TCONS_00006216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006216
Unique NameTCONS_00006216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006216 ID=TCONS_00006216|Name=TCONS_00006216|organism=Clytia hemisphaerica|type=transcript|length=3550bp
gtcTGAAATAGACAAATTACACTAGCTTTTCTTATCTCTGTGTCTTCTCT
ACGCTTCGAAGCTGACTCAGGATTTGAGAGAAGCTTTTATATGAACCAGC
TtgttctatttttagtaatccGCCATATAAGGAGATATCCAGCGACAACA
TATCGCGAGAGCCAATCAGAATCGTTTCTATTCGTAACGTCggcttctga
ttggttcttgAGAACAATCAAATAACAACGGTAAAAACATTTACCGTTCT
CGTTTTAAACGCTTTGTGATTGGTTAATAAACAAAAGCAAAGTGTTTTGA
TTGGCTACAAATATTCTCTTCATACACTTTTAAATGTGAAGCGAACATTA
TAGTAGACTTGTGTGTGTTGAGGAAATTGTAATATTATCGAAAAGCTAGC
TGGatttgcttgaaaatgaaaggaGCTTTTGGAAAGATATAAATTCCACG
GTGATATAAAATTTGTAGTCGAGTTATATTATTAGACTTGTCAAGACAAG
ACATGTGTAGAATTtgcttatatattttttcatttttctttttcaaggta
agaaaaaatacaaaagaaatataagaGAGAAATCAAAATGTATTTAGAAA
TGGATGCTTCTTATGCGCTACCGTCGtcatcaatcttccaagaattGCAA
AGGATTCACGATACTGGATTCTTCAGTCCTGTGCATTCTCTGGAAGATAA
GTTTCAACAGAATCGTTTGGAGATGGACCGTTACCTTGGTGACGAACCTA
ACTCACGTAACAATGGTTTAAGTGGTAAACAAGATGGCAGCACAGTAGCG
TGGAATGAATTTCTCGTACCCGACGAAATGGACAATGATGTAAATGGTCT
GTCATATGATTTAGAACTGCTTGCTCCTTACTTCGATATGTACAATATGA
CGAATAAAGTACAAGTCGTTCTTCCTGAAACACCTACTTCTGATCTCGAT
TTTCCAGTTTTCAAACGAAACAATGCaactaaattttctttcaatcatAC
ACAAAATATCGAAACTTCACTATACTCTGATCACGCACTTATTGTTAAAC
CGGTCATTCTTACACCACCAAGTTCACCCGAAAGCGTTTCCAGCGGTGGC
TCCGGAAATACTTCACCCAGAGGACTAAAACCAACCAAAGGACAAAGGAT
ACAAAAACGTGgtagtggtggtggtggtggtggacCGAACCATGCTGCCA
AACTATTAGACTCCATTACACTTAATCCTGATAATTCTTTAAATCTTGCA
GACTTAGCTAATCTGGATTCTAAGAAACGAATTCACAGATGTCAGTTTAA
CGGTTGCAGAAAAGTATATACCAAATCTTCGCATTTAAAAGCACATCAAA
GGACACATACCGGTGAAAAACCTTATAAATGTACTTGGGAAGGTTGTCAT
TGGAGGTTTGCACGATCAGATGAATTAACGAGACATTATCGTAAACATAC
TGGAGCCAAACCGTTTAAATGTTCAGCATGTGATCGATGTTTTTCACGTT
CAGACCATTTAGCACTTCACATGAAACGCCATGGTAACGTGAATTCTCTA
CAACACAAAAGTAATTCTGTCAACAACAACTTGAATAATActaccaaaaa
tcaaattctGAATAATACAGCACAGAATAATCCAACCAAACTCTTATCCT
CTCCCATGAATCACTCGAAATTAACTTTAACTGCAGCCGCGACTGCCGCT
GTTGCTTAGACTTGcatcaaaattttagtaaatcaATAGTTCATATTAGC
AGATCATGATTtagttttttatgttttctttcttttgatttttgataatt
tttttttgtcttcttGAACAAAATTAGTACAATATAGATTATTTGCCAAA
TAACTTAGTAAAAAAGATAGGTAgctcagaaatttttttttatttctaaa
caaaacattaggaaattatattttttgtgtCATTTCATTATGATGCAGGA
TTTCTTTACATTCGTTCATAATATCTGTAGTGTTCGATAAAATTTTAGTG
catatttttcactttattaTTATAATAGGGTTTCTCGTGTTATTCTTTTT
CAGTTTACtcagttttccccattttttgtGATAAATAATTTGAAGGGATA
TAACAGGTCATAAAAGAGAGGAATAGATGGAGGGAATatcctttctttct
tttcctaTAAGGAGAACACATTTTAGAACCTTTTGAAATCCTTTCCAAAG
TCTTTAGTAGTAACAAGACCTTTCCTATAAAGAATAAACTCATCCATTTT
TTACACCAATAAGAAaaccttttcttttcattttatgGATTTCGTATTGA
CtcggaaaaaaaagaagaatatgaACGTGCGAATCCGTTGTTTTTCTATA
CCGAAACATGTGCAGAGAGAGACCTAAAGCAGGCAttattttcttaatat
tttgtttaCACAGTTCACTACCAGTTacgttataattttttttgttagaa
ATTTTAACTTACATACAACATGGCGGGATCAGTAATAATATCAAAACACA
TAATACTATTTTTCTATTGATAATTAtctttattatattatattaacaaC
ACAATTATTTATAAATGCACTGTTATTTTTTTACCTCTCTCTCTCATTTC
TCTCAGGCTTCACATGTTTTTAAGTTTGTttcacattttttttgtttcat
ttttcaaattattctatcaatttcttttatatattttcagttCAAAATTA
TTCCCTAGTGtttccttattttcaatatttcacaaCGTTGAGTTCACAAT
TACTACGGAttttaaagtaaacaaaactcTTCAAACACTTCAAACCTACA
CATACCAACCCTTAGTTTTTTATGTGGTTAGCTCGTAGTGACCAagtgtt
ttctcttttttgtcgTTTCAGGAAAAATTCTACTCTGCTTTCATTTACAT
GTCAAGCCAGGGTagaattttcctttttcgtTGTGTTTTTTGCTCCATTT
TCTTCTGCCAACTGCTTTGTTATTAAATATATTACACCTTGATACTTACC
TTAACCCAGCTGTCACGCGACGTTGcgtcaacgtttatctaacgtttacA
ACGTCTATacaacgttagattaacgttaaaacaacgttgtgtgtcagctg
gcaATGCCAAACCAAAACAACTACAGTAAATCGATATGTATATAATTTGT
ATTTAGGTAgtttaagaagaaaaaaatttagtaatatTATTAATTAGTGT
ATATGAATGAAttgtaaagtaaaaaaatattaaaaaaagatcTTCGGAGC
TCTTGTTGGAAAAATCCAatctaaaattgaaataaaaagaaattaaaact
cATTTATCATCTTGTTCTATCTTCATTTgtccttaacatgttcttatttt
cgccattttttgggtAGTTTTGTGcgttatgtttttatatagtttgttct
tataaaaaaacgtgtatattaatttttttcgtAAATTTCGTTCAATTGTC
AACTacatataagaaaaataagcccaaaaacaccaaaaggTTTTAAGTGC
TGACAAGGATAAAACagaaattgattatttttttggtGATGACATCGTTG
Run BLAST on NCBI

protein sequence of TCONS_00006216-protein

>TCONS_00006216-protein ID=TCONS_00006216-protein|Name=TCONS_00006216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MYLEMDASYALPSSSIFQELQRIHDTGFFSPVHSLEDKFQQNRLEMDRYL
GDEPNSRNNGLSGKQDGSTVAWNEFLVPDEMDNDVNGLSYDLELLAPYFD
MYNMTNKVQVVLPETPTSDLDFPVFKRNNATKFSFNHTQNIETSLYSDHA
LIVKPVILTPPSSPESVSSGGSGNTSPRGLKPTKGQRIQKRGSGGGGGGP
NHAAKLLDSITLNPDNSLNLADLANLDSKKRIHRCQFNGCRKVYTKSSHL
KAHQRTHTGEKPYKCTWEGCHWRFARSDELTRHYRKHTGAKPFKCSACDR
CFSRSDHLALHMKRHGNVNSLQHKSNSVNNNLNNTTKNQILNNTAQNNPT
KLLSSPMNHSKLTLTAAATAAVA
Run BLAST on NCBI

transcript from alignment at sc0000066:40019..44389+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006216 ID=TCONS_00006216|Name=TCONS_00006216|organism=Clytia hemisphaerica|type=transcript|length=4371bp|location=Sequence derived from alignment at sc0000066:40019..44389+ (Clytia hemisphaerica)
gtcTGAAATAGACAAATTACACTAGCTTTTCTTATCTCTGTGTCTTCTCT ACGCTTCGAAGCTGACTCAGGATTTGAGAGAAGCTTTTATATGAACCAGC TtgttctatttttagtaatccGCCATATAAGGAGATATCCAGCGACAACA TATCGCGAGAGCCAATCAGAATCGTTTCTATTCGTAACGTCggcttctga ttggttcttgAGAACAATCAAATAACAACGGTAAAAACATTTACCGTTCT CGTTTTAAACGCTTTGTGATTGGTTAATAAACAAAAGCAAAGTGTTTTGA TTGGCTACAAATATTCTCTTCATACACTTTTAAATGTGAAGCGAACATTA TAGTAGACTTGTGTGTGTTGAGGAAATTGTAATATTATCGAAAAGCTAGC TGGatttgcttgaaaatgaaaggaGCTTTTGGAAAGATATAAATTCCACG GTGATATAAAATTTGTAGTCGAGTTATATTATTAGACTTGTCAAGACAAG ACATGTGTAGAATTtgcttatatattttttcatttttctttttcaaggta agaaaaaatacaaaagaaatataagaGAGAAATCAAAATGTATTTAGAAA TGGATGCTTCTTATGCGCTACCGTCGtcatcaatcttccaagaattGCAA AGGATTCACGATACTGGATTCTTCAGTCCTGTGCATTCTCTGGAAGATAA GTTTCAACAGGTAAGAActcatgtttttgtttttacttgGAAGACGTTAC CACTTTTGCTTCAGTGTTTTTTTGCGCACATTTTTCATTGATACTTTTTC GCGGgtaaaatctttgtttattaTAAACTTGGAAACAGTGAAGCAGTGAG GCAAACAAAAGTGTTTTCGTGAAAAATATTTGCTGGAAAATTGTGCAAAA AAGGAAGACAGCAAGAAACGTGTTTCGTTGATAAAGCAATAACAGAAATG ATGTTTTTGCTTAGGGCAACATGAAAGTATTTTGATAAATAATGGGAGAG AAAATTCTTGTGATTTGACAAGCAAACGATTTTAATAAACTTTGATGTCG TCATCATTTTAGACTTATTTCATTCATATTTTCATGTGAAAAAGCGTAAT CTCATATATTTTTGCAAACTTATTTGAATGTAATTACTTTTGTGGATGAA TgttactgtttttttttctctttttgatgatgataattcTCGAAAgacca aaatgaaaaacttttcaattaTATCTGCTAAACGACTACTAAACATGTCG ATTTTCGATTATTGAAAACACACGTAGTTTTTTAGCAGTCAACTGTGCTT TTTTTTGTTCTCTGTAATCGTTGAGTTTTATGTTATAAAGTTTGTATAAG AATATAATGTTGAGGTGCTTTTTCTCTATCATCGATTCATGGCATTTTAC GTATGAATCAAAAAAGCATTGATTGATGAAAGAAATGAAATGTTCAATTT TGACCATTCAGACTTTGATTGAACTACCATTTATCATTGAGAGGTATACT CTATATAATCAATCATCTTTTGTCTATTTAGAATCGTTTGGAGATGGACC GTTACCTTGGTGACGAACCTAACTCACGTAACAATGGTTTAAGTGGTAAA CAAGATGGCAGCACAGTAGCGTGGAATGAATTTCTCGTACCCGACGAAAT GGACAATGATGTAAATGGTCTGTCATATGATTTAGAACTGCTTGCTCCTT ACTTCGATATGTACAATATGACGAATAAAGTACAAGTCGTTCTTCCTGAA ACACCTACTTCTGATCTCGATTTTCCAGTTTTCAAACGAAACAATGCaac taaattttctttcaatcatACACAAAATATCGAAACTTCACTATACTCTG ATCACGCACTTATTGTTAAACCGGTCATTCTTACACCACCAAGTTCACCC GAAAGCGTTTCCAGCGGTGGCTCCGGAAATACTTCACCCAGAGGACTAAA ACCAACCAAAGGACAAAGGATACAAAAACGTGgtagtggtggtggtggtg gtggacCGAACCATGCTGCCAAACTATTAGACTCCATTACACTTAATCCT GATAATTCTTTAAATCTTGCAGACTTAGCTAATCTGGATTCTAAGAAACG AATTCACAGATGTCAGTTTAACGGTTGCAGAAAAGTATATACCAAATCTT CGCATTTAAAAGCACATCAAAGGACACATACCGGTGAAAAACCTTATAAA TGTACTTGGGAAGGTTGTCATTGGAGGTTTGCACGATCAGATGAATTAAC GAGACATTATCGTAAACATACTGGAGCCAAACCGTTTAAATGTTCAGCAT GTGATCGATGTTTTTCACGTTCAGACCATTTAGCACTTCACATGAAACGC CATGGTAACGTGAATTCTCTACAACACAAAAGTAATTCTGTCAACAACAA CTTGAATAATActaccaaaaatcaaattctGAATAATACAGCACAGAATA ATCCAACCAAACTCTTATCCTCTCCCATGAATCACTCGAAATTAACTTTA ACTGCAGCCGCGACTGCCGCTGTTGCTTAGACTTGcatcaaaattttagt aaatcaATAGTTCATATTAGCAGATCATGATTtagttttttatgttttct ttcttttgatttttgataatttttttttgtcttcttGAACAAAATTAGTA CAATATAGATTATTTGCCAAATAACTTAGTAAAAAAGATAGGTAgctcag aaatttttttttatttctaaacaaaacattaggaaattatattttttgtg tCATTTCATTATGATGCAGGATTTCTTTACATTCGTTCATAATATCTGTA GTGTTCGATAAAATTTTAGTGcatatttttcactttattaTTATAATAGG GTTTCTCGTGTTATTCTTTTTCAGTTTACtcagttttccccattttttgt GATAAATAATTTGAAGGGATATAACAGGTCATAAAAGAGAGGAATAGATG GAGGGAATatcctttctttcttttcctaTAAGGAGAACACATTTTAGAAC CTTTTGAAATCCTTTCCAAAGTCTTTAGTAGTAACAAGACCTTTCCTATA AAGAATAAACTCATCCATTTTTTACACCAATAAGAAaaccttttcttttc attttatgGATTTCGTATTGACtcggaaaaaaaagaagaatatgaACGTG CGAATCCGTTGTTTTTCTATACCGAAACATGTGCAGAGAGAGACCTAAAG CAGGCAttattttcttaatattttgtttaCACAGTTCACTACCAGTTacg ttataattttttttgttagaaATTTTAACTTACATACAACATGGCGGGAT CAGTAATAATATCAAAACACATAATACTATTTTTCTATTGATAATTAtct ttattatattatattaacaaCACAATTATTTATAAATGCACTGTTATTTT TTTACCTCTCTCTCTCATTTCTCTCAGGCTTCACATGTTTTTAAGTTTGT ttcacattttttttgtttcatttttcaaattattctatcaatttctttta tatattttcagttCAAAATTATTCCCTAGTGtttccttattttcaatatt tcacaaCGTTGAGTTCACAATTACTACGGAttttaaagtaaacaaaactc TTCAAACACTTCAAACCTACACATACCAACCCTTAGTTTTTTATGTGGTT AGCTCGTAGTGACCAagtgttttctcttttttgtcgTTTCAGGAAAAATT CTACTCTGCTTTCATTTACATGTCAAGCCAGGGTagaattttcctttttc gtTGTGTTTTTTGCTCCATTTTCTTCTGCCAACTGCTTTGTTATTAAATA TATTACACCTTGATACTTACCTTAACCCAGCTGTCACGCGACGTTGcgtc aacgtttatctaacgtttacAACGTCTATacaacgttagattaacgttaa aacaacgttgtgtgtcagctggcaATGCCAAACCAAAACAACTACAGTAA ATCGATATGTATATAATTTGTATTTAGGTAgtttaagaagaaaaaaattt agtaatatTATTAATTAGTGTATATGAATGAAttgtaaagtaaaaaaata ttaaaaaaagatcTTCGGAGCTCTTGTTGGAAAAATCCAatctaaaattg aaataaaaagaaattaaaactcATTTATCATCTTGTTCTATCTTCATTTg tccttaacatgttcttattttcgccattttttgggtAGTTTTGTGcgtta tgtttttatatagtttgttcttataaaaaaacgtgtatattaattttttt cgtAAATTTCGTTCAATTGTCAACTacatataagaaaaataagcccaaaa acaccaaaaggTTTTAAGTGCTGACAAGGATAAAACagaaattgattatt tttttggtGATGACATCGTTG

Coding sequence (CDS) from alignment at sc0000066:40019..44389+

>TCONS_00006216 ID=TCONS_00006216|Name=TCONS_00006216|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at sc0000066:40019..44389+ (Clytia hemisphaerica)
ATGTATTTAGAAATGGATGCTTCTTATGCGCTACCGTCGtcatcaatctt
ccaagaattGCAAAGGATTCACGATACTGGATTCTTCAGTCCTGTGCATT
CTCTGGAAGATAAGTTTCAACAGAATCGTTTGGAGATGGACCGTTACCTT
GGTGACGAACCTAACTCACGTAACAATGGTTTAAGTGGTAAACAAGATGG
CAGCACAGTAGCGTGGAATGAATTTCTCGTACCCGACGAAATGGACAATG
ATGTAAATGGTCTGTCATATGATTTAGAACTGCTTGCTCCTTACTTCGAT
ATGTACAATATGACGAATAAAGTACAAGTCGTTCTTCCTGAAACACCTAC
TTCTGATCTCGATTTTCCAGTTTTCAAACGAAACAATGCaactaaatttt
ctttcaatcatACACAAAATATCGAAACTTCACTATACTCTGATCACGCA
CTTATTGTTAAACCGGTCATTCTTACACCACCAAGTTCACCCGAAAGCGT
TTCCAGCGGTGGCTCCGGAAATACTTCACCCAGAGGACTAAAACCAACCA
AAGGACAAAGGATACAAAAACGTGgtagtggtggtggtggtggtggacCG
AACCATGCTGCCAAACTATTAGACTCCATTACACTTAATCCTGATAATTC
TTTAAATCTTGCAGACTTAGCTAATCTGGATTCTAAGAAACGAATTCACA
GATGTCAGTTTAACGGTTGCAGAAAAGTATATACCAAATCTTCGCATTTA
AAAGCACATCAAAGGACACATACCGGTGAAAAACCTTATAAATGTACTTG
GGAAGGTTGTCATTGGAGGTTTGCACGATCAGATGAATTAACGAGACATT
ATCGTAAACATACTGGAGCCAAACCGTTTAAATGTTCAGCATGTGATCGA
TGTTTTTCACGTTCAGACCATTTAGCACTTCACATGAAACGCCATGGTAA
CGTGAATTCTCTACAACACAAAAGTAATTCTGTCAACAACAACTTGAATA
ATActaccaaaaatcaaattctGAATAATACAGCACAGAATAATCCAACC
AAACTCTTATCCTCTCCCATGAATCACTCGAAATTAACTTTAACTGCAGC
CGCGACTGCCGCTGTTGCTTAGATGTATTTAGAAATGGATGCTTCTTATG
CGCTACCGTCGtcatcaatcttccaagaattGCAAAGGATTCACGATACT
GGATTCTTCAGTCCTGTGCATTCTCTGGAAGATAAGTTTCAACAGAATCG
TTTGGAGATGGACCGTTACCTTGGTGACGAACCTAACTCACGTAACAATG
GTTTAAGTGGTAAACAAGATGGCAGCACAGTAGCGTGGAATGAATTTCTC
GTACCCGACGAAATGGACAATGATGTAAATGGTCTGTCATATGATTTAGA
ACTGCTTGCTCCTTACTTCGATATGTACAATATGACGAATAAAGTACAAG
TCGTTCTTCCTGAAACACCTACTTCTGATCTCGATTTTCCAGTTTTCAAA
CGAAACAATGCaactaaattttctttcaatcatACACAAAATATCGAAAC
TTCACTATACTCTGATCACGCACTTATTGTTAAACCGGTCATTCTTACAC
CACCAAGTTCACCCGAAAGCGTTTCCAGCGGTGGCTCCGGAAATACTTCA
CCCAGAGGACTAAAACCAACCAAAGGACAAAGGATACAAAAACGTGgtag
tggtggtggtggtggtggacCGAACCATGCTGCCAAACTATTAGACTCCA
TTACACTTAATCCTGATAATTCTTTAAATCTTGCAGACTTAGCTAATCTG
GATTCTAAGAAACGAATTCACAGATGTCAGTTTAACGGTTGCAGAAAAGT
ATATACCAAATCTTCGCATTTAAAAGCACATCAAAGGACACATACCGGTG
AAAAACCTTATAAATGTACTTGGGAAGGTTGTCATTGGAGGTTTGCACGA
TCAGATGAATTAACGAGACATTATCGTAAACATACTGGAGCCAAACCGTT
TAAATGTTCAGCATGTGATCGATGTTTTTCACGTTCAGACCATTTAGCAC
TTCACATGAAACGCCATGGTAACGTGAATTCTCTACAACACAAAAGTAAT
TCTGTCAACAACAACTTGAATAATActaccaaaaatcaaattctGAATAA
TACAGCACAGAATAATCCAACCAAACTCTTATCCTCTCCCATGAATCACT
CGAAATTAACTTTAACTGCAGCCGCGACTGCCGCTGTTGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003562XLOC_003562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006216-proteinTCONS_00006216-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006216-exon-sc0000066-1491911889:40019..40728TCONS_00006216-exon-sc0000066-1491911889:40019..40728Clytia hemisphaericaexon
TCONS_00006216-exon-sc0000066-1510915933:40019..40728TCONS_00006216-exon-sc0000066-1510915933:40019..40728Clytia hemisphaericaexon
TCONS_00006216-exon-sc0000066-1575043694:40019..40728TCONS_00006216-exon-sc0000066-1575043694:40019..40728Clytia hemisphaericaexon
TCONS_00006216-exon-sc0000066-1491911889:41550..44389TCONS_00006216-exon-sc0000066-1491911889:41550..44389Clytia hemisphaericaexon
TCONS_00006216-exon-sc0000066-1510915933:41550..44389TCONS_00006216-exon-sc0000066-1510915933:41550..44389Clytia hemisphaericaexon
TCONS_00006216-exon-sc0000066-1575043694:41550..44389TCONS_00006216-exon-sc0000066-1575043694:41550..44389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:40019..44389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.36415 5.60821 0.788506 0.658735 42.8168 31.7767 41.7833 45.3733 17.0605 116.585 33.7272 15.6231 33.5401 37.2506 60.0561 39.3755 22.6922 35.6056 38.445 34.9843 19.3395 22.4754 13.8075 19.485 20.926 21.3008 77.9215 81.7097 200.848 177.247
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00006216 vs. Swiss-Prot (Human)
Match: KLF7 (Krueppel-like factor 7 OS=Homo sapiens GN=KLF7 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.220e-52
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 3
Query: 1272 KKRIHRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCTWEGCHWRFARSDELTRHYRKHTGAKPFKCSACDRCFSRSDHLALHMKRH 1532
            KKR+HRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKC+WEGC WRFARSDELTRHYRKHTGAKPFKC+ CDRCFSRSDHLALHMKRH
Sbjct:  215 KKRVHRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRH 301          
The following BLAST results are available for this feature:
BLAST of TCONS_00006216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLF71.220e-5294.25Krueppel-like factor 7 OS=Homo sapiens GN=KLF7 PE=... [more]
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