TCONS_00062009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062009
Unique NameTCONS_00062009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062009 ID=TCONS_00062009|Name=TCONS_00062009|organism=Clytia hemisphaerica|type=transcript|length=617bp
ccggtagttgGTTGGATTATTGTACCATTAAAAATGTTGGTATAGCAGCA
GCTGGAGGTGTTGCAGCTGTAGGATTGGCCACGGTAGCTTTACCGGCTGC
AGGTTTTACAGCTTCTGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTC
AAGGTGCAGTTTATGGTGGAGCAACATCTGGATTGTTTTCTGCTGCCACA
AGTGCTGGTGCTGCTGGTATGGGTGCTGCTACACAAGTAGTGATTGGAGG
AGCTGGTGCAGCAGCTACATGCAAAGTTTTAGGCACTGATTCTAAAGACA
AAACATCTACCTAGATCTACGGTGTAGTGTTTCCAGGTGATTTATAAGAT
TATTATGAATTTTGTTGCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAG
GTATGTAGTTTCTTGTGTTTCTGATCTTTTATTCATATAGCAATTAAGTA
GCAATCATACAAAAAGTATAATATACCAGATCTGTTGTAGAGATTAAGCT
ATCTCAGAATAGGGCTAACTCAGAATCACCCATTTCAATCATCACAGGTG
ACTCTTTGACATCAGATCCTGAGAAAGTAGCCAATTccttcaatgatttt
ttcactACTATAGCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_361:724699..730803-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062009 ID=TCONS_00062009|Name=TCONS_00062009|organism=Clytia hemisphaerica|type=transcript|length=6105bp|location=Sequence derived from alignment at scaffold_361:724699..730803- (Clytia hemisphaerica)
CCGGTAGTTGGTTGGATTATTGTACCATTAAAAATGTTGGTATAGCAGCA
GCTGGAGGTGTTGCAGCTCCAATTGTGGTCGCGGCAGCTTTACCTGCTGC
AGGTTTTACAGCTTCTGGTAGGTTTAAATTCCTTTTCGATAGTGTGATAT
TGGTTTCAAAAACTAAAGAATTGTAACTTTTTTGTTGAAGCGGCAAAACA
ATTCTTTTTCAGATGGGAATTTGATAAATTATATCATTTTTTAGGGCTAG
TCCCTGTTGCGATAAAGGGAATGTGAATAGCAAATTCTAGTATCAACACA
GCAATTGTCTAGAAACATTAATAGTAGGGGGCAAACCCTTAGGACCTGTG
GCATCTTTTATACAAAACTCAAACCTGGTCTATTTCAAAGACTGAAGTAT
TTAAAGAATTTTTTGTGAAGGGGTTTTTTACTTTGGCCTAAGAAAACCTT
TTAGGACTAAAAAATTGAAATCATAGGCAAAACCCCTTTTCATAAAAAAT
TTGACGAAATTTCAAAGTCAACAAAACCTGAAACCACTAATACCCAACCA
AAAGCTATCAATAAATGATATAGATGACTTTTAAGTAGATATAGTCAATT
TCCAAACGCCACTTGAGTAAATCGACTGAAAATGACATCAAAACGCAACT
TTGACTTTAATTTTCTCAAGATACCGTCAACTGCTCTAACTTGGGACTAT
CTGACAAAACATGGGACGGCAATTCGGTCACCATTTTACCGAACCTCCAA
AGTCATTTAATTTGAGTTAATGAACGGCGTATTAAAACATACACAATTTC
TCTTTCGCACCGAGTAGGCTTTTAAAATCGAAATATGAAAAAAATTTGTA
GTGGATCACGATGGAGCGATTGACGTCACTCGCGCGACGAGTTACACACT
CATCATTTGTTTATCCCATCGGGCAATAGGCGGTTAGGCGGCGGGCATTC
TCTAATTCTCCAATCAACGTCTGTTCATTTTGAATGGAAACAAAAAAGTT
AAAAAGGGAGCGCTATCAGTGAAAGTTATCGTGACATATTATGACAGAAG
GTATGATTGATAAACTTGGTGGAGTTATCAAAACAAATTTGTCGTCAAAG
ATATTAAACAGTAAGTGAAAATATAGGCCAGATTATCAACAGTCCCATGT
TTTGACCAATCGTCCCAAGTTAGAGCAGTTAACGGTAGGTTGGGAAATCG
ACTATATCCACTTAAAAGTCCTCTACATTGTTTATCTTATTTTAGTTTGT
CTTCTATATCATAAAAAATGTCACGGATGTTAAGGGTTTGCCCCCTACTA
CTACACAGTTTAAATTCAAACATTTAACAATGCTTACCCTGGTTTGATTA
AAGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTAT
GGTGGAGCAACATCTGGATTGTTTTCTGGTGCTGCAAGTGCTGGTGCTGC
TGGCATGGGTGCTGCTACAAAAGCGGTGATTGGAGGAGCTGCTGCAGCAG
CTACATACAAATTTGCTGGTTCTTCATGTGATGCCAAGCCCGAAAAATGT
GACAAAGAATGAAAATTTCCTATTAATTTTTCTCTTTTTTTTTCGTACTT
AGCATAAAAGTTGTTCAATTTAAATTTATTTTCATGGTCACTCTTTATTT
TTTTTATACTAACAATATTTTGATCTGCTTGGTGCAGGTGTCTACACAAA
CATTTGAAGGCATTAGCATGACTTTGTTTATTGGATAAAAGTCAACATAG
TGTCTTCTCTCTGATGTATGAGAACATTGGTTTCCAAAACGTAGACGTCA
CATACTGACCATCATCTAATTTAAGATGATGTTCAATATGTGGCACTGTT
TGACCGAATTGGATTTCCAATGTTTTTTTTGTAGTTTAATATTTTTCAAC
TTACCAAGAAATTTGATTTTGTTGATGGTCTCCTTTGCACTTTGTTACCT
TGGTGAAAGTATCTGCAACTTAATTGTCGTTGTTCAGGGACCAAAAAACT
TGACAACAACTTTTAAAATGTTTTCCAAATTCTACTTGAATTACTTGAAT
TAGATTTTTGTAAAACATAACATAAACATAGACATTTAGACATAGTGTTA
ATAAATTTGTTGTGTTTTCATTTTGAGACTCGCTCACTGACAGCATTAAG
AATATCTATCGCCCCGAGAAATCCATGTTCAGTCTTTAAATCAGTAATCT
AGTTATTTTGTTGTTGTTTAAATTTAAATTTCTTAAAATTGTTACTGATA
TATTTTTGCATTTTCAGCTGGTCTGAGGTGTGTATTTGTATACTTTTTGT
AAATTTTGTGATTATCTTGAAATATAATTATTGTTATTTTTGGTTTGTTT
TTCCAGACTTTAACTTTGGTGAGTCTTTATTATTATGATATTTTTTTTAT
CGTCAACAAGCATAGTTTGTTGCTAGCATGTGAAAACCATGTTAATGTTG
CTGTTCCCGTGTCAGAGTAATTCCCTTGAGGGTGGTTTCTACGTGGTAGA
AATAAGATCGCAGACTTAAAGAAAGGACAATAGTTATCATTCCTTATCAT
TTCAAACTTCAATAATAGAAAGATGACTTTTTATCACTTTGCTTGATCTT
TGACTATATATACTCAATATATTTCTTTTAGAGAAAATTCAGAATGAAAA
TATAAAAAGATGAAAAGAATATTCAAAACTGCACTCATTTGTTTTGCAAT
ACCACTGACTGCTGTTACAGGTTTGTATTCTTAACGTGCTGAGTGTTTCA
AAAAAGAAATTATTTTAAGTACTACAAGTTTGAAATTGGATTCTAAATTT
TTCGACCTTAGAAAGAGCATAGACTAACTTAAATTCAGAGCTGTTATACA
ATGAATTCGGTTACACAAAAAGATTTACGAGAAAAATTCAATTCGTCAGG
TTAATTTTGTTTTGATTTGTTACTTGTCCATCATTTCTCTTTTCTTTTTC
AGTGTACAAACTTCAGCAAAACAAAAAGCAAGAAGTATGGTCCTTGCAGA
AGAAGGAAGAGTCCCGTCTCTTGTATAAAGCTGGTGGTGCTGTTATTGGT
GGTGGACTTGTTATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTTAGGGTT
CACTTCTGCAGGTTAAAGGTTTTGTTATTAAATAAGAGTTTAAATATCAC
ACATCATATCATATAGGTAGACACCTTCCTGATATAAAATATGTGTCTGG
TATGAAACGGAAACATTTAACTGAGAAATAAAACTTTCTTTAATTTTTGT
CAGAAATAAATCAGCAGTTTGTGATTCATTGATTTGTCTTATTTTACAGG
AATAGCAGCTAGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGTG
CTGCGACAACTGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGGG
TTAGGTATTTTTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTGG
CAATTACCTTGGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGGA
ATGAGTTTGATTTATTTGGATTCCTTATTCGTGTAATAAGGTATATTGCA
TCGTCAATTTATTGTTGATTGCTGTAGCCATGTTTTTTGTAATTGTGTTT
TTTTTACTTTACCATATTTTTGAGTTTTTATTTTGTAATTAGAATAATAA
ATTTATGCTTTTGATAGTTTCGTATAATTTAGTTTCCTAAATTTTTTTAT
TTTTCTCAAACATTATAATCCTGATTTTTGCATTGTACAATTTTCATAAT
AATTATTCTTTTAGGTAAGAAATAAAACGTACATGGAATGATGGGCTTTG
GAACACAACCAAAGATAATTACGATTATGATCAACATAAAAAATACGAGT
AATCTGATTAGCTAAGACCGCCTTCAAAAATGGGTTCTGGTAAGCTAGAG
ATCATATTTTTTACAATTTTACGATAATTTTTAATGACGTGGTGGTATAC
CCTAAAAACTTAAAAATCCTTTTAGTTTCGTATCTTGCTAAAATACCAAA
AAGGTGGTATCCAGACTAAAATTTGAGAATATTTTTACTAATTTGGTACT
AAAAAATTGGCAATTTTCATAATTTTTTGAATTTTTTTTCAGAATTTTTC
CTCAGAACTTTTCGTGCATTATTCAGAATTTTTACAATCCTCCCCCTGTC
TAGAGGTAAAGGTAGAGAAAAATTTCGACGAATTTATCCCATAATGTACT
CGGTACCGTGCAATAAATATTACAATTATTATGTGTAACATAATTTTGAC
TATTATCTGAAAGATATAGCTTATACAACATACAATGATGCAAAAAGATG
GCTTGGATACCGCTAGCCATTTTTGTTTCATGTTAGAACTCAGCTCTCAG
AATGGATCAAGTCATTTCAATTCATTATCACTCAAGTTGTTTCTTATTTG
ATTATAGTGTCTTTCGAATGAAAATCGAACCAAAACAAACAATTTATTCA
ATCGACCTCAGCAATAGCAAGAGAATATTTTAGAAATGAAAAATATTTTC
TGTGTTTATCAACATCTCATCTTCTGCATGAACTTTAATTTGGTTACTAT
AGCAATAGTTTTAAAATGGTACATCATAAATGGCCGTTACTTATAGTTAA
GTTATAGATAAATAATGTGTTAGTAATTGTTGTAGGTTTTCGAGTTATAA
CAGGTAAAAGTATGGAAAAGCTAATAAGAGATAGTGAACAACTCAAAAAA
GTGCAAATTTTGGGCTTAATTCGTGCACAACAAAGAATGATGATTTGAAT
ATAAATTATAGAATAGTATAAAATAGGTTAAGTTCAAAAAAGATAACCAG
CTATTTTCAAAAGCTTTGAGTGAAGTTAAAATCGACAAATGAGGGAATTG
ATGACGAGATAGTGAAATTCTCCCTCTAATCAGCTGAAATGAGCTTTAAA
ATCTCTTGAATATAAATATCTTAGGATACTTTTCGCTGTCATTCTTTTAG
AAAAATGCAAATGATCAATTCCATTAAATTTGTTTTATTTCTTTATTTTG
CAGGGGTAAAAGTTAAAAGTATATAGAAATATTAAAAGACTGGTATTGCT
CATCACAGGGCTAAATAGGTACGTTCTTATTGTTTCAAACAATTAATCTC
TTCTTCTGTTGACACTTTTTATTTTTTTAGAATATAGAGGTATTAACATT
GTCGCCGAAAGTGTTTCTATAACATTTGTAATACATTTTTAAACTAAAGA
AATATAAACCAGCTTTTTATTCTTTTATAGTGATGGCTGAAAAAGTGGAT
GAGACTAGTTGGTCGGATTATTTTACTGCTAGGAATGTTGCTAAGGCAAC
TGCTGGAGGTGTTGCAGCTGTAGGATTGGCCACGGTAGCTTTACCGGCTG
CAGGTTTTACAGCTTCTGGTAGGTGTACTTGAATATTCAAGATGATACTA
TTTTTGACTAGAAAATGCCTGATGTCTTAGATCCCTAACGAAAAACTCAA
TGATATAAAAGTAAGATAAATTCAAGTGATTCTAAGAGAATTGTCTGTTT
TATTAACAAGCTCAGTTTTNTAAATTCAAGTGATTCTAAGAGAAACTTCT
ATTTTATTAACAAGCTCAGTTTTTCAAAAATAATTTGATTTACTTTTGAT
TATAGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTT
ATGGTGGAGCAACATCTGGATTGTTTTCTGCTGCCACAAGTGCTGGTGCT
GCTGGTATGGGTGCTGCTACACAAGTAGTGATTGGAGGAGCTGGTGCAGC
AGCTACATGCAAAGTTTTAGGCACTGATTCTAAAGACAAAACATCTACCT
AGATCTACGGTGTAGTGTTTCCAGGTGATTTATAAGATTATTATGAATTT
TGTTGCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAGGTATGTAGTTTC
TTGTGTTTCTGATCTTTTATTCATATAGCAATTAAGTAGCAATCATACAA
AAAGTATAATATACCAGATCTGTTGTAGAGATTAAGCTATCTCAGAATAG
GGCTAACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTGACAT
CAGATCCTGAGAAAGTAGCCAATTCCTTCAATGATTTTTTCACTACTATA
GCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038868XLOC_038868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062009-exon-scaffold_361-1575043694:730747..730803TCONS_00062009-exon-scaffold_361-1575043694:730747..730803Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1575043694:725436..725495TCONS_00062009-exon-scaffold_361-1575043694:725436..725495Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1575043694:724699..725198TCONS_00062009-exon-scaffold_361-1575043694:724699..725198Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1510915933:730747..730803TCONS_00062009-exon-scaffold_361-1510915933:730747..730803Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1510915933:725436..725495TCONS_00062009-exon-scaffold_361-1510915933:725436..725495Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1510915933:724699..725198TCONS_00062009-exon-scaffold_361-1510915933:724699..725198Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1491911889:730747..730803TCONS_00062009-exon-scaffold_361-1491911889:730747..730803Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1491911889:725436..725495TCONS_00062009-exon-scaffold_361-1491911889:725436..725495Clytia hemisphaericaexon
TCONS_00062009-exon-scaffold_361-1491911889:724699..725198TCONS_00062009-exon-scaffold_361-1491911889:724699..725198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:724699..730803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6328	17.4887	10.6067	10.3076	4.13844	4.36912	5.5379	10.0423	15.4996	16.7689	18.6932	20.0797	23.7278	22.3699	19.5399	21.768	15.2238	17.3329	51.8525	58.3483	12.3624	12.7739	12.0398	16.4197	23.6037	30.8172	11.5948	18.6475	9.70709	10.9959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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