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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062309 ID=TCONS_00062309|Name=TCONS_00062309|organism=Clytia hemisphaerica|type=transcript|length=1048bp
ATTTAAGTCCTTTCTGATCTTTAAAGGTGTTTTTTTCTTGGAGCAGTCAA
ATAATAATTATTAAAGCTGTTGGTTTTGTTACACCATTATCAATTTGATT
AATACGAAACAAAGTAGTGTAATTACAAGGGAAGGTGTAGCGATTATCGG
TCGAGCACCTTTCGATTTGACAAAGAATCGCAATGACTCCAAACTCCCAC
CACAAGAGATTGTACTACAGATAACATCGCTTTCGTATACTTCCGTCTCC
CGGCCATCATTTTCATGCATACTCCAACACTTCTCGTTACACTCGTAGCG
ATTGTTCCGTTTGTCGTAGTAGCGGAATGACACGCATGTTTCATCACCGT
AGAATTGCGCTAATACGGGATAATCATTGACGTCATAACCCAAATCAATC
GGCCCGTCTCCTTTCCttaaaagaatattttccttCCGTGGCTTACCACC
GCAAGCATTAGATCCCCTTGTCGAACGAATACAATCCCAAACTTCAATAC
GTACCCGGTCAACGTTCCCCGATTTCCCGGTTTTTGTTATCGGGCATGAT
TTGGAGAAACCGTTACCACCACCGGTGGCGCTCTTCATGGTGACGGTAAC
CTTCAAAGATTTGTATAAAGACGTAGACCCAACACTTTCGCCAATGTACG
TCTCTGAACTATAACTTAACGAAGAAGAGCTGGCCGTACATGTTTCTTTG
CATTTGTAAGAAACGCTCGGGTCCGTCCAGTAGCtactagattttctttt
ttgattccatgcaaaacaaacatttttccCAGTGAATATAGCTTTAACGT
ATTGCCCGTTTTTGTAAATGATGTTAACCGTTTGCCCTCTAGCTATCTCG
ATCTCCTTCTCCACAGCTCCGCAACCGCCGTACATAGTACTAGATGTGCA
ATCATGGACACGCGCTATTGCGCTGGTCTCGTGCCCGTCCACGTTATACC
GTGATAGTGTACATTCAGAATTAATTGAGTCGAACATCGACATGATTAAA
ATGGCAAATATGATTTGCTTCATTTTGTCACTCTTTTGTGATCTAAAA Run BLAST on NCBI protein sequence of TCONS_00062309-protein >TCONS_00062309-protein ID=TCONS_00062309-protein|Name=TCONS_00062309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
FRSQKSDKMKQIIFAILIMSMFDSINSECTLSRYNVDGHETSAIARVHDC
TSSTMYGGCGAVEKEIEIARGQTVNIIYKNGQYVKAIFTGKNVCFAWNQK
RKSSSYWTDPSVSYKCKETCTASSSSLSYSSETYIGESVGSTSLYKSLKV
TVTMKSATGGGNGFSKSCPITKTGKSGNVDRVRIEVWDCIRSTRGSNACG
GKPRKENILLRKGDGPIDLGYDVNDYPVLAQFYGDETCVSFRYYDKRNNR
YECNEKCWSMHENDGRETEVYESDVICSTISCGGSLESLRFFVKSKGARP
IIATPSLVITLLCFVLIKLIMV Run BLAST on NCBI transcript from alignment at scaffold_362:421056..422103 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062309 ID=TCONS_00062309|Name=TCONS_00062309|organism=Clytia hemisphaerica|type=transcript|length=1048bp|location=Sequence derived from alignment at scaffold_362:421056..422103 (Clytia hemisphaerica)
TTTTAGATCACAAAAGAGTGACAAAATGAAGCAAATCATATTTGCCATTT
TAATCATGTCGATGTTCGACTCAATTAATTCTGAATGTACACTATCACGG
TATAACGTGGACGGGCACGAGACCAGCGCAATAGCGCGTGTCCATGATTG
CACATCTAGTACTATGTACGGCGGTTGCGGAGCTGTGGAGAAGGAGATCG
AGATAGCTAGAGGGCAAACGGTTAACATCATTTACAAAAACGGGCAATAC
GTTAAAGCTATATTCACTGggaaaaatgtttgttttgcatggaatcaaaa
aagaaaatctagtaGCTACTGGACGGACCCGAGCGTTTCTTACAAATGCA
AAGAAACATGTACGGCCAGCTCTTCTTCGTTAAGTTATAGTTCAGAGACG
TACATTGGCGAAAGTGTTGGGTCTACGTCTTTATACAAATCTTTGAAGGT
TACCGTCACCATGAAGAGCGCCACCGGTGGTGGTAACGGTTTCTCCAAAT
CATGCCCGATAACAAAAACCGGGAAATCGGGGAACGTTGACCGGGTACGT
ATTGAAGTTTGGGATTGTATTCGTTCGACAAGGGGATCTAATGCTTGCGG
TGGTAAGCCACGGaaggaaaatattcttttaaGGAAAGGAGACGGGCCGA
TTGATTTGGGTTATGACGTCAATGATTATCCCGTATTAGCGCAATTCTAC
GGTGATGAAACATGCGTGTCATTCCGCTACTACGACAAACGGAACAATCG
CTACGAGTGTAACGAGAAGTGTTGGAGTATGCATGAAAATGATGGCCGGG
AGACGGAAGTATACGAAAGCGATGTTATCTGTAGTACAATCTCTTGTGGT
GGGAGTTTGGAGTCATTGCGATTCTTTGTCAAATCGAAAGGTGCTCGACC
GATAATCGCTACACCTTCCCTTGTAATTACACTACTTTGTTTCGTATTAA
TCAAATTGATAATGGTGTAACAAAACCAACAGCTTTAATAATTATTATTT
GACTGCTCCAAGAAAAAAACACCTTTAAAGATCAGAAAGGACTTAAAT Coding sequence (CDS) from alignment at scaffold_362:421056..422103 >TCONS_00062309 ID=TCONS_00062309|Name=TCONS_00062309|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_362:421056..422103 (Clytia hemisphaerica)
TTTAGATCACAAAAGAGTGACAAAATGAAGCAAATCATATTTGCCATTTT
AATCATGTCGATGTTCGACTCAATTAATTCTGAATGTACACTATCACGGT
ATAACGTGGACGGGCACGAGACCAGCGCAATAGCGCGTGTCCATGATTGC
ACATCTAGTACTATGTACGGCGGTTGCGGAGCTGTGGAGAAGGAGATCGA
GATAGCTAGAGGGCAAACGGTTAACATCATTTACAAAAACGGGCAATACG
TTAAAGCTATATTCACTGggaaaaatgtttgttttgcatggaatcaaaaa
agaaaatctagtaGCTACTGGACGGACCCGAGCGTTTCTTACAAATGCAA
AGAAACATGTACGGCCAGCTCTTCTTCGTTAAGTTATAGTTCAGAGACGT
ACATTGGCGAAAGTGTTGGGTCTACGTCTTTATACAAATCTTTGAAGGTT
ACCGTCACCATGAAGAGCGCCACCGGTGGTGGTAACGGTTTCTCCAAATC
ATGCCCGATAACAAAAACCGGGAAATCGGGGAACGTTGACCGGGTACGTA
TTGAAGTTTGGGATTGTATTCGTTCGACAAGGGGATCTAATGCTTGCGGT
GGTAAGCCACGGaaggaaaatattcttttaaGGAAAGGAGACGGGCCGAT
TGATTTGGGTTATGACGTCAATGATTATCCCGTATTAGCGCAATTCTACG
GTGATGAAACATGCGTGTCATTCCGCTACTACGACAAACGGAACAATCGC
TACGAGTGTAACGAGAAGTGTTGGAGTATGCATGAAAATGATGGCCGGGA
GACGGAAGTATACGAAAGCGATGTTATCTGTAGTACAATCTCTTGTGGTG
GGAGTTTGGAGTCATTGCGATTCTTTGTCAAATCGAAAGGTGCTCGACCG
ATAATCGCTACACCTTCCCTTGTAATTACACTACTTTGTTTCGTATTAAT
CAAATTGATAATGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062309-exon-scaffold_362-1491911889:421056..422103 | TCONS_00062309-exon-scaffold_362-1491911889:421056..422103 | Clytia hemisphaerica | exon |
| TCONS_00062309-exon-scaffold_362-1510915933:421056..422103 | TCONS_00062309-exon-scaffold_362-1510915933:421056..422103 | Clytia hemisphaerica | exon |
| TCONS_00062309-exon-scaffold_362-1575043694:421056..422103 | TCONS_00062309-exon-scaffold_362-1575043694:421056..422103 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:421056..422103 . |
Blast
The following BLAST results are available for this feature:
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