TCONS_00062636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062636
Unique NameTCONS_00062636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=transcript|length=715bp
CTTTGCtctattctcttttttttattattattatttttattattgttatt
atttgatttgattttttttgttaaacCCACAACCTTTCTATAACTTATAA
GAACTTTTTGTCCAATCCCCCTACTCTGACCTATCTATTTACAACCCATG
CCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGCTAAGAACCA
CCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACATTAAATGCA
ACAATACCACAGACAATGACTATACCAAACTCATATCATCAGATGAAACA
TGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCTTCAGTCCTC
TGATGAAGAACTCAAGCTACTCACCCAAGGTAATAATGCTCCCCATGTCA
CAAGAAACAAGCAACTGTCAATCACCAGAACAAAGACGGTAATGTATGGA
TCGCACAACATAGCTAATCTTATCACCAAAGACTGGAATGAAATCCACCC
CCATCTACCTTCCCTTGACCAAATTACCAGCAAATCCACTTTCAAGGCCC
ACCTTCATGCTTACCTTCTCACTAAACTTGCCTCAAGTTAAATCCCTTCC
CTGACTCCCAAGGTTTCTTTGTAGATgtatatattattatttttattatc
attGTTATTATCACTATTACCtttttttcctttgtttcttATTTTGAATT
ATTCCCCAATTATAT
Run BLAST on NCBI

protein sequence of TCONS_00062636-protein

>TCONS_00062636-protein ID=TCONS_00062636-protein|Name=TCONS_00062636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MPVKFPCGICKKPVAKNHRAIQCDNCSYWVHIKCNNTTDNDYTKLISSDE
TWSCLKCIQTAIPFLQSSDEELKLLTQGNNAPHVTRNKQLSITRTKTVMY
GSHNIANLITKDWNEIHPHLPSLDQITSKSTFKAHLHAYLLTKLASS
Run BLAST on NCBI

transcript from alignment at scaffold_370:22926..26124-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=transcript|length=3199bp|location=Sequence derived from alignment at scaffold_370:22926..26124- (Clytia hemisphaerica)
CTTTGCTCTATTCTCTTTTTTTTATTATTATTATTTTTATTATTGTTATT
ATTTGATTTGATTTTTTTTGTTAAACCCACAACCTTTCTATAACTTATAA
GAACTTTTTGTCCAATCCCCCTACTCTGACCTATCTATTTACAACCCATG
CCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGCTAAGAACCA
CCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACATTAAATGCA
ACAATACCACAGACAATGACTATACCAAACTCATATCATCAGATGAAACA
TGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCTTCAGTCCTC
TGATGAAGAACTCAAGCTACTCACCCAAGGTAAGTCTGCTTCTGATCTTG
ACCTATTTGACCCTGATGTGAATATTAATGTCCAATTCTTTAAAGACATT
GATAAGGTCCTTGAAAATGAAGAGTTTAGTGACACTCAAATATCCTCTTT
TTATCGTACACTCAGTGAACTGAATGAACTCAACATAGACAACTCCCAAT
CTCTTTCTTTATTGCATTTGAACATTGCTTCTCTCAATTTACACCAGGAC
GAGCTTAGAACTCTTATCAAAAATTGTGATACAAAATTTAACTTTATAGG
AATTTCTGAAACTGGATTCTCAAAATCTACCCCCAAATCTATTAATCTTG
AGGATTACATACCACTGGACACCCCAACTAAATCAAAAAAGGGAGGCACT
CGTCTCTACATCAAAAATAACTTTCATTACATCCCCAGACCTGATTTAGA
ATTAATCAAAGACATGGAGCTTGAGTCTACAGCTGTTGAAGTAATAAATG
AAAACAAAAATTTCATTGTTATGGTCATCTACCGACATCCCAATATGGAT
ATTTCAGAATTCAATGTTTTGTACTCCAACCTCTTAGACAAAATCTCAAA
AGAAAATAAACAAGCCTTTATCATGGGTGATTTTAACATAGATCTACTAA
AACATGAATCCCATGAAGAAACAAGCAAATTTCTAAACTCTAACTTTTCT
AACTGCTTTAAACCTCTTATTTCTGGACCAACAAGAATCACTCCCCACAG
CAAAACACTTATCGACAACATTTTTACCAATAGTCTCAAAGAAGTTGTTC
AGGCTGGAAACTTGATTACCTCAATTTCGGACCATCTACCTCAGTATGCT
ATTCTTAACTGGAATGTCAAAACCAAACAAAATCAAAAAGCTAAAATCTT
TAAAAGAGATTTCAGAAAATTTGATCGAAACAATTTTTTTCATGAGTTCT
CAGTTATCTCTTGGGAAAACCTTTTTGCTGAAAAAACACCTGGTGAGAAA
CTCAACATCTTTATCAATCAAACAACCGAAGTAATTGACAGCCATGCACC
AATGAAATCTTTTAAAAACAAATATACAAAAGCTCGAAAACCTTGGATAA
CAGCAGGCATACTGAAGTCTATTAACACAAGAGATATCCTCCAAAAAAAA
TACTTTAGATCCAAAACACCTGCCTTAAAGCAAGAAAAACACAAGGCTTA
TAAAAAATACAAAAATCTTCTTCTGAAAATAATGAGACAAAGTAAAGCTG
AATATTACAAAAAATATTTCAATGACCATAAAACCAATTTGAAACTTGTC
TGGGGTGCCATCCATGAAGTGACCAACAGCAAATCTAAATCTGACTTGAG
TCCAAAACTTATCATCCAAAACCAAAAAAAATTATGCAAAAATGAAGAAA
TTGCTGAAGCTTTCAATGAGTACTATGGTTCTATTGCTGACAAGACCAAA
GCTGAAATTCCACCTACGGATAAAGTCTTCAATGACTATCTTGGTGCGCC
TAACCCTGATTCTGTGTTTTTTCACCCCACATCTCCTGATGTCATCAATA
AATTAATCAATGAACTCGACGAGAAAAAGGCAAACGGTCCATCGAGTATT
CCCACGTTTTTCCTAAAACTCATTAGTCCTAGGGCATCCATCATTCTTGC
TGACATCTTCAATGAATGCCTCCAGTCTGGAACTTATCCTGACTGTTTGA
AAAAAGCCTCTATCAAACCTCTGCACAAGAAAGCCTCTAAATTAGAGATC
GGTAACTACCGACCCATTTCTCTGTTATCCAATATCAACAAAATTTTTGA
GAAACTTATTCACTTCAGACTCTCTGAATTTTTTACCCAACACGACATTA
TCTTCAAAAACCAATTTGGATTCAGAGAGCGTCACAGCACAAACCATGCA
ATAATTGCTCTCACTGAACTAGCGAGAGAAGCCCTTGATAACAAAGAATT
TGCTGCAGGAATTTTTATTGATCTTAAAAAAGCGTTTGATACTGTGGAAC
ACAGTATCCTTCTTCACAAACTTCGTCACTATGGTGTCAGAGGCAAACCT
TTTGAATTAATTTCGTCCTATCTCAGTAATAGAACTCGTGGTACTTTCAT
CCAAAACACTCTCTCAAGTCAAATTGAACAAAAACATGGTGTCCCACAAG
GATCAGTGCTTGGTCCACTTTTCTTCATTATTTACATTAACGATTTGAAC
AAAGCTATAGATCACTGCTCAACTATACACTTTTCTGATGACACTAGCCT
GGNTTTTGAATCTCATATCAGCTACTTTATCCAATCTCTTGGTCATGTCA
AGGTTGCCTCATTAGACAAGCTGGAAAAACTCCAAAATAAGGCACTCAGG
ATTATCCATTTTAAAGGCCCTCAGGATTCTGCCAAGCCTTTATATGTAAA
TAGCAGAATCTTGCCCATTAGGTACATCATGAAAGAAAAAAACTGTCTAT
TTGCATATGATTTTCACAAAAACAGAGCCCCAAAGTACTTTTCCACCTTC
CTCTCTCCCATAGGTAATAATGCTCCCCATGTCACAAGAAACAAGCAACT
GTCAATCACCAGAACAAAGACGGTAATGTATGGATCGCACAACATAGCTA
ATCTTATCACCAAAGACTGGAATGAAATCCACCCCCATCTACCTTCCCTT
GACCAAATTACCAGCAAATCCACTTTCAAGGCCCACCTTCATGCTTACCT
TCTCACTAAACTTGCCTCAAGTTAAATCCCTTCCCTGACTCCCAAGGTTT
CTTTGTAGATGTATATATTATTATTTTTATTATCATTGTTATTATCACTA
TTACCTTTTTTTCCTTTGTTTCTTATTTTGAATTATTCCCCAATTATAT

Coding sequence (CDS) from alignment at scaffold_370:22926..26124-

>TCONS_00062636 ID=TCONS_00062636|Name=TCONS_00062636|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_370:22926..26124- (Clytia hemisphaerica)
GTAATAATGCTCCCCATGTCACAAGAAACAAGCAACTGTCAATCACCAGA
ACAAAGACGGTAATGTATGGATCGCACAACATAGCTAATCTTATCACCAA
AGACTGGAATGAAATCCACCCCCATCTACCTTCCCTTGACCAAATTACCA
GCAAATCCACTTTCAAGGCCCACCTTCATGCTTACCTTCTCACTAAACTT
GCCTCAAGTTAAATGCCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCC
AGTAGCTAAGAACCACCGTGCGATCCAGTGTGACAACTGCTCCTATTGGG
TACACATTAAATGCAACAATACCACAGACAATGACTATACCAAACTCATA
TCATCAGATGAAACATGGTCATGCCTCAAATGCATCCAGACAGCAATACC
ATTTCTTCAGTCCTCTGATGAAGAACTCAAGCTACTCACCCAAGGTAATA
ATGCTCCCCATGTCACAAGAAACAAGCAACTGTCAATCACCAGAACAAAG
ACGGTAATGTATGGATCGCACAACATAGCTAATCTTATCACCAAAGACTG
GAATGAAATCCACCCCCATCTACCTTCCCTTGACCAAATTACCAGCAAAT
CCACTTTCAAGGCCCACCTTCATGCTTACCTTCTCACTAAACTTGCCTCA
AGTTAAATGCCAGTGAAATTCCCATGTGGTATTTGCAAAAAGCCAGTAGC
TAAGAACCACCGTGCGATCCAGTGTGACAACTGCTCCTATTGGGTACACA
TTAAATGCAACAATACCACAGACAATGACTATACCAAACTCATATCATCA
GATGAAACATGGTCATGCCTCAAATGCATCCAGACAGCAATACCATTTCT
TCAGTCCTCTGATGAAGAACTCAAGCTACTCACCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039252XLOC_039252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062636-proteinTCONS_00062636-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062636-exon-scaffold_370-1575043694:25746..26124TCONS_00062636-exon-scaffold_370-1575043694:25746..26124Clytia hemisphaericaexon
TCONS_00062636-exon-scaffold_370-1575043694:22926..23261TCONS_00062636-exon-scaffold_370-1575043694:22926..23261Clytia hemisphaericaexon
TCONS_00062636-exon-scaffold_370-1510915933:25746..26124TCONS_00062636-exon-scaffold_370-1510915933:25746..26124Clytia hemisphaericaexon
TCONS_00062636-exon-scaffold_370-1510915933:22926..23261TCONS_00062636-exon-scaffold_370-1510915933:22926..23261Clytia hemisphaericaexon
TCONS_00062636-exon-scaffold_370-1491911889:25746..26124TCONS_00062636-exon-scaffold_370-1491911889:25746..26124Clytia hemisphaericaexon
TCONS_00062636-exon-scaffold_370-1491911889:22926..23261TCONS_00062636-exon-scaffold_370-1491911889:22926..23261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:22926..26124 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.270288	0	0	0	0	0	0.292739	0.299531	0.327172	0	0	0	0	0	0.132987	0	0	0	0.418282	0	0	0	0.165713	0	0.432645	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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