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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062714 ID=TCONS_00062714|Name=TCONS_00062714|organism=Clytia hemisphaerica|type=transcript|length=832bpRun BLAST on NCBI transcript from alignment at scaffold_371:44696..67689- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062714 ID=TCONS_00062714|Name=TCONS_00062714|organism=Clytia hemisphaerica|type=transcript|length=22994bp|location=Sequence derived from alignment at scaffold_371:44696..67689- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062714 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2) HSP 1 Score: 290.812 bits (743), Expect = 3.374e-89 Identity = 148/262 (56.49%), Postives = 190/262 (72.52%), Query Frame = 3
Query: 6 GLDKNSIGKKLQGMCLRALKSLQALNLIEMKEGDTLHSTEIGRLMARYCITYETVKLFASATGTDNIQDLLVLLSKAKEFNDIVLRQNERTILNTLNKDKHRATIRFPMSGKIKTTENKVNCLVQATLGCLSIVDFPLQQDITKIFRIGQRICKFLMEYMFLN-GSFQSCLAAIILYKCVRSRLWENSKFVSRQLERIGPSLSSALVNAGIISFKKIEETNSRELELIVNRHPPFGDQIKTLVAGLPKLDVKIEQ--RYSNS 782
GL+K+ I KLQ +CL+ L L +L+LI+M EG TE GRLMA Y IT+ETVK F + +G + + DL+ L++ KEF DI LR NE+ LNTLNKD +R TIRFPM G+IKT E KVNCL+QA LGC+ I DF L QD KIFR G RI ++L +++ F L ++IL KC R +LWENS VS+QLE+IG +LS+A+VNAG+ SFKKIEET++RELELI+NRHPPFG QIK V LPK ++K+EQ RYS++
Sbjct: 740 GLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITFETVKKFYTISGKETLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKETVMYLPKYELKVEQITRYSDT 1001 The following BLAST results are available for this feature:
BLAST of TCONS_00062714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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