TCONS_00062245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062245
Unique NameTCONS_00062245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062245 ID=TCONS_00062245|Name=TCONS_00062245|organism=Clytia hemisphaerica|type=transcript|length=319bp
AAGAATTCAAAAAAGACTTTATACCTATCGTAAAGATCGTGGTAGTGACA
AATGCCCaccatttgaaaacattttttggaccAAGCTTACAATTCTTTTG
TGAAACATTTTCCGTTGAATTACATTTGGCTTGAACGCAAAACTTTGTAA
CGTTACCAAACAAATTAACAATCTCAGTGTTATTTGACTGTGTTTCGTTA
ATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGATTGTAACTTGT
TGGAGGTTGTGGAACATGAAAATAACATTCTTccacaaaaaagaaaattg
tcgTCGATGTGAAAATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_362:338183..342461-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062245 ID=TCONS_00062245|Name=TCONS_00062245|organism=Clytia hemisphaerica|type=transcript|length=4279bp|location=Sequence derived from alignment at scaffold_362:338183..342461- (Clytia hemisphaerica)
AAGAATTCAAAAAAGACTTTATACCTATCGTAAAGATCGTGGTAGTGACA
AATGCCCACCATTTGAAAACATTTTTTGGACCAAGCTTACAATTCTTTTG
TGAAACATTTTCCGTTGAATTACATTTGACTTGAACGCAAAACTTTGTAA
CGTTACCAAACAAATTAACGATTTCAGTGTTATTTGACTGTGTTTCGTTA
ATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGAGTGTAACTTGT
TGGAGGTTGTAGAACATGAAAATAACATTCTTCCACAAAAAAGAAAATTG
TCGTCGATGTGAAAATCAGGATCGCTAAAAAGCCAACTTGTCTCAGAAAC
CGTTTGACATTATGGAAGATCTCCTTTTTGAAATCACATTTTGCTTCAGT
GACATTTTCAATGATCATCTTCCGAAATTTATTTTCAAACTTTTCTACAA
ATGATTCTATGCCATACACTTAAAGAAATCAGTTTAAAAGTTTACAGGTT
TTGTGGTCTCTGAATAGAAAATGTTGTTATTTGATGTTCGATCCATAAAT
TCCATCAAAGTTAATACCGCTATCAATACTCATTCATTCCCGATGAATCG
AATAAATCATGATCGGGACAAAAATGATCAAAAGTTAGATTCAGTTGTTT
TCCTTTGAAATAGGATATAGGATTATTGATAAAAAGAAAAACGTTTTTTG
TTAAACGTTGATATCTACAGAAAGAATTGGGCTTTTCCAGAAAAAAACCG
TATACCCCCTGTTGAGGAGGTCAATTTCCGTTCCAATGGGGTAAGGTTTG
ATATGTGGCGGAATTCCATAGGGAGATATAAAAATCTGTCAAAAATAACT
GGAATTCTATGGGGGTAGGATTTTAAATCCTACTAAAATTCAGAATTCCA
GAGGGTTACATCATTTCCAGCCACATAGGGATGGACCTCCTCAACATAGG
GGGTATACGGTTTTTTTCTGGAAAAGCCCATTTCACAACCTAAAATTATT
TTTCAAACCCAGCAGTAACTTAAAAAAAGAAAGGACAAGAAAAAATAAAT
CATTCTTCTCAGATCAGATTCACTCAATAATTATCTGGAAAAAAACTTTT
TCTCAGACTTCACATACTGAAGAAAGAATCCAAAATATCTGAACTAACTT
TTTATACGTCGCACCATGGCTCAAAAATAATTAAATTGAAAATCAGGCTA
TTTTTCTTACAAATGATATTGTGTAAAGAAAATATATAAATAACCTTTAA
ACTAATTATTGATGAGATATTTAAACCTAATTTCCAGGAATTTTCAATTA
GTTATCATTTTATGGTCTAAGAATTTCAAATTAGTTTTAAACCTCCTCAG
TAAAAAAAAAAAAAAGGGAAAAAATCCCATCCTAAGTTTTAAAAATATCC
TTTAACGTTCAATTAAAGGGAGGGTCCAAAATAAAAAGGGGGCTGGAATT
CTTTGAGGTCTGTTTGATAAATAGTTTTGAAATTCTAAAATCTGTGAAAT
CAATTAAAGAGAGAAGAATGTCAAAAAAATTCCCACAAAGCTACTAAATA
CCCATACCTTTTGCAAAAACTTTCCGGTTTTATAGAAAATAATGAGACAA
CTTTGAGATCTTGAACACACAGCTTTCTCACAGACTCACTGGAAGCCCTT
CCCACTGGAAAAATTGACCAAAATATTGTCCCCAATGGAAAATTATACAC
TAATTTTTGTCCCCACTGAAAATAATCAAATAAACCAATCCTCACTGCAA
AATATTATGCTATTTTCACATTCCCACTGAATTTTCTGACAAAAGACTTT
TATATCCCCGGTCATAAAAAAATGGGAATCTCAATCCCCATTGAGTTTCA
GTCCGTTATTGTGAAAATAACGGCTGAAAAAATCCTACCGGGTCTGTGAG
AAGGGGGTGTTTGAACAGGTTAAATCTAAAAAAAGCGAAACAATGGTGCT
CACAGTAACATAAAGGCTAATCAAAGAATGGTCACCTCTGACTTTGAGGA
CAACAGGAAATACAAATAAGATGAAATAGGTATATCATAATTGTTGGATT
AAGATTAAAAGGATTAAAAGATGTGGTTAAAATCTGAAAAATAAGAAAAT
AATCATCTAAATTTGATTTCTGTTACGCTTCGTTTCTCCTTCAAAGAAGG
ATTAACGTAATCCAGCACCAATTCCACGATACGAAAAGACATGTACAGGA
CCCACGCCACCGGAGGGGGGGGCACAGGGCCATGGCCCCCACTTTTTTGC
AAAGTAAAAGATTTTGGTTGCGCCTCTTTAGACTCTATATTCATTGCCCC
CCACTTTCAAATTCATAGCGTGGGACCTGATGTACAAAAAAAGTGTTGCG
TCGCTCATCTCAATTAACAACTATATAATCACAGGTAATGTTTTGGAGTA
ATAATCAAACTCAGTCTGATATATTTCGACAGCACCTACGTCTTTGCGAT
TAAGAATTTTCAATGCCACCTAGGGTACCACCTATGACATAGCAATTACC
TTTCAAACATACCAATCTTTTTGCTTGTTTATTAAACGTTTGTACAACAA
AAAGGCGGTTTTCGTCTAACAGGCTTTTCTATTAAGCCGATAAAAGGCGA
TAAGAGGCTGCTAAAAATGATTGATATAGTGAAAATGAGGTTAAATATTA
GTTGTGGGCATATCAGATTTCGGCTAGTTGATGTTGATGTCATTCGAGCA
TGACAGACTTGAACCCAAAATCCTTTTTCATAAAGCTTTCAACAAAAGTC
AATAAAGTGTTGATGAGCAAATACAGTTAACCAACCAGTCAGATTTTTAT
GTTTGAATCAAATCAAACAAAAAGGTTAGTTCATTCTGAATCTATATCCA
TCTTACTGGTAAATTTATTTTCATCTCAAGGTCAAGAGATTATGGAGTTA
TCAATTTGTTCCACATAACTGTCATTTCCATCAATGTCCTTTTTGTTTTC
CTTCGTCCCCAAATCAGTTTCTAAAGATCGTATAAAATCAATAATTGATC
CCAACAATGAGAAAGTCCAATAGAAAAATGCTACGTCCAGTGAANATCGT
ATAAAATCAATAATTGATCCCAACAATGAGAAAGTCCAATAGAAAAATGC
AACGTCCAGTGAAGTAAAAATAACTAGTTGTACCATTGAGAGTTGGTATA
AATAAGTGGTGTCTGGATAAACATCGCCGAAGCCTATAGTCAACATCGTG
ACACAAACGTAATAGATTATCTCAAAGAAGCTGCTTTCCTGCAAAGTTGT
CATTTTGTAGAAAACAGAATGAAGCAATATAGTTGATATTGTCAAATAAA
TTTGAACAGCTGCCACCTTGCGTTTAAGCCATACAATTTTTTGGCGTTTC
AAGCAAGCGTTTTCAAAGCATACGATTAAATATTTGATTGTGTTGTTGAT
AGCTTTACCACAAAACAAAACATTGGCAGAAGCCATCGGAATACCGATAA
TTGCCATCACTATTGTTAAAGCTCTGCCAAGCGTAGATTTTGCCACGGTT
CTGCCATAACCTAGAATAGGAAAATTAATGCAATGGATTAGATTATATTT
TCAAAGATACCATAAAACAATAAACAGCGAATTTAAGGTTCAATCTAAGG
TGCATACGAAATAGCACTCCTTCGTTTCAGAGATGATGGGAGCCCCACCC
TACTTAAACTTTTGACCAAAATTTCGTCCCTGGTGGAAAAATACCCTACA
ATAATTTCAATCTCAATGAGATACTGACTATCTTTTCATCCTCATTGAAA
TTCGATGGACATAAGTGTTCCCGTTTCATATCAGACACATATTTCATATC
AGGGCAGTGTCTGCCAATTGTTATATTGTGCTCGATATAAGCAAAAATGG
CCAATCTTGCTCCACATACACGTCAATCCAACGTGAAAAAGTTTGTGAAT
TAAAATTGCATAGTAAGCAAACGATATCACTCTTATTTAAAAACAAAACC
TTTGAAGATGATAAAGTTATCTAGAACAACTTACCTATCGTAAAAATTGT
TGTCACGACAAATCCCCACCATTTGAAAACATTTTTTGGACCAAGCTTGC
AATTTCTTTGTGAAACATGTTCCTCTAAATTACATTTGGCTTGAACGCAA
AACTTTGTAACGTTACCAAACAAATTAACAATCTCAGTGTTATTTGACTG
TGTTTCGTTAATTATTTTAGTATTTTGGCAAAGCTGGTTGCACATTTGAT
TGTAACTTGTTGGAGGTTGTGGAACATGAAAATAACATTCTTCCACAAAA
AAGAAAATTGTCGTCGATGTGAAAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039013XLOC_039013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062245-exon-scaffold_362-1575043694:342339..342461TCONS_00062245-exon-scaffold_362-1575043694:342339..342461Clytia hemisphaericaexon
TCONS_00062245-exon-scaffold_362-1575043694:338183..338378TCONS_00062245-exon-scaffold_362-1575043694:338183..338378Clytia hemisphaericaexon
TCONS_00062245-exon-scaffold_362-1510915933:342339..342461TCONS_00062245-exon-scaffold_362-1510915933:342339..342461Clytia hemisphaericaexon
TCONS_00062245-exon-scaffold_362-1510915933:338183..338378TCONS_00062245-exon-scaffold_362-1510915933:338183..338378Clytia hemisphaericaexon
TCONS_00062245-exon-scaffold_362-1491911889:342339..342461TCONS_00062245-exon-scaffold_362-1491911889:342339..342461Clytia hemisphaericaexon
TCONS_00062245-exon-scaffold_362-1491911889:338183..338378TCONS_00062245-exon-scaffold_362-1491911889:338183..338378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:338183..342461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.17604	1.49487	1.05841	0.388143	1.34705	0	0	0.349742	0.685946	0.454467	0.10052	0.31868	0	0	5.05632	6.81912	0.311792	0	0	0	0	0	2.23266	5.33855	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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