TCONS_00062582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062582
Unique NameTCONS_00062582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062582 ID=TCONS_00062582|Name=TCONS_00062582|organism=Clytia hemisphaerica|type=transcript|length=723bp
CGCTGGAAAAGTCTCTAGAGAAagacaacaacaaaaaatggCGTCAAGAT
ATGAGCAACGTGGGTGTGATTTAATTGTTAATGACTTCTTCACATTATGT
acctttaaaaatgctttaaaaatagatttggttgtgattatgagatggtg
aaagtttgattgaaaaacttggttgaagtatcaaaacaaacttgttgtca
aagagatttaaacagtaagtgaaaatacagtcgTCCAGAGATCAACCGTC
CCAAGATATTTGACCAATCgttccaagttagagcagttgatgatATTCAT
GAGTTGGATTtatgcacaaacccctgtaactatgggcaagcaccatgttg
ctaagatgttggcttgaaaccactgaaaacgaaagtaaaattggTCCGCA
CTCCAATTCCCTCAATCTTGATATAGAAGTTTTAGTCTAATTTGCTAAAG
CTGGAAtgtgaagaaaaataaataaataaactgaaaccaAAAGTACAAAA
CTCTATGTGGATCATTACTCTACTTCTAACAACAAGGCAGCAGTCAGTGA
GCATCATTAAACATcacaaaaaaagacaaaagtttttatttcaataTGTC
AGTCTGTCTTATAGAAAACTGGTATAAATTTTTGCCATGGCTCACCTATA
CACTATGTATAACTAATTCGATAATGGAAGGAACAAGACATCattttgga
aattcaaaaaatataccatGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_369:238062..238784

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062582 ID=TCONS_00062582|Name=TCONS_00062582|organism=Clytia hemisphaerica|type=transcript|length=723bp|location=Sequence derived from alignment at scaffold_369:238062..238784 (Clytia hemisphaerica)
GTACatggtatattttttgaatttccaaaatGATGTCTTGTTCCTTCCAT
TATCGAATTAGTTATACATAGTGTATAGGTGAGCCATGGCAAAAATTTAT
ACCAGTTTTCTATAAGACAGACTGACAtattgaaataaaaacttttgtct
ttttttgtgATGTTTAATGATGCTCACTGACTGCTGCCTTGTTGTTAGAA
GTAGAGTAATGATCCACATAGAGTTTTGTACTTTtggtttcagtttattt
atttatttttcttcacaTTCCAGCTTTAGCAAATTAGACTAAAACTTCTA
TATCAAGATTGAGGGAATTGGAGTGCGGAccaattttactttcgttttca
gtggtttcaagccaacatcttagcaacatggtgcttgcccatagttacag
gggtttgtgcataAATCCAACTCATGAATatcatcaactgctctaacttg
gaacGATTGGTCAAATATCTTGGGACGGTTGATCTCTGGAcgactgtatt
ttcacttactgtttaaatctctttgacaacaagtttgttttgatacttca
accaagtttttcaatcaaactttcaccatctcataatcacaaccaaatct
atttttaaagcatttttaaaggtACATAATGTGAAGAAGTCATTAACAAT
TAAATCACACCCACGTTGCTCATATCTTGACGccattttttgttgttgtc
tTTCTCTAGAGACTTTTCCAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039211XLOC_039211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062582-exon-scaffold_369-1491911889:238062..238784TCONS_00062582-exon-scaffold_369-1491911889:238062..238784Clytia hemisphaericaexon
TCONS_00062582-exon-scaffold_369-1510915933:238062..238784TCONS_00062582-exon-scaffold_369-1510915933:238062..238784Clytia hemisphaericaexon
TCONS_00062582-exon-scaffold_369-1575043694:238062..238784TCONS_00062582-exon-scaffold_369-1575043694:238062..238784Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:238062..238784 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.345114	0.876426	1.40672	0.614831	3.16476	0.956202	1.41984	1.91077	1.86126	2.51065	2.65732	2.25247	1.28534	0.812866	1.25419	1.26182	1.45083	1.8385	0.880474	0.844573	2.06879	1.56245	1.26624	0.79145	1.55624	2.18257	1.32502	0.707047	1.45559	1.1708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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