTGGCCTATGGA
ACCATTCAAGGCGTTGGCAAAGGGAGCAAATTAACGACATACGGATGGAT
GTTTCAAGGACAAAAAGGTTTACCTGCACAATCATATAGGTGTCTCACTT
GGTGAGAGAATTGCTAGAAGAATACATCAGAAAGGTTATACTATTTATGA
TAGATAGAGAGTTTTCATCAGGAATCGAAATGCCATATATTTCCCATCAT
TTTCAAGGCAAAGAACGAGAAGGTGCAGAAGTTCCATGGGGAACAGAACC
AAAAGAACGTTTGGCTTTTTCCACACCACCTCACTTGCGCACTTCATACA
AACTGAACTTCACAGGTGAACCAATCAAACCCTCGACCAACGCAAATCCA
GGCGATCGATCTTGGCGAAATATACGCTATTGAGGGTATATGATTTGGAA
ACCTAAACTTGTTCCGGATGATGGTGAAATCAAAAAGTACAGCGCTCCTT
CTCTTCTTCGACAATATCAAGACAACAACTGGAGGACAACCAACCAAACC
ACTTATCAAAATTACTACGAAGGAGTTCCAAAAAAACCCTCCACTACTGG
AGGAATTCGTAAAGACGATAGACCAACGAAAGGTTCTGTGTCCAATCAGA
GGGACGCGTTGGAATCAAGTCTAAGGGGATCCAGAGTCGGATCAAGACAA
GAAGAAATCACACAACTAATCACTTTGACCCACAGAACTGGCGAAATAAA
AGCCAGTACTCTGAAACATTCTTCACTCCGCAAATGTACAGTCGTCATCA
AATACAGAAATTCACGGCCAATCGTAATCACCGTCCACACCCTAAGGAGC
TAATTTGGCCTATGGAACCATTCAAGGCGTTGGCAAAGGGAGCAAATTAA
CGACATACGGATGGATGTTTCAAGGACAAAAAGGTTTACCTGCACAATCA
TATAGGTGTCTCACTTGGTGAGAGAATTGCTAGAAGAATACATCAGAAAG
GTTATACTATTTATGATAGATAGAGAGTTTTCATCAGGAATCGAAATGCC
ATATATTTCCCATCATTTTCAAGGCAAAGAACGAGAAGGTGCAGAAGTTC
CATGGGGAACAGAACCAAAAGAACGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039393XLOC_039393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062902-exon-scaffold_373-1575043694:86274..86450TCONS_00062902-exon-scaffold_373-1575043694:86274..86450Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1575043694:86108..86186TCONS_00062902-exon-scaffold_373-1575043694:86108..86186Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1575043694:85816..85987TCONS_00062902-exon-scaffold_373-1575043694:85816..85987Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1575043694:85076..85346TCONS_00062902-exon-scaffold_373-1575043694:85076..85346Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1575043694:83786..84662TCONS_00062902-exon-scaffold_373-1575043694:83786..84662Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1510915933:86274..86450TCONS_00062902-exon-scaffold_373-1510915933:86274..86450Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1510915933:86108..86186TCONS_00062902-exon-scaffold_373-1510915933:86108..86186Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1510915933:85816..85987TCONS_00062902-exon-scaffold_373-1510915933:85816..85987Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1510915933:85076..85346TCONS_00062902-exon-scaffold_373-1510915933:85076..85346Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1510915933:83786..84662TCONS_00062902-exon-scaffold_373-1510915933:83786..84662Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1491911889:86274..86450TCONS_00062902-exon-scaffold_373-1491911889:86274..86450Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1491911889:86108..86186TCONS_00062902-exon-scaffold_373-1491911889:86108..86186Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1491911889:85816..85987TCONS_00062902-exon-scaffold_373-1491911889:85816..85987Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1491911889:85076..85346TCONS_00062902-exon-scaffold_373-1491911889:85076..85346Clytia hemisphaericaexon
TCONS_00062902-exon-scaffold_373-1491911889:83786..84662TCONS_00062902-exon-scaffold_373-1491911889:83786..84662Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062902-proteinTCONS_00062902-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:83786..86450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311436	0.278391	0.176312	0.25874	361.82	271.644	164.164	162.154	65.9821	94.2719	50.4579	52.3722	0.483295	0.250953	0.162107	0.12652	1.42225	1.97696	0.496595	0.433042	3.1366	2.64371	1.13077	0.595179	3.70599	2.33764	16.1208	18.5338	0.230446	0.117394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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