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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062036 ID=TCONS_00062036|Name=TCONS_00062036|organism=Clytia hemisphaerica|type=transcript|length=900bp
CTGTCATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTAGT
GGAACATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAATT
CTCGAATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTATCTGA
AAAAATCTTGTGATGGCCAAAGTGGATGTGGATtgcaaacaaagaaaatt
gaaaaagatttcgGAAATCCGTGCGAAAATAAACAAaccagaaaattctt
ggaagtcAAATTCAAATGTGTTTCCAAAGTTCAAACGACTCCCCAAATCG
CAACAACGAAACAGGGGAAAAAACGAACAACACAAGcaacacaaacaaca
aagacaacTACAATAACTACAACCGCCATCCCGCCAACTACAACAACTAC
AACCACCACTCCACCAACGCCACCTCCTTATCTAAGAAAGACATTGTGTC
AAGGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTCTGTAATCCGG
ATATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTTGTCCCTCATC
GAACCCCCGAAACGATGACATCACATGTTACATCAATGCTGTACCCTACA
CGAAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGATGACATCACA
TGTTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAGGAAAAGC
ATTTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAAGCTTGCAAAG
ACATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATGTGTTGCTAAA
GgttCCTTCACCCCGAAGTATGACCGCACACCACCATTGATTCCCTCTGT
TCCAACTGCTCCTTCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTA Run BLAST on NCBI protein sequence of TCONS_00062036-protein >TCONS_00062036-protein ID=TCONS_00062036-protein|Name=TCONS_00062036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
VIGCFNPPNQVLQILSGTYGRTNSHSCRSYSKFSNDDNKKCWHDVTKYLK
KSCDGQSGCGLQTKKIEKDFGNPCENKQTRKFLEVKFKCVSKVQTTPQIA
TTKQGKKRTTQATQTTKTTTITTTAIPPTTTTTTTTPPTPPPYLRKTLCQ
GKGSFIGCFTQGSVIRILNATFGRTDPNTCPSSNPRNDDITCYINAVPYT
KFQCEGKXNPRNDDITCFINAVPYTKFQCEGKAFCALNSDPGQYGQACKD
ISIRSFLDVKYKCVAKGSFTPKYDRTPPLIPSVPTAPSSNRTSNSSSSG Run BLAST on NCBI transcript from alignment at scaffold_361:1096396..1099551- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062036 ID=TCONS_00062036|Name=TCONS_00062036|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at scaffold_361:1096396..1099551- (Clytia hemisphaerica)
CTGTCATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTAGT
GGAACATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAATT
CTCGAATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTATGCTA
ATTGTTTTAAAGTCTGTGTAACAGTGGGTATTAAGGAAAAGGATGCTACA
CATCTTTTTTTTATAAGCAACCAGGTTGCTAAGGCTCGAGGGCTCAGATT
TGCCAATTTTTTTGCTATTTTGTAAAGTAAAAGCTTTTTGAATAATCAAA
GCACGGCAAACGATAGCAATTGACCCAATAAGCTTAAATATGGTATAATA
TCAGGGGTGACCCAAAGTAATAGAATGCTAAGCAACTCCACGGAAAATTA
AATTTGCTTATAAAAAATGTGTACATGGACTACGCATTTCCCAGAAGGGA
ACAAAACACCAAATCGACGGATTAAGGGCTCTGACCATAGTCGGAAAATT
GATTTTAGTATTTGAAAACAAAAGTTATGTTTTAGGTATTTAGGAAAAGG
ATACTTACTACACATTCCAATTTTTTTACTATTTCGTAAAGTAAAAGCTT
TTTAGATAATCTAAGCATGACAAACGATAGCCATTGACCCACAAATATGG
TAAAATATCAGAGTGACCCAAAGCAATATAATGCTAAGATAGAGTGCTGA
CCCGATATTTGCTTATAAAAATGTGGACATGGACTACACAAAACACCAAA
TCGACGGATTAAGATTTTTGAAAAAGTAGAACTTTTTTGAGTATCTTTAG
GGTAATCTTTTTGCAAGTTTGGTAACAACTTTTGAAAAATAGCTTTTTAC
TATGTTCAATATGTTATTTTAAATATGTTATAACTTTTAACGAAATTTTA
TCCTCCATAGGCTGTGAAGTGTAACTTGCCCCCCTACCCCGAGTTTTGTT
TTCGTTGAAAATATATTCAGGAATGCAACATTATTAAAAGTAAAATGAAA
TGCAGATTATATCAATATATAGATTATGACAGAGTTTAATCGTGTTTCAA
GGTATCTGAAAAAATCTTGTGATGGCCAAAGTGGATGTGGATTGCAAACA
AAGAAAATTGAAAAAGATTTCGGAAATCCGTGCGAAAATAAACAAACCAG
AAAATTCTTGGAAGTCAAATTCAAATGTGTTTCCAAAGGTTTGTAAAATT
ATCAATAGTAAAAAATAAACTCTCCTCAATAGAAAATGCCTTAACTCTAT
AAAGCAGTATCATAATGCAAGAGTTGGCTAAATTCTTATTTCAAACTCAA
AGTTCATGGTGCGTCCACGCCAATCTTCAGTGGAAAAGTTATGATACGAT
TTTTTTGACATTTGAGGTCAACAAGGTTGCTTTGATTATTCAGGGAATTA
TGTTTGTTTGTACAATACCGTGAATTCTAAATCATGGATTCGTACAGTTG
ATTTGAAATTTTCGCCAGAGAAAAGATAGATATTTCAAAATGAAACCTTT
ACTGGCAAGTGAACCGGTCCGAAAAATTTTCGAAAATTAATAAGCGGGGG
GGACGTCTATTCGGGACCTTTAAAGTAAGTAAGTATATTTATCTGTCGGC
TATGGGTGGAGCCGGGGTGAGGGAGTCTACTACCTTATCTATTTGTGCTC
GACAAGATATAATAATTCTCATTATAGTTCAAACGACTCCCCAAATCGCA
ACAACGAAACAGGGGAAAAAACGAACAACACAAGCAACACAAACAACAAA
GACAACTACAATAACTACAACCGCCATCCCGCCAACTACAACAACTACAA
CCACCACTCCACCAACGCCACCTCCTTATCTAAGAAGTAAGAATACACTC
TTTTTTGTAAGAACCAGTAAACTTTGGCCTTTTTTAAGCACTTTAAGCCT
AAAATTGTTCTTATTCTGTTCTTAAGTTCAAGGAAAATTTCAGAATTTTT
TAAACTTTAATTCCTATTTTAAGAGTTAGGCCTTTGATTTGCTAAAAATT
CAGCTATTCCAGGATTGTTCTTAAATTGCCTTTATTTTTTTGGCAATTTT
GAGTCGCAGTATTCTTATAGAATTGCTTTTACAAAAGAAAAAGAGGTATA
GACCTGTATCTGAGATGTTGTTGTCGATGCTTTAACTGCGGTGTCTCTTG
AAAGAGTTTTAAATCACTACAACTTTAACTTTTTAACTTTATATTAAACA
TGCTAAACTAGGTACTGAATATGTGAAATATCAGATAACTAAAATAATCA
CTTCCAACTTCTTTTCATAGAGACATTGTGTCAAGGCAAAGGCTCCTTCA
TCGGTTGCTTTACTCAAGGTTCTGTAATCCGGATATTGAATGCAACTTTC
GGGCGAACAGATCCCAACACTTGTCCCTCATCGAACCCCCGAAACGATGA
CATCACATGTTACATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAG
GAAAAGCNAACCCCCGAAACGATGACATCACATGTTTCATCAATGCTGTA
CCCTACACGAAGTTTCAATGCGAAGGAAAAGCATTTTGTGCTCTGAATAG
TGATCCAGGCCAGTACGGACAAGCTTGCAAAGACATATCTATTCGCTCGT
TTTTGGATGTCAAGTACAAATGTGTTGCTAAAGGTCAGTGAAAGCCTAAG
CAGCGGAAAGCTCCAGCAGTGTTGGCACTGTCAGCATATCTTTCCGCTGC
AGAATCGCAATACAACAGGAGCAAATTTTTTCAGTGTATAGACTCGAGTC
GGGCTTTAAACTTTTTTCTACTAATTAAAATTAAGAAAGAAAGATTTGAC
CATATAAGTTGGAGGTATTAATTATATGTGGTTTTTCTTACGCATGCGCA
CAATAGAAAATCGATTGATAACTGTGCGCATAGACCCCGACAAAGTCAAT
TTTCTTCGACCAGTTGTGTTTTAAAGGAGCATTGCGCTGCGCGCTGGGCC
AATTATTTTGTACTTAGTTGACAGAAATTTTTTTTTCTCACCAAGTTCCA
TGGTGAAAGGGAATACAAGGGATATATAAATATTGTAAGGTCTTTTTTTA
ATTTCAGGTTCCTTCACCCCGAAGTATGACCGCACACCACCATTGATTCC
CTCTGTTCCAACTGCTCCTTCGTCCAACCGAACTTCAAACTCTTCCAGTT
CCGGTA Coding sequence (CDS) from alignment at scaffold_361:1096396..1099551- >TCONS_00062036 ID=TCONS_00062036|Name=TCONS_00062036|organism=Clytia hemisphaerica|type=CDS|length=4485bp|location=Sequence derived from alignment at scaffold_361:1096396..1099551- (Clytia hemisphaerica)
GTTCCTTCACCCCGAAGTATGACCGCACACCACCATTGATTCCCTCTGTT
CCAACTGCTCCTTCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTAG
ACATTGTGTCAAGGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTC
TGTAATCCGGATATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTT
GTCCCTCATCGAACCCCCGAAACGATGACATCACATGTTACATCAATGCT
GTACCCTACACGAAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGA
TGACATCACATGTTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCG
AAGGAAAAGCATTTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAA
GCTTGCAAAGACATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATG
TGTTGCTAAAGTTCAAACGACTCCCCAAATCGCAACAACGAAACAGGGGA
AAAAACGAACAACACAAGCAACACAAACAACAAAGACAACTACAATAACT
ACAACCGCCATCCCGCCAACTACAACAACTACAACCACCACTCCACCAAC
GCCACCTCCTTATCTAAGAAGTATCTGAAAAAATCTTGTGATGGCCAAAG
TGGATGTGGATTGCAAACAAAGAAAATTGAAAAAGATTTCGGAAATCCGT
GCGAAAATAAACAAACCAGAAAATTCTTGGAAGTCAAATTCAAATGTGTT
TCCAAAGGTCATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTC
TTAGTGGAACATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGC
AAATTCTCGAATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTT
CCTTCACCCCGAAGTATGACCGCACACCACCATTGATTCCCTCTGTTCCA
ACTGCTCCTTCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTAGACA
TTGTGTCAAGGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTCTGT
AATCCGGATATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTTGTC
CCTCATCGAACCCCCGAAACGATGACATCACATGTTACATCAATGCTGTA
CCCTACACGAAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGATGA
CATCACATGTTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAG
GAAAAGCATTTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAAGCT
TGCAAAGACATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATGTGT
TGCTAAAGTTCAAACGACTCCCCAAATCGCAACAACGAAACAGGGGAAAA
AACGAACAACACAAGCAACACAAACAACAAAGACAACTACAATAACTACA
ACCGCCATCCCGCCAACTACAACAACTACAACCACCACTCCACCAACGCC
ACCTCCTTATCTAAGAAGTATCTGAAAAAATCTTGTGATGGCCAAAGTGG
ATGTGGATTGCAAACAAAGAAAATTGAAAAAGATTTCGGAAATCCGTGCG
AAAATAAACAAACCAGAAAATTCTTGGAAGTCAAATTCAAATGTGTTTCC
AAAGGTCATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTA
GTGGAACATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAA
TTCTCGAATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTTCCT
TCACCCCGAAGTATGACCGCACACCACCATTGATTCCCTCTGTTCCAACT
GCTCCTTCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTAGACATTG
TGTCAAGGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTCTGTAAT
CCGGATATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTTGTCCCT
CATCGAACCCCCGAAACGATGACATCACATGTTACATCAATGCTGTACCC
TACACGAAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGATGACAT
CACATGTTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAGGAA
AAGCATTTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAAGCTTGC
AAAGACATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATGTGTTGC
TAAAGTTCAAACGACTCCCCAAATCGCAACAACGAAACAGGGGAAAAAAC
GAACAACACAAGCAACACAAACAACAAAGACAACTACAATAACTACAACC
GCCATCCCGCCAACTACAACAACTACAACCACCACTCCACCAACGCCACC
TCCTTATCTAAGAAGTATCTGAAAAAATCTTGTGATGGCCAAAGTGGATG
TGGATTGCAAACAAAGAAAATTGAAAAAGATTTCGGAAATCCGTGCGAAA
ATAAACAAACCAGAAAATTCTTGGAAGTCAAATTCAAATGTGTTTCCAAA
GGTCATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTAGTG
GAACATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAATTC
TCGAATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTTCCTTCA
CCCCGAAGTATGACCGCACACCACCATTGATTCCCTCTGTTCCAACTGCT
CCTTCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTAGACATTGTGT
CAAGGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTCTGTAATCCG
GATATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTTGTCCCTCAT
CGAACCCCCGAAACGATGACATCACATGTTACATCAATGCTGTACCCTAC
ACGAAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGATGACATCAC
ATGTTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAGGAAAAG
CATTTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAAGCTTGCAAA
GACATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATGTGTTGCTAA
AGTTCAAACGACTCCCCAAATCGCAACAACGAAACAGGGGAAAAAACGAA
CAACACAAGCAACACAAACAACAAAGACAACTACAATAACTACAACCGCC
ATCCCGCCAACTACAACAACTACAACCACCACTCCACCAACGCCACCTCC
TTATCTAAGAAGTATCTGAAAAAATCTTGTGATGGCCAAAGTGGATGTGG
ATTGCAAACAAAGAAAATTGAAAAAGATTTCGGAAATCCGTGCGAAAATA
AACAAACCAGAAAATTCTTGGAAGTCAAATTCAAATGTGTTTCCAAAGGT
CATCGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTAGTGGAA
CATATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAATTCTCG
AATGATGATAACAAGAAATGTTGGCATGATGTTACAAAGTTCCTTCACCC
CGAAGTATGACCGCACACCACCATTGATTCCCTCTGTTCCAACTGCTCCT
TCGTCCAACCGAACTTCAAACTCTTCCAGTTCCGGTAGACATTGTGTCAA
GGCAAAGGCTCCTTCATCGGTTGCTTTACTCAAGGTTCTGTAATCCGGAT
ATTGAATGCAACTTTCGGGCGAACAGATCCCAACACTTGTCCCTCATCGA
ACCCCCGAAACGATGACATCACATGTTACATCAATGCTGTACCCTACACG
AAGTTTCAATGCGAAGGAAAAGCNAACCCCCGAAACGATGACATCACATG
TTTCATCAATGCTGTACCCTACACGAAGTTTCAATGCGAAGGAAAAGCAT
TTTGTGCTCTGAATAGTGATCCAGGCCAGTACGGACAAGCTTGCAAAGAC
ATATCTATTCGCTCGTTTTTGGATGTCAAGTACAAATGTGTTGCTAAAGT
TCAAACGACTCCCCAAATCGCAACAACGAAACAGGGGAAAAAACGAACAA
CACAAGCAACACAAACAACAAAGACAACTACAATAACTACAACCGCCATC
CCGCCAACTACAACAACTACAACCACCACTCCACCAACGCCACCTCCTTA
TCTAAGAAGTATCTGAAAAAATCTTGTGATGGCCAAAGTGGATGTGGATT
GCAAACAAAGAAAATTGAAAAAGATTTCGGAAATCCGTGCGAAAATAAAC
AAACCAGAAAATTCTTGGAAGTCAAATTCAAATGTGTTTCCAAAGGTCAT
CGGGTGTTTCAATCCACCTAACCAAGTCCTGCAAATTCTTAGTGGAACAT
ATGGACGAACGAACTCTCATTCGTGCCGTTCATACAGCAAATTCTCGAAT
GATGATAACAAGAAATGTTGGCATGATGTTACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00062036-exon-scaffold_361-1575043694:1099410..1099551 | TCONS_00062036-exon-scaffold_361-1575043694:1099410..1099551 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1575043694:1098364..1098500 | TCONS_00062036-exon-scaffold_361-1575043694:1098364..1098500 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1575043694:1097716..1097874 | TCONS_00062036-exon-scaffold_361-1575043694:1097716..1097874 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1575043694:1096919..1097281 | TCONS_00062036-exon-scaffold_361-1575043694:1096919..1097281 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1575043694:1096396..1096494 | TCONS_00062036-exon-scaffold_361-1575043694:1096396..1096494 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1510915933:1099410..1099551 | TCONS_00062036-exon-scaffold_361-1510915933:1099410..1099551 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1510915933:1098364..1098500 | TCONS_00062036-exon-scaffold_361-1510915933:1098364..1098500 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1510915933:1097716..1097874 | TCONS_00062036-exon-scaffold_361-1510915933:1097716..1097874 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1510915933:1096919..1097281 | TCONS_00062036-exon-scaffold_361-1510915933:1096919..1097281 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1510915933:1096396..1096494 | TCONS_00062036-exon-scaffold_361-1510915933:1096396..1096494 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1491911889:1099410..1099551 | TCONS_00062036-exon-scaffold_361-1491911889:1099410..1099551 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1491911889:1098364..1098500 | TCONS_00062036-exon-scaffold_361-1491911889:1098364..1098500 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1491911889:1097716..1097874 | TCONS_00062036-exon-scaffold_361-1491911889:1097716..1097874 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1491911889:1096919..1097281 | TCONS_00062036-exon-scaffold_361-1491911889:1096919..1097281 | Clytia hemisphaerica | exon |
| TCONS_00062036-exon-scaffold_361-1491911889:1096396..1096494 | TCONS_00062036-exon-scaffold_361-1491911889:1096396..1096494 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1096396..1099551 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000922 | Lectin_gal-bd_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030246 | carbohydrate binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0030246 |
carbohydrate binding |
Blast
The following BLAST results are available for this feature:
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