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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp
ACATCACACAGTTCTGAGTACCTTTATTGGAATTCTCAATCGTGGTAGCT
CGAAGGGAAACCAAAACAAAGTAAAATGGCGCTCCCTACGATCAAGCCAA
GTTGGATCAAAACTTACAAATCCAGAGCAGATTTCTCAACCAAAAGGATC
GAAAAAGAAAACCAAGTTCGTTCAACATGGAGTAATCACAATGCTTACTT
TAACAAGGCTAATAATATCGTAAGTAAGAATGACGATTGGACTTCTCAAC
Gatcgaaaaataaaagtttaaatgctgttgaaaaacttttcaatgaaatt
gaaaGCAAGGAAAGCTCTCTAAACAATTTGGAATATAGACGAGACAAGCT
CAGGAGCTTAATCTATTCAGAAGATGAAAAATATAGGAAGGAGATTCAAA
GTCTGAGGGGTAATAGGTATTCAAGTACTGAAGCCATGCAAGAAAAGTTA
GATGCTTTAGCAGCTGCCAAAGAAACTAAACGCAAAAAGGAGGCAGATGA
AAAACTTTATGAACACTGGAGGCAAAATGAACCAAGACTTAGGGAATTAG
AatcaaaaagaattgaaaagaatGCTTTAGGACAGTgggaaaatcaaatt
caaaaaaaggaggaagtgatcaaaacaaattttgaaacaCAAAGAAAGCT
TGATAACTACTTAAAAGAAGAGAATTTAAGGGCACAAGCTGAGGAAATCA
AGAAAGAAGAggcaagaaaaatgaaagcaagAATGTTGGCAGAGGAGCAG
CAACAACAAATAACTGAATTGAAAAGAAAGGAAAGTGAAGCTGATTTTCT
TCGAGGAGAAGAGcaaaaacttattgaaaatgAACAGTTATTGGAAAAAA
CTGAAGCAAAGCGCAAACTTTTCGATGAACAAAGGAAAAGACAAGACTAT
GGGATGGTTTTGATTAGGCAATACAAGCAACAACTAAAGCGAAAAAGCAA
GCAGGTTCAAGAAGCTCTTGAACATGACTTGCAACTTCTCAAAGAAATCA
ATCAAATAGAGAAACAGGAAATTCAATTAAAACAAGATCAAAAAGAGGAG
AGGCGTAAAGATGCAGAGTTTATGCAAAGAGTAATTGAAGATCAATTAAG
GGTTGAGAAAATTAGAGAAGCTGAGGTTGACCAACTATATCAACAGGAAG
CAAATCGTCAATGGAGGAAACGTGAGTCAGAATGGGAAATGGAAAGGTTA
GCTCGAGATCGTCTAATCAATGCAGTATTTCAAGAGCGACAACAACAAAT
TCAGCATAAAATGGAACAAATCCAGCAACGAAAACAAGAATCTATCATGG
AAAGAGAACAACTTTTGGAAGAGCTTGAAGATCATCAAAGGCTCACTCAT
AGAGAAAATGAGGCTGCTCTGAGTCAAAGAAAAATACGAGAACAAGAACT
CCATGAGCAAATTACAGCTAGAGAAAGTGAACGACAAATGCAGCAAAGGA
GAGAAATGGAAGATTATGACCTGGAAAAATTACAAGAAATGAGAATGAAT
GAAATGTACTCTGAAGAGGCTAAACGAATTGATTTAAACTCTTCAAACAA
ATGTTTTAGAAGAAAAAGAGTTGCCTTCACATAGggaaatcttataatgg
tttcCTTATATTCTGTCACTTGATATCTTAATATATTTCTTTAATCATAT
TGGGTATAAATGTAATTTTTAGTAAAAGTGAgtcaaaaatggtttcattt
taaaagttatcaagattttcaataaaaagtccCAATTAATGATGGGAGAA
AGCGTCATTGTTTTTCATACTCTCTGTACGTAATCACCATGACTTCCAGT
ATATACAGTATGATAAATCTTTTTAAAGGAATTTGATTGACCTTTAATTT
ATAGCATTTAAATTTACATGTTTGCAAAGGAAATGGCTATTGATTGCaaa
tatgtaaattttaaaTACTTTAAATTAAAGGTGTGTTAGTTACAGGCTAC
TACTTGAGTGTTTGTAGTTCTGGTGTCCTTTGATtgaatatttaaaatat
ttttaatcacTATAGATTAAAACCAACCCAACCCAAGACTGGCAACTTGC
AACTTCTCAACTCAAAAAATGCCATGCATCTTTTCTATACCTACCAGGAT
AgttgttttttaataaatcatggaaaattttttaaatgtttgatGAAAAT
TGCTTCAAATTTACATAGTTCTAACAAGGCAACTCAGGCAATATTTAAAG
GGCATGGAAAATGGCCTGCAACTAGAACTGGTTTAACCTTTTGAGAGCTC
TGTTTGTTCAATTTTATAAGTGCTTTACTGTAAAAGATctttatttcaat
gaatttttaaCCCAAATTTTTCAGTGTATATATTTGTGTAGAATGAGGAC
TCACTTATTGCTTTAATCAGGTGTAAACTTTTTAAGCTGTTATTTATTTT
GTCAACTTTACTTAAATTGATTATGATATATACTATATTGGAGATGtgta
ctttgaaaaaaaattatgttataGATCGAT Run BLAST on NCBI protein sequence of TCONS_00062134-protein >TCONS_00062134-protein ID=TCONS_00062134-protein|Name=TCONS_00062134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp
MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVS
KNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSED
EKYRKEIQSLRGNRYSSTEAMQEKLDALAAAKETKRKKEADEKLYEHWRQ
NEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEEN
LRAQAEEIKKEEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLI
ENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEH
DLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAE
VDQLYQQEANRQWRKRESEWEMERLARDRLINAVFQERQQQIQHKMEQIQ
QRKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQITARE
SERQMQQRREMEDYDLEKLQEMRMNEMYSEEAKRIDLNSSNKCFRRKRVA
FT Run BLAST on NCBI transcript from alignment at scaffold_361:1500280..1502759 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica)
ATCGATCtataacataattttttttcaaagtacaCATCTCCAATATAGTA
TATATCATAATCAATTTAAGTAAAGTTGACAAAATAAATAACAGCTTAAA
AAGTTTACACCTGATTAAAGCAATAAGTGAGTCCTCATTCTACACAAATA
TATACACTGAAAAATTTGGGttaaaaattcattgaaataaagATCTTTTA
CAGTAAAGCACTTATAAAATTGAACAAACAGAGCTCTCAAAAGGTTAAAC
CAGTTCTAGTTGCAGGCCATTTTCCATGCCCTTTAAATATTGCCTGAGTT
GCCTTGTTAGAACTATGTAAATTTGAAGCAATTTTCatcaaacatttaaa
aaattttccatgatttattaaaaaacaacTATCCTGGTAGGTATAGAAAA
GATGCATGGCATTTTTTGAGTTGAGAAGTTGCAAGTTGCCAGTCTTGGGT
TGGGTTGGTTTTAATCTATAgtgattaaaaatattttaaatattcaATCA
AAGGACACCAGAACTACAAACACTCAAGTAGTAGCCTGTAACTAACACAC
CTTTAATTTAAAGTAtttaaaatttacatatttGCAATCAATAGCCATTT
CCTTTGCAAACATGTAAATTTAAATGCTATAAATTAAAGGTCAATCAAAT
TCCTTTAAAAAGATTTATCATACTGTATATACTGGAAGTCATGGTGATTA
CGTACAGAGAGTATGAAAAACAATGACGCTTTCTCCCATCATTAATTGgg
actttttattgaaaatcttgataacttttaaaatgaaaccatttttgacT
CACTTTTACTAAAAATTACATTTATACCCAATATGATTAAAGAAATATAT
TAAGATATCAAGTGACAGAATATAAGgaaaccattataagatttccCTAT
GTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTAAATC
AATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCTTGTA
ATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTGTCGT
TCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTATTTT
TCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGATGAT
CTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTGTTTT
CGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCTCTTG
AAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCCCATT
CTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAGTTGG
TCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAATTAC
TCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCTTGTT
TTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAGTTGC
AAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTAGTTG
TTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTCCTTT
GTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTGTTca
ttttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCACTTTC
CTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAACATTc
ttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTGTGCC
CTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgtttcaaa
atttgttttgatcacttcctcctttttttgaatttgattttcccACTGTC
CTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCTTGGT
TCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTTTGCG
TTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATGGCTT
CAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCTATAT
TTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTATATTC
CAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagttttt
caacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATCGTCA
TTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGATTACT
CCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAGAAAT
CTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGGGAGC
GCCATTTTACTTTGTTTTGGTTTCCCTTCGAGCTACCACGATTGAGAATT
CCAATAAAGGTACTCAGAACTGTGTGATGT Coding sequence (CDS) from alignment at scaffold_361:1500280..1502759 >TCONS_00062134 ID=TCONS_00062134|Name=TCONS_00062134|organism=Clytia hemisphaerica|type=CDS|length=1509bp|location=Sequence derived from alignment at scaffold_361:1500280..1502759 (Clytia hemisphaerica)
CTATGTGAAGGCAACTCTTTTTCTTCTAAAACATTTGTTTGAAGAGTTTA
AATCAATTCGTTTAGCCTCTTCAGAGTACATTTCATTCATTCTCATTTCT
TGTAATTTTTCCAGGTCATAATCTTCCATTTCTCTCCTTTGCTGCATTTG
TCGTTCACTTTCTCTAGCTGTAATTTGCTCATGGAGTTCTTGTTCTCGTA
TTTTTCTTTGACTCAGAGCAGCCTCATTTTCTCTATGAGTGAGCCTTTGA
TGATCTTCAAGCTCTTCCAAAAGTTGTTCTCTTTCCATGATAGATTCTTG
TTTTCGTTGCTGGATTTGTTCCATTTTATGCTGAATTTGTTGTTGTCGCT
CTTGAAATACTGCATTGATTAGACGATCTCGAGCTAACCTTTCCATTTCC
CATTCTGACTCACGTTTCCTCCATTGACGATTTGCTTCCTGTTGATATAG
TTGGTCAACCTCAGCTTCTCTAATTTTCTCAACCCTTAATTGATCTTCAA
TTACTCTTTGCATAAACTCTGCATCTTTACGCCTCTCCTCTTTTTGATCT
TGTTTTAATTGAATTTCCTGTTTCTCTATTTGATTGATTTCTTTGAGAAG
TTGCAAGTCATGTTCAAGAGCTTCTTGAACCTGCTTGCTTTTTCGCTTTA
GTTGTTGCTTGTATTGCCTAATCAAAACCATCCCATAGTCTTGTCTTTTC
CTTTGTTCATCGAAAAGTTTGCGCTTTGCTTCAGTTTTTTCCAATAACTG
TTcattttcaataagtttttgCTCTTCTCCTCGAAGAAAATCAGCTTCAC
TTTCCTTTCTTTTCAATTCAGTTATTTGTTGTTGCTGCTCCTCTGCCAAC
ATTcttgctttcatttttcttgccTCTTCTTTCTTGATTTCCTCAGCTTG
TGCCCTTAAATTCTCTTCTTTTAAGTAGTTATCAAGCTTTCTTTGtgttt
caaaatttgttttgatcacttcctcctttttttgaatttgattttcccAC
TGTCCTAAAGCattcttttcaattctttttgatTCTAATTCCCTAAGTCT
TGGTTCATTTTGCCTCCAGTGTTCATAAAGTTTTTCATCTGCCTCCTTTT
TGCGTTTAGTTTCTTTGGCAGCTGCTAAAGCATCTAACTTTTCTTGCATG
GCTTCAGTACTTGAATACCTATTACCCCTCAGACTTTGAATCTCCTTCCT
ATATTTTTCATCTTCTGAATAGATTAAGCTCCTGAGCTTGTCTCGTCTAT
ATTCCAAATTGTTTAGAGAGCTTTCCTTGCtttcaatttcattgaaaagt
ttttcaacagcatttaaacttttatttttcgatCGTTGAGAAGTCCAATC
GTCATTCTTACTTACGATATTATTAGCCTTGTTAAAGTAAGCATTGTGAT
TACTCCATGTTGAACGAACTTGGTTTTCTTTTTCGATCCTTTTGGTTGAG
AAATCTGCTCTGGATTTGTAAGTTTTGATCCAACTTGGCTTGATCGTAGG
GAGCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1491911889:1500280..1502759 | Clytia hemisphaerica | exon |
| TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1510915933:1500280..1502759 | Clytia hemisphaerica | exon |
| TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759 | TCONS_00062134-exon-scaffold_361-1575043694:1500280..1502759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1500280..1502759 . |
Blast
BLAST of TCONS_00062134 vs. Swiss-Prot (Human)
Match: TCHP (Trichoplein keratin filament-binding protein OS=Homo sapiens GN=TCHP PE=1 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 9.997e-44 Identity = 158/451 (35.03%), Postives = 268/451 (59.42%), Query Frame = 1
Query: 76 MALPTIKPSWIKTYKSRADFSTKRIEKENQVRSTWSNHNAYFNKANNIVSKNDDWTSQRSKNKSLNAVEKLFNEIESKESSLNNLEYRRDKLRSLIYSEDEKYRKEIQSLRGNRYSSTEAMQEKLDXXXXXXXXXXXXXXXXXLYEHWRQNEPRLRELESKRIEKNALGQWENQIQKKEEVIKTNFETQRKLDNYLKEENLRAQAEEIKK----EEARKMKARMLAEEQQQQITELKRKESEADFLRGEEQKLIENEQLLEKTEAKRKLFDEQRKRQDYGMVLIRQYKQQLKRKSKQVQEALEHDLQLLKEINQIEKQEIQLKQDQKEERRKDAEFMQRVIEDQLRVEKIREAEVDQLYQQEANRQWRKRESEWEMERLARDRLINAVFXXXXXXXXXXXXXXXXXKQESIMEREQLLEELEDHQRLTHRENEAALSQRKIREQELHEQIT 1416
MALPT+ W + + +R E+E ++R W ++ YF ++ SK +W+S+ S +S++A + + KE +LE RR+KLR L+ E + +E++ LR + ++E+ L +AKE +RK A++ LYEHW++N P+LRE+E +K+ + WE Q ++K++ T + ++ +N E RA+ E +++ EE R+++ ++ AE QQ+ ELK KE EA L+ E++ L++ LE+ E +RK + R++ + G L QY QL R+++Q+QE LE D ++L+ + + E + +L ++E+ D +M++ IE+QL++E+ REAE+ L ++EA W KRE+EW ER ARDRL++ V RQQQIQ K+EQ ++ ++ES+ REQL+ LE+ + L RE E + + R+QEL Q+
Sbjct: 1 MALPTLPSYWCSQQRLNQQLARQR-EQEARLRQQWEQNSRYFRMSDICSSKQAEWSSKTSYQRSMHA----YQREKMKEEKRRSLEARREKLRQLMQEEQDLLARELEELRLSMNLQERRIREQHGKLKSAKEEQRKLIAEQLLYEHWKKNNPKLREMELDLHQKHVVNSWEMQKEEKKQQEATAEQENKRYEN----EYERARREALERMKAEEERRQLEDKLQAEALLQQMEELKLKEVEATKLKKEQENLLKQRWELERLEEERKQMEAFRQKAELGRFLRHQYNAQLSRRTQQIQEELEADRRILQALLEKEDESQRLHLARREQVMADVAWMKQAIEEQLQLERAREAELQMLLREEAKEMWEKREAEWARERSARDRLMSEVLTGRQQQIQEKIEQNRRAQEESLKHREQLIRNLEEVRELARREKEESEKLKSARKQELEAQVA 442
The following BLAST results are available for this feature:
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