TCONS_00062185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062185
Unique NameTCONS_00062185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062185 ID=TCONS_00062185|Name=TCONS_00062185|organism=Clytia hemisphaerica|type=transcript|length=2249bp
ataaaacttttttttatacatttttatacATTGTAATTCTTTACAACAAA
GGAATTATGCTTTAATCAGAAATTATTAGGGCTGAAATTACATGTCTTTA
atcaaagtaaaaatctttctccTCACAGGGAAGGAAGGATATAtctgtaa
attttgttttcgtTTCGAGTGATATTTTTCGGAgccgtttaaaaaaaaat
tgttaactTTATGTCTGTCCATTAATATAGATAGCAGTCTGTGTTTTATC
ctgttctttttgacttcacTCAAATCAagtttggtcttcaaaataacaaa
ttgaaaaagaaatcatgCTTTGGCACAAGAGTAATACGTCATTTGGAGTT
GAAAGTCTCCCAACCTTCTAGAGTTAAAACCTAAGTTAAGCTGCTTCAAA
AATAGACGAGCTTAACACAACAGAAATAACTTTAACAATTTTGTACATTT
GTTTTGTAGCTTCCATTTGGTTCGGTTGGGTTAGACTCCTTGCGATTGAA
AATCATTATTAAAAAGGTGTTTTTTCGATGGCTTTGGATTTTGGTCTAGG
ATGTCTCGGAGGTTTCGCGGGAACCTTAGTTGGCCATCCATTTGATACAG
TCAAGAGACAATCAACACTCGAGACGACGCTCTGCTCCAATCCTCATTAC
TGTCTCAATTCAACTATCATCAACAGTTCGACTGCAGAGCCAAGATAAGA
ATAACATCAAATACAAAGGAACATGGAATTGTTTCTCACAAATCATCAAG
AAGGAATCTATGTTTGGCTTGTACAAAGGCATGGTATCTCCTTTATACGG
ACAAATCGGCATCAACGCTATTGTATTTGGTATCCATGGCAACGTATTAA
AAGGCCTTGGTAATCGAGACATTAAATCACAATTTTTTGCTGGTGCTGTA
GCAGGCGGAGTGCAAAGCGTTATAGCATCCCCAATGGAGCTCGTTAAAAT
TCGTTTCCAGATGCAAGGAGAAGGAGTACTTAAACACAACAAACTGACGG
CAGCCGACCATAAATATTTCTATGACTCTCCTACAGACTGTCTTAAGAAG
ATTTATAAACACGAGGGTGGTGCTAAAGGACTTTTCCGTGGCATGAGTTT
AACCTTAGTACGTTGCTTAAACTCGTTCGGAATTTATTTCGCATCTTATG
ATTTCTTATGTAAAAAGACGNGCTTAAACTCTTTCGGAATTTATTTCGCA
TCTTATGATTTCTTATGTAAAAAGACGGATGCGGTCACGGAAGAATGTGT
TAACGTCTGGAAACTCCTGCTCTGTGGAGGCACGGCTGGTAGTATTTGTT
GGCTGATTGCCTACCCGACAGATGTGATCAAGACACGGCAACAAATGGAC
GGCATGGGACGTACCAAATACAAAGGTGTCATTGACTGTACCTTGAAAAG
CATACACGAGGAAGGCTATCGTGTCTTGTTCCGTGGTCTGAACGCAACGC
TTCTGCGAGCGTTCCCAACCAACGCCGCCACTCTAGCTACGGTAACAGTG
ACGTCAAAAATGTTGGAAcagaattgttgaaattgaaagtaGAAATAACG
CGAAAGACTTGATTCACTTCTAACCAATTAGACTTCTGAAGAAACATTTA
GAGGGGACGTATGGAATATAAATTAAAAACTCTTGAAAATGTCGAAAAGA
ATTACCGATTCATAATATATAATCATTACATAATATCATTGtattattgg
tcagcctaagctgagcattcaaatccgtaaaattcatttcttccatcatc
atcatcataagacggcaaaaaaaaaatccgatttcccgatctccctttga
tttttaaactttcttccgataaggttaactttttgggtacttttagcgtg
cgttgtttttacagatcataatgtggtgtttcaagatggcggctcaagcg
ataagtcagatgtgataagtcagtgttgttccgatcgggttaactttttg
ggtacttttagcgtgcgttgtttttacagatcatcaTGTGGTggatgtgg
tgtttcaagatggcggctcaagcgatacctaagtcagatgtgataagtca
gtgttgttccgatcgggttaactttttgggtacttttagcgtgcgttgtt
tttacagatcatcaTGTGGTggatgtggtgtttcaagatggcggctcaag
cgatacctaagtcagatgtgataagtcagtgttgttccgatcgggttaac
tttttgggtacttttagcgtgcgttgtttttacagatcataatgtggtg
Run BLAST on NCBI

transcript from alignment at scaffold_362:401442..406423+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062185 ID=TCONS_00062185|Name=TCONS_00062185|organism=Clytia hemisphaerica|type=transcript|length=4982bp|location=Sequence derived from alignment at scaffold_362:401442..406423+ (Clytia hemisphaerica)
ataaaacttttttttatacatttttatacATTGTAATTCTTTACAACAAA
GGAATTATGCTTTAATCAGAAATTATTAGGGCTGAAATTACATGTCTTTA
atcaaagtaaaaatctttctccTCACAGGGAAGGAAGGATATAtctgtaa
attttgttttcgtTTCGAGTGATATTTTTCGGAgccgtttaaaaaaaaat
tgttaactTTATGTCTGTCCATTAATATAGATAGCAGTCTGTGTTTTATC
ctgttctttttgacttcacTCAAATCAagtttggtcttcaaaataacaaa
ttgaaaaagaaatcatgCTTTGGCACAAGAGTAATACGTCATTTGGAGTT
GAAAGTCTCCCAACCTTCTAGAGTTAAAACCTAAGTTAAGCTGCTTCAAA
AATAGACGAGCTTAACACAACAGAAATAACTTTAACAATTTTGTACATTT
GTTTTGTAGCTTCCATTTGGTTCGGTTGGGTTAGACTCCTTGCGATTGAA
AATCATTATTAAAAAGGTGTTTTTTCGATGGCTTTGGATTTTGGTCTAGG
ATGTCTCGGAGGTAAGCTATTTGGCTGCTTGTTCATCACGTGAAAACGTT
TTCCAGTAGGCACAAAATGATGTTAAAGCAACATCCGTCTAAAGGTCTTT
CTCATGCAGGCTGGACCGTCGGGGCACATAGTCAAAATTGGGCAAAGGGA
CTTGCCAATGGCCAGGGTTCCTTTTATTAAGCTTTTTTTTTCAGGATGAA
agttggaaaatattttcaattttcgtctacttttagtcatttcttgCTAT
TTTTCAGGGTGAAACTAAATTGTGTAGCGACTGGTTAGAAATTTTAGAGT
AGACGAAACTTTTTGGCGCTATTAAAGAACCTCTCAGTCTTTAggtaata
gcgagtttatgtattcgagataaatagaggggggacggtataaagcagag
ttgacatgtctccaaaatcaccatCCActtttgctcgacgacggtaaaaa
caccaaaataccgtcgtctgtttaggtgagcaaaggcgatatagagccgt
acatcaagtatcgactttgttttgtatcgatttcagttaccgtcgccctc
gatatcctccgatacataaactcggtaattaAAAGAAGACTGGAGACAAC
TTATTTCTTCATCATTATTTATCATTGTAGGTTTCGCGGGAACCTTAGTT
GGCCATCCATTTGATACAGTCAAGGTATTTATGTCCATTAATTACTTAAT
TACcgatttttatgatattttacaATTcactttgtgttttttttttcact
cttcATATTTAATTTATTTACCATAGCCAGTTATAACGAAAAACAAGATC
AAAAGTATGAAACAAAGGAAGGTATAGAATCTTTCCAATATTCtcgatat
gcgtaagtcaagattaaaTCATTcttcctatcggaaacacccgaaaagac
cggaatttgacccctgtgttACTAATAACGCTCAAATTTCGGTGTTTTTG
GGTGCTGCTGATAGGAAAAATGATGTAATCTGGGCTAACGCATACCAAGA
GTTGTCAACCTATCAGCAAGATGGAGTGAAAAGAATAAGCCCGGACTTGc
tgaaggttttatttttacataagtgttcccgtttcatatcagacacatat
ttcatatcaggacagggtctgcctattgttatattatgctgatataaaca
aaaattgttttctttccctctttctgatcatctccacatccgtgtcaatc
caatgtgaaaaagcttgtaaattagaattgacgagtaagcaaacgatatc
actcttattcaaaaacaaaacctttaagtaaaatattttagcaatatatt
ttattgGATTCGACTCAGCCTCGACAGctcttttttgaaaactttagact
taaatgttactttattcaAATAACAGTATGAAGACTCGTGTTGCtgtaaa
attgttaaaattagATAGCAAAGAGCGATAGTTAGATTGAGTTGTGGTAA
GTTTTGAATAGTGGATCTCATTCAACCTGTATGTATCCTTTTTCTAACGA
TGACTTTCCCTTACAGAGACAATCAACACTCGAGACGACGCTCTGCTCCA
ATCCTCATTACTGTCTCAATTCAACTATCATCAACAGTTAGTTTCAAAAC
AAGCACTCATATAGTGTGCCTCCATCTAATAAAACCCTTCCATTTCAGCT
AATACCCCTTACaatatttcaaacaaatttatttgagaagtatttccaat
tttttcaaaactgatcTTAAAAACATAATTGCTAGATATTTTTGACCGTC
TAAGCAAACTTGAGTCTACAgaaagatttttgtcaaataaatCAAGCaac
acaaaaacattttcttaaaaaaataaatccacTGTCAATAACATTTAGTG
CCTTCGCCCTTATGcgttaatttcaaaaaaataagaaaggtGCCGCATCC
AATTCgcctactttcactttcgttttttaaCTTCAGGTTCGACTGCAGAG
CCAAGATAAGAATAACATCAAATACAAAGGAACATGGAATTGTTTCTCAC
AAATCATCAAGAAGGAATCTGTAAGTATCTCATCATTTGATACAAACGAA
AAGATTCCTCAAAGCCAGtattaattttaatttgattCAATAGTCTTATT
TTTGAccagaaaaagaattttggCAGCGCCCAAGAAACTGGCCAAGACTT
TTTATTTACTGTTACTGTATATATCTGCTACagtcagtctgtgccactac
ctcgatcgggaagattcttccgaaatgggaagaaccttcccgaacAGGAA
GAacttactttatttttttctgcccGTTTTGGAAGgattcttcctctttg
ggaagttgaaaattgactgaatctcggcgaagctgtacgatgaccggcga
aagttgaaactttttggaggtgaagaagcatcaaattttaaggtttttca
ccgaaagaaaagtagactttaccgtagaaatcttgttaaattgtAAAAAA
ACTGCGTAAACTTCCCAAACGAGAATTTCCAACCCGATCGAGTTTTCCTT
AGTTTCTCGCTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGGGTGTT
ACgttaatttcccgttcgggaggattcttcccatttcggaagaatcttcc
aattttggaagaatcttcccgatcgagttagagGCACAGACTGACAGTAT
TTACATAATAAGACCTTGTGTCTACTATCACtttcttttctaaaaatcaG
ATACTTTCATTGATGAGCAGATCTGATTAATACCTTATTACTCGAATAGT
actgaattgaaaaatttcgtgttaattaaaaccccttgaattaaaaccag
ccgtggtgtccttgaaaaagcaataaaattcaTGTTAATTTTAAGGCCGT
TAAATACTTCCATACttatattcgtgtaataaggtatccCAGTTGACAAA
AACGTCATATGGGTCGGATATACTTCTTTTCATTTATTGCAGATGTTTGG
CTTGTACAAAGGCATGGTATCTCCTTTATACGGACAAATCGGCATCAACG
CTATTGTATTTGGTATCCATGGCAACGTATTAAAAGGCCTTGGTAATCGA
GACATTAAATCACAATTTTTTGCTGGTGCTGTAGCAGGCGGAGTGCAAAG
CGTTATAGCATCCCCAATGGAGCTCGTTAAAATTCGTTTCCAGATGCAAG
GAGAAGGAGTACTTAAACACAACAAACTGACGGCAGCCGACCATAAATAT
TTCTATGACTCTCCTACAGACTGTCTTAAGAAGATTTATAAACACGAGGG
TGGTGCTAAAGGACTTTTCCGTGGCATGAGTTTAACCTTAGTACGTTGCT
TAAACTCGTTCGGAATTTATTTCGCATCTTATGATTTCTTATGTAAAAAG
ACGNGCTTAAACTCTTTCGGAATTTATTTCGCATCTTATGATTTCTTATG
TAAAAAGACGGATGCGGTCACGGAAGAATGTGTTAACGTCTGGAAACTCC
TGCTCTGTGGAGGCACGGCTGGTAGTATTTGTTGGCTGATTGCCTACCCG
ACAGATGTGATCAAGACACGGCAACAAATGGACGGCATGGGACGTACCAA
ATACAAAGGTGTCATTGACTGTACCTTGAAAAGCATACACGAGGAAGGCT
ATCGTGTCTTGTTCCGTGGTCTGAACGCAACGCTTCTGCGAGCGTTCCCA
ACCAACGCCGCCACTCTAGCTACGGTAACAGTGACGTCAAAAATGTTGGA
AcagaattgttgaaattgaaagtaGAAATAACGCGAAAGACTTGATTCAC
TTCTAACCAATTAGACTTCTGAAGAAACATTTAGAGGGGACGTATGGAAT
ATAAATTAAAAACTCTTGAAAATGTCGAAAAGAATTACCGATTCATAATA
TATAATCATTACATAATATCATTGtattattggtcagcctaagctgagca
ttcaaatccgtaaaattcatttcttccatcatcatcatcataagacggca
aaaaaaaaatccgatttcccgatctccctttgatttttaaactttcttcc
gataaggttaactttttgggtacttttagcgtgcgttgtttttacagatc
ataatgtggtgtttcaagatggcggctcaagcgataagtcagatgtgata
agtcagtgttgttccgatcgggttaactttttgggtacttttagcgtgcg
ttgtttttacagatcatcaTGTGGTggatgtggtgtttcaagatggcggc
tcaagcgatacctaagtcagatgtgataagtcagtgttgttccgatcggg
ttaactttttgggtacttttagcgtgcgttgtttttacagatcatcaTGT
GGTggatgtggtgtttcaagatggcggctcaagcgatacctaagtcagat
gtgataagtcagtgttgttccgatcgggttaactttttgggtacttttag
cgtgcgttgtttttacagatcataatgtggtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038989XLOC_038989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062185-exon-scaffold_362-1491911889:401442..402002TCONS_00062185-exon-scaffold_362-1491911889:401442..402002Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1510915933:401442..402002TCONS_00062185-exon-scaffold_362-1510915933:401442..402002Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1575043694:401442..402002TCONS_00062185-exon-scaffold_362-1575043694:401442..402002Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1491911889:402622..402665TCONS_00062185-exon-scaffold_362-1491911889:402622..402665Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1510915933:402622..402665TCONS_00062185-exon-scaffold_362-1510915933:402622..402665Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1575043694:402622..402665TCONS_00062185-exon-scaffold_362-1575043694:402622..402665Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1491911889:403508..403577TCONS_00062185-exon-scaffold_362-1491911889:403508..403577Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1510915933:403508..403577TCONS_00062185-exon-scaffold_362-1510915933:403508..403577Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1575043694:403508..403577TCONS_00062185-exon-scaffold_362-1575043694:403508..403577Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1491911889:403928..404011TCONS_00062185-exon-scaffold_362-1491911889:403928..404011Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1510915933:403928..404011TCONS_00062185-exon-scaffold_362-1510915933:403928..404011Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1575043694:403928..404011TCONS_00062185-exon-scaffold_362-1575043694:403928..404011Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1491911889:404934..406423TCONS_00062185-exon-scaffold_362-1491911889:404934..406423Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1510915933:404934..406423TCONS_00062185-exon-scaffold_362-1510915933:404934..406423Clytia hemisphaericaexon
TCONS_00062185-exon-scaffold_362-1575043694:404934..406423TCONS_00062185-exon-scaffold_362-1575043694:404934..406423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:401442..406423 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298171	0	0	0	0	0	0.903558	0.880408	1.57478	1.09862	7.4412	4.89462	3.9296	1.7012	0	0.319443	6.77891	7.21012	0.726255	0	42.5102	40.235	13.3403	16.4636	63.5284	58.8129	34.9411	25.1463	14.0083	10.8779
Blast
[Close]
BLAST of TCONS_00062185 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.670e-64
Identity = 120/265 (45.28%), Postives = 155/265 (58.49%), Query Frame = 1 
Query:  676 VRLQSQDKNNIKYKGTWNCFSQIIKKESMFGLYKGMVSPLYGQIGINAIVFGIHGNVLKGLGNRDIKSQFFAGAVAGGVQSVIASPMELVKIRFQMQGEGVLKHNKLTAADHKYFYDSPTDCLKKIYKHEGGAKGLFRGMSLTLVRCLNSFGIYFASYDFLCKKTXLNSFGIYFASYDFLCKKTDAVTEECVNVWKLLLCGGTAGSICWLIAYPTDVIKTRQQMDGM-GRTKYKGVIDCTLKSIHEEGYRVLFRGLNATLLRAFP 1467
            VRLQ Q     +Y+GT +CF  IIK+ES+ GLYKG+ SPL G   INA+VFG+ GN L+ LG+    +QF AGA AG +Q VI  PMEL K R Q+Q  G  +            Y    DCL +IY HE G +G+ RGM  TL+R   SFG+YF +YD L +                 C+  D +      V KLLL GGT+G + WL  YP DV+K+R Q DG+ G  +Y+G++DC  +S   EG+RV  RGL +TLLRAFP
Sbjct:   27 VRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPART-----------YKGSLDCLAQIYGHE-GLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALG--------------CEPGDRLL-----VPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFP 260
The following BLAST results are available for this feature:
BLAST of TCONS_00062185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL4.670e-6445.28Mitochondrial basic amino acids transporter OS=Hom... [more]
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