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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062206 ID=TCONS_00062206|Name=TCONS_00062206|organism=Clytia hemisphaerica|type=transcript|length=701bp TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA GAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGCTTACGACCC CATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATTTATTCATCG ATATGCTAtctgaaaacaatgaaaaattcgTAGAATTTGGAATGGCTGGT TTGTGTAACCTCTGTGTTGAGTCAACAAATAGAGACCATATCATTAAGAA TGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGCACTAATGAAGAAA TAGTGTTGAATGCCATGACAACACTCATATATTTAGTCACACCAGCCACC AGGAAAGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAA GACCTCAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGG ATAATTGCCATGGTTGATGAAGATAACTCAGGAGGTTTAATTTTTCAGCT GATACCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTATA AAGTTTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAGA N Run BLAST on NCBI transcript from alignment at scaffold_362:729376..732322+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062206 ID=TCONS_00062206|Name=TCONS_00062206|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at scaffold_362:729376..732322+ (Clytia hemisphaerica) TTAGAATctttagaaaattgaaaataaaagaaataataaatgttttcaag
tgaaaaatatatcaaagaTCAACGTGAGAAAAGTGGTAGACGTAATCGGT
TTGATTATTTACAATCTTTGGTCACTGAATTTCAAGATACTGATAATGAA
GGTGAGAGTTGGATACAGGGGGATTTGTCTGCCTGATTTCTAATAGTTGA
ATGtaacaatgaaaatattataaagGTCTGGACGAGGTGTTAAATGTGCC
TGTTTTGTACTCGGAGATaacaacaaaaaaacgtaaattttatgtTTCTA
TATTAGTTTACGTAACCTTTTGGATACACTGAAATTAGAACTTGTGATTT
GACGAATCTTACAGCAGTTATTCGTATCATTCATGATTAGGAAACCTTTG
GCATTCATGATTAGGAAACCTTTGGCATTCAACTGTTTATTTGCAATATC
GCTTTTAACGGAGTAACTTAATTTCGAAATTTCTGTGGctgttatttttt
cttttggatGATAACCTTTAAGCTTTATGTAATGTTTGATGAAAAGTTGG
TGAtggaaaaaacaatttgaaaatttaagacACAAGGAGTTATGATTGTC
ATGTATAATCTCCTGAATTATCATAAACTTGACTCATCAAATGAAATTTT
GTTCTTTTAGAATCAAAACTGCAAATACTGGCCAACCTTGGTAACTTTGC
TTACGACCCCATCAACTTCAATCATCTGCGGGAACTGAATGTTGTTGATT
TATTCATCGGTAAATTCTAAATTGTGTGATTTATttagtttaaaaaataa
tagaaCATAATGCTGTGAAATATATTTTAGATAGAGTTTCCATCTTTTCA
TTCTGAAGTGAAAGAATTCCAGATTTCATTTTGGAACAAATTTACTATAT
ACTGTATTATACACTGTAACACAGGATTGTTTCTGCCCTCACATTtcatt
ttaacttattttaacTCAGATTTTTTCTTACAGATATGCTAtctgaaaac
aatgaaaaattcgTAGAATTTGGAATGGCTGGTTTGTGTAACCTCTGTGT
TGGTTGGTAACTTATCTTGTATTCAATCATATTTGATTTATCTTATAATT
TAGTTTATCTTATAAACTGGATTCTATCCACCTACAATTGGGTGTGTTAT
ATCTCCCTAAGCTTGCCAAAAATGTGTCTGACATGCACTTTCAGATTTAA
TAAGATGTCACGGAACTCCAGGCTCGGCCCCCTACTGTGCTATACATTTT
AACTTCGTTTTCATTCTTTGTTTCAGAGTCAACAAATAGAGACCATATCA
TTAAGAATGAAGGTGTAGATGCCATTATGCAATGCTTCTCAAGGTTAGCC
GTAATGTTTTTTgaattgttaatttttttaccaaagatTACTTTAATCAT
TTCAAAATGTCCGTAtgtaataagaatttttttttctccaaaaactCTCC
AATCTAGAATTATTGTAATCATTCAAATCTTCACTCTTTCTTATAGCACT
AATGAAGAAATAGTGTTGAATGCCATGACAACACTCATATATTTAGTCAC
ACCAGCCACCAGGAAAGGTAAAATAGCCATCACCTCCTCTACTAAATCTC
AGATGAGATGATAAGACGTGTAACTTCAGTCCAAGGTTATtcaaaggctc
ctctttcaatTGTTGTCCACCAGAAGAGAGGGGATGATCTCACTCTTTCT
CCTACAGTGTCTATTGTTGACCTTTCTCTGTAGTTTCCAAGCACAAAACT
ATTAAGTCATTAGTAAGGTCTTACTGACCCTTATAACCCCTGAACTCAAC
TAATTATATCCGCAATCCTTGTTTAGAGTTGTATTAAagttgtattcatg
atatgcaccgctgcaatgtcttctgacatcacggaaccaattcatgatat
gcaccactgcaatgacttcacgaaattatgcaatttttctgtatttgttc
cacccaatacgtctttttttctattgtttaagtgacgtatcgggttgaac
tttttgaaaattctcagaagactctccagtggtgcatatcatgaatagct
cattggttgtaagtgacgtaaaatcagtcaatacgtcacactatcaacca
atcagctattgggtggaatggaagacattgcaatggtgcatatcatgaat
actctAATGGTAGTACTTCGCAATGTACAATTAGGGTAACTCAGATCATA
GATTTTGTTTTGCTgcatattatattattttgaacCCTTAATTTGACTCA
TTGTCAccattgaaatttgatttttaatcaaatttacTTCATCTGTTTTA
AGACATCATAACAGAAGAAATTGTGGATTGCATGAAACAATTGAAGACCT
CAACAAATCCAAGATTGAAAAATCTTGCTACCATTTTCCTACAGGTATAG
CCTTTTTACCAAACCATTTATTATACAATTTGAAAGTGCCAAACCACTAA
AACGGCCTAGAGATGACTAAAAGAGCTACTTCACAGAGCTATGATTTTTT
ATGTAAGAAAATTATGGAGAATCTGAACACAGATTTGAAATCATTAAGtt
ttaaatattctaaaaaGTATGATGTCATTATTTTTGAACCAGTAGGTTCA
ATCATCTTCAATTTAGACTTTATAATGATCTTAAATCTATTAGATAATTC
TCCTCgagaatatctttttaacggtACATAACTTTCTAACATGGCGTAGA
GGAGTGCTGAGGTATTGTTAAAATTAAAGTGTCAACATATTTCAgacttt
atttttgaattcactttattttatcaaaattcctTCTGACTTCAGGATAA
TTGCCATGGTTGATGAAGATAACTCAGGAGGTTTAATTTTTCAGCTGATA
CCCGTCAAATCAACCTATCTAATCAACTCTAACTGACTACTTTATAAAGT
TTGCGGCTTATGAACAGGAGTTAAAAGGGATACCATGAGCAGAAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062206-exon-scaffold_362-1491911889:729376..729526 | TCONS_00062206-exon-scaffold_362-1491911889:729376..729526 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:729376..729526 | TCONS_00062206-exon-scaffold_362-1510915933:729376..729526 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:729376..729526 | TCONS_00062206-exon-scaffold_362-1575043694:729376..729526 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:730036..730134 | TCONS_00062206-exon-scaffold_362-1491911889:730036..730134 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:730036..730134 | TCONS_00062206-exon-scaffold_362-1510915933:730036..730134 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:730036..730134 | TCONS_00062206-exon-scaffold_362-1575043694:730036..730134 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:730359..730427 | TCONS_00062206-exon-scaffold_362-1491911889:730359..730427 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:730359..730427 | TCONS_00062206-exon-scaffold_362-1510915933:730359..730427 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:730359..730427 | TCONS_00062206-exon-scaffold_362-1575043694:730359..730427 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:730652..730718 | TCONS_00062206-exon-scaffold_362-1491911889:730652..730718 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:730652..730718 | TCONS_00062206-exon-scaffold_362-1510915933:730652..730718 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:730652..730718 | TCONS_00062206-exon-scaffold_362-1575043694:730652..730718 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:730872..730942 | TCONS_00062206-exon-scaffold_362-1491911889:730872..730942 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:730872..730942 | TCONS_00062206-exon-scaffold_362-1510915933:730872..730942 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:730872..730942 | TCONS_00062206-exon-scaffold_362-1575043694:730872..730942 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:731678..731769 | TCONS_00062206-exon-scaffold_362-1491911889:731678..731769 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:731678..731769 | TCONS_00062206-exon-scaffold_362-1510915933:731678..731769 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:731678..731769 | TCONS_00062206-exon-scaffold_362-1575043694:731678..731769 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1491911889:732171..732322 | TCONS_00062206-exon-scaffold_362-1491911889:732171..732322 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1510915933:732171..732322 | TCONS_00062206-exon-scaffold_362-1510915933:732171..732322 | Clytia hemisphaerica | exon |
TCONS_00062206-exon-scaffold_362-1575043694:732171..732322 | TCONS_00062206-exon-scaffold_362-1575043694:732171..732322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_362 | supercontig | scaffold_362:729376..732322 + |
Blast
BLAST of TCONS_00062206 vs. Swiss-Prot (Human)
Match: ARMC7 (Armadillo repeat-containing protein 7 OS=Homo sapiens GN=ARMC7 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.701e-53 Identity = 80/157 (50.96%), Postives = 109/157 (69.43%), Query Frame = 1
Query: 94 NRFDYLQSLVTEFQDTDNEESKLQILANLGNFAYDPINFNHLRELNVVDLFIDMLSENNEKFVEFGMAGLCNLCVESTNRDHIIKNEGVDAIMQCFSSTNEEIVLNAMTTLIYLVTPATR--KDIITEEIVDCMKQLKTSTNPRLKNLATIFLQDNC 558
R YLQ+LVTEFQ+T ++++K Q+LANL NFAYDP N+ +LR+L V+DLF+D LSE NE VEF + GLCNLC + N++HI+ GV I+ C SS NEE VL+A+TTL++L P ++ +V CM + S + RL+NLA IFL+D C
Sbjct: 12 GRLGYLQALVTEFQETQSQDAKEQVLANLANFAYDPSNYEYLRQLQVLDLFLDSLSEENETLVEFAIGGLCNLCPDRANKEHILHAGGVPLIINCLSSPNEETVLSAITTLMHLSPPGRSFLPELTATPVVQCMLRFSLSASARLRNLAQIFLEDFC 168
The following BLAST results are available for this feature:
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