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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062010 ID=TCONS_00062010|Name=TCONS_00062010|organism=Clytia hemisphaerica|type=transcript|length=661bp
GAGAAAATTcagaatgaaaatataaaaagatgaaaagaatATTCAAAACT
GCACTCATTTGTTTTGCAATACCACTGACTGCTGTTACAGtgtaCAAACT
TCAGCAAAACAAAAAGCAAGAAGTATGGTCCTTGCAGAAGAAGGAAGAGT
CCCGTCTCTTGTATAAAGCTGGTGGTGCTGTTATTGGTGGTGGACTTGTT
ATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTTAGGGTTCACTTCTGcagG
AATAGCAGCTAGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGTG
CTGCGACAACTGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGGG
TTAGGTATTTTTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTGG
CAATTACCTTGGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGGA
ATGAGTTTGATTTATTTGGATTCcttattcgtgtaataaggtatattGCA
TCGTCAATTTATTGTTGATTGCTGTAGCCATGTTTTTTgtaattgtgttt
tttttactttaccatatttttgagtttttattttgtaattaGAATAATAA
ATTTATGCTTTTGATAGTTTCGTATAATTTAGTttcctaaatttttttat
ttttctcaaac Run BLAST on NCBI protein sequence of TCONS_00062010-protein >TCONS_00062010-protein ID=TCONS_00062010-protein|Name=TCONS_00062010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MKRIFKTALICFAIPLTAVTVYKLQQNKKQEVWSLQKKEESRLLYKAGGA
VIGGGLVILAGPAVLSALGFTSAGIAASSLAAGIQSAFYGAATTGAFSVF
QSAGVSGLGIFSKCALGLTGGIAGNYLGEMMKKKEKPKKWNEFDLFGFLI
RVIRYIASSIYC Run BLAST on NCBI transcript from alignment at scaffold_361:727093..728173- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062010 ID=TCONS_00062010|Name=TCONS_00062010|organism=Clytia hemisphaerica|type=transcript|length=1081bp|location=Sequence derived from alignment at scaffold_361:727093..728173- (Clytia hemisphaerica)
GAGAAAATTCAGAATGAAAATATAAAAAGATGAAAAGAATATTCAAAACT
GCACTCATTTGTTTTGCAATACCACTGACTGCTGTTACAGGTTTGTATTC
TTAACGTGCTGAGTGTTTCAAAAAAGAAATTATTTTAAGTACTACAAGTT
TGAAATTGGATTCTAAATTTTTCGACCTTAGAAAGAGCATAGACTAACTT
AAATTCAGAGCTGTTATACAATGAATTCGGTTACACAAAAAGATTTACGA
GAAAAATTCAATTCGTCAGGTTAATTTTGTTTTGATTTGTTACTTGTCCA
TCATTTCTCTTTTCTTTTTCAGTGTACAAACTTCAGCAAAACAAAAAGCA
AGAAGTATGGTCCTTGCAGAAGAAGGAAGAGTCCCGTCTCTTGTATAAAG
CTGGTGGTGCTGTTATTGGTGGTGGACTTGTTATTTTGGCTGGCCCAGCT
GTTTTGTCTGCCTTAGGGTTCACTTCTGCAGGTTAAAGGTTTTGTTATTA
AATAAGAGTTTAAATATCACACATCATATCATATAGGTAGACACCTTCCT
GATATAAAATATGTGTCTGGTATGAAACGGAAACATTTAACTGAGAAATA
AAACTTTCTTTAATTTTTGTCAGAAATAAATCAGCAGTTTGTGATTCATT
GATTTGTCTTATTTTACAGGAATAGCAGCTAGTAGTCTTGCTGCTGGAAT
TCAAAGTGCATTTTATGGTGCTGCGACAACTGGTGCTTTTTCTGTATTTC
AAAGTGCTGGTGTGAGTGGGTTAGGTATTTTTAGTAAGTGTGCTCTTGGA
TTGACAGGAGGTATAGCTGGCAATTACCTTGGGGAGATGATGAAAAAGAA
GGAAAAGCCAAAGAAATGGAATGAGTTTGATTTATTTGGATTCCTTATTC
GTGTAATAAGGTATATTGCATCGTCAATTTATTGTTGATTGCTGTAGCCA
TGTTTTTTGTAATTGTGTTTTTTTTACTTTACCATATTTTTGAGTTTTTA
TTTTGTAATTAGAATAATAAATTTATGCTTTTGATAGTTTCGTATAATTT
AGTTTCCTAAATTTTTTTATTTTTCTCAAAC Coding sequence (CDS) from alignment at scaffold_361:727093..728173- >TCONS_00062010 ID=TCONS_00062010|Name=TCONS_00062010|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_361:727093..728173- (Clytia hemisphaerica)
GAATAGCAGCTAGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGT
GCTGCGACAACTGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGG
GTTAGGTATTTTTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTG
GCAATTACCTTGGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGG
AATGAGTTTGATTTATTTGGATTCCTTATTCGTGTAATAAGGTATATTGC
ATCGTCAATTTATTGTTGATGTACAAACTTCAGCAAAACAAAAAGCAAGA
AGTATGGTCCTTGCAGAAGAAGGAAGAGTCCCGTCTCTTGTATAAAGCTG
GTGGTGCTGTTATTGGTGGTGGACTTGTTATTTTGGCTGGCCCAGCTGTT
TTGTCTGCCTTAGGGTTCACTTCTGCAGATGAAAAGAATATTCAAAACTG
CACTCATTTGTTTTGCAATACCACTGACTGCTGTTACAGGAATAGCAGCT
AGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGTGCTGCGACAAC
TGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGGGTTAGGTATTT
TTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTGGCAATTACCTT
GGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGGAATGAGTTTGA
TTTATTTGGATTCCTTATTCGTGTAATAAGGTATATTGCATCGTCAATTT
ATTGTTGATGTACAAACTTCAGCAAAACAAAAAGCAAGAAGTATGGTCCT
TGCAGAAGAAGGAAGAGTCCCGTCTCTTGTATAAAGCTGGTGGTGCTGTT
ATTGGTGGTGGACTTGTTATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTT
AGGGTTCACTTCTGCAGATGAAAAGAATATTCAAAACTGCACTCATTTGT
TTTGCAATACCACTGACTGCTGTTACAGGAATAGCAGCTAGTAGTCTTGC
TGCTGGAATTCAAAGTGCATTTTATGGTGCTGCGACAACTGGTGCTTTTT
CTGTATTTCAAAGTGCTGGTGTGAGTGGGTTAGGTATTTTTAGTAAGTGT
GCTCTTGGATTGACAGGAGGTATAGCTGGCAATTACCTTGGGGAGATGAT
GAAAAAGAAGGAAAAGCCAAAGAAATGGAATGAGTTTGATTTATTTGGAT
TCCTTATTCGTGTAATAAGGTATATTGCATCGTCAATTTATTGTTGATGT
ACAAACTTCAGCAAAACAAAAAGCAAGAAGTATGGTCCTTGCAGAAGAAG
GAAGAGTCCCGTCTCTTGTATAAAGCTGGTGGTGCTGTTATTGGTGGTGG
ACTTGTTATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTTAGGGTTCACTT
CTGCAGATGAAAAGAATATTCAAAACTGCACTCATTTGTTTTGCAATACC
ACTGACTGCTGTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062010-exon-scaffold_361-1575043694:728084..728173 | TCONS_00062010-exon-scaffold_361-1575043694:728084..728173 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1575043694:727693..727851 | TCONS_00062010-exon-scaffold_361-1575043694:727693..727851 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1575043694:727093..727504 | TCONS_00062010-exon-scaffold_361-1575043694:727093..727504 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1510915933:728084..728173 | TCONS_00062010-exon-scaffold_361-1510915933:728084..728173 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1510915933:727693..727851 | TCONS_00062010-exon-scaffold_361-1510915933:727693..727851 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1510915933:727093..727504 | TCONS_00062010-exon-scaffold_361-1510915933:727093..727504 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1491911889:728084..728173 | TCONS_00062010-exon-scaffold_361-1491911889:728084..728173 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1491911889:727693..727851 | TCONS_00062010-exon-scaffold_361-1491911889:727693..727851 | Clytia hemisphaerica | exon |
| TCONS_00062010-exon-scaffold_361-1491911889:727093..727504 | TCONS_00062010-exon-scaffold_361-1491911889:727093..727504 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:727093..728173 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009311 | IFI6/IFI27 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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