TCONS_00062007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062007
Unique NameTCONS_00062007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062007 ID=TCONS_00062007|Name=TCONS_00062007|organism=Clytia hemisphaerica|type=transcript|length=563bp
GAGGTGTTGCAGCTCCAATTGTGGTCGCGGCAGCTTTACCTGCTGCAGGT
TTTACAGCTTCTGGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGG
TGCAGTTTATGGTGGAGCAACATCTGGATTGTTTTCTGCTGCCACAAGTG
CTGGTGCTGCTGGTATGGGTGCTGCTACACAAGTAGTGATTGGAGGAGCT
GGTGCAGCAGCTACATGCAAAGTTTTAGGCACTGATTCTAAAGACAAAAC
ATCTACCTAGATCTACGGTGTAGTGTTTCCAGGTGATTTATAAGATTATT
ATGAATTTTGTTGCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAGGTAT
GTAGTTTCTTGTGTTTCTGATCTTTTATTCATATAGCAATTAAGTAGCAA
TCATACAAAAAGTATAATATACCAGATCTGTTGTAGAGATTAAGCTATCT
CAGAATAGGGCTAACTCAGAATCACCCATTTCAATCATCACAGGTGACTC
TTTGACATCAGATCCTGAGAAAGTAGCCAATTccttcaatgattttttca
ctACTATAGCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_361:724699..730749-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062007 ID=TCONS_00062007|Name=TCONS_00062007|organism=Clytia hemisphaerica|type=transcript|length=6051bp|location=Sequence derived from alignment at scaffold_361:724699..730749- (Clytia hemisphaerica)
GAGGTGTTGCAGCTCCAATTGTGGTCGCGGCAGCTTTACCTGCTGCAGGT
TTTACAGCTTCTGGTAGGTTTAAATTCCTTTTCGATAGTGTGATATTGGT
TTCAAAAACTAAAGAATTGTAACTTTTTTGTTGAAGCGGCAAAACAATTC
TTTTTCAGATGGGAATTTGATAAATTATATCATTTTTTAGGGCTAGTCCC
TGTTGCGATAAAGGGAATGTGAATAGCAAATTCTAGTATCAACACAGCAA
TTGTCTAGAAACATTAATAGTAGGGGGCAAACCCTTAGGACCTGTGGCAT
CTTTTATACAAAACTCAAACCTGGTCTATTTCAAAGACTGAAGTATTTAA
AGAATTTTTTGTGAAGGGGTTTTTTACTTTGGCCTAAGAAAACCTTTTAG
GACTAAAAAATTGAAATCATAGGCAAAACCCCTTTTCATAAAAAATTTGA
CGAAATTTCAAAGTCAACAAAACCTGAAACCACTAATACCCAACCAAAAG
CTATCAATAAATGATATAGATGACTTTTAAGTAGATATAGTCAATTTCCA
AACGCCACTTGAGTAAATCGACTGAAAATGACATCAAAACGCAACTTTGA
CTTTAATTTTCTCAAGATACCGTCAACTGCTCTAACTTGGGACTATCTGA
CAAAACATGGGACGGCAATTCGGTCACCATTTTACCGAACCTCCAAAGTC
ATTTAATTTGAGTTAATGAACGGCGTATTAAAACATACACAATTTCTCTT
TCGCACCGAGTAGGCTTTTAAAATCGAAATATGAAAAAAATTTGTAGTGG
ATCACGATGGAGCGATTGACGTCACTCGCGCGACGAGTTACACACTCATC
ATTTGTTTATCCCATCGGGCAATAGGCGGTTAGGCGGCGGGCATTCTCTA
ATTCTCCAATCAACGTCTGTTCATTTTGAATGGAAACAAAAAAGTTAAAA
AGGGAGCGCTATCAGTGAAAGTTATCGTGACATATTATGACAGAAGGTAT
GATTGATAAACTTGGTGGAGTTATCAAAACAAATTTGTCGTCAAAGATAT
TAAACAGTAAGTGAAAATATAGGCCAGATTATCAACAGTCCCATGTTTTG
ACCAATCGTCCCAAGTTAGAGCAGTTAACGGTAGGTTGGGAAATCGACTA
TATCCACTTAAAAGTCCTCTACATTGTTTATCTTATTTTAGTTTGTCTTC
TATATCATAAAAAATGTCACGGATGTTAAGGGTTTGCCCCCTACTACTAC
ACAGTTTAAATTCAAACATTTAACAATGCTTACCCTGGTTTGATTAAAGG
TGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTATGGTG
GAGCAACATCTGGATTGTTTTCTGGTGCTGCAAGTGCTGGTGCTGCTGGC
ATGGGTGCTGCTACAAAAGCGGTGATTGGAGGAGCTGCTGCAGCAGCTAC
ATACAAATTTGCTGGTTCTTCATGTGATGCCAAGCCCGAAAAATGTGACA
AAGAATGAAAATTTCCTATTAATTTTTCTCTTTTTTTTTCGTACTTAGCA
TAAAAGTTGTTCAATTTAAATTTATTTTCATGGTCACTCTTTATTTTTTT
TATACTAACAATATTTTGATCTGCTTGGTGCAGGTGTCTACACAAACATT
TGAAGGCATTAGCATGACTTTGTTTATTGGATAAAAGTCAACATAGTGTC
TTCTCTCTGATGTATGAGAACATTGGTTTCCAAAACGTAGACGTCACATA
CTGACCATCATCTAATTTAAGATGATGTTCAATATGTGGCACTGTTTGAC
CGAATTGGATTTCCAATGTTTTTTTTGTAGTTTAATATTTTTCAACTTAC
CAAGAAATTTGATTTTGTTGATGGTCTCCTTTGCACTTTGTTACCTTGGT
GAAAGTATCTGCAACTTAATTGTCGTTGTTCAGGGACCAAAAAACTTGAC
AACAACTTTTAAAATGTTTTCCAAATTCTACTTGAATTACTTGAATTAGA
TTTTTGTAAAACATAACATAAACATAGACATTTAGACATAGTGTTAATAA
ATTTGTTGTGTTTTCATTTTGAGACTCGCTCACTGACAGCATTAAGAATA
TCTATCGCCCCGAGAAATCCATGTTCAGTCTTTAAATCAGTAATCTAGTT
ATTTTGTTGTTGTTTAAATTTAAATTTCTTAAAATTGTTACTGATATATT
TTTGCATTTTCAGCTGGTCTGAGGTGTGTATTTGTATACTTTTTGTAAAT
TTTGTGATTATCTTGAAATATAATTATTGTTATTTTTGGTTTGTTTTTCC
AGACTTTAACTTTGGTGAGTCTTTATTATTATGATATTTTTTTTATCGTC
AACAAGCATAGTTTGTTGCTAGCATGTGAAAACCATGTTAATGTTGCTGT
TCCCGTGTCAGAGTAATTCCCTTGAGGGTGGTTTCTACGTGGTAGAAATA
AGATCGCAGACTTAAAGAAAGGACAATAGTTATCATTCCTTATCATTTCA
AACTTCAATAATAGAAAGATGACTTTTTATCACTTTGCTTGATCTTTGAC
TATATATACTCAATATATTTCTTTTAGAGAAAATTCAGAATGAAAATATA
AAAAGATGAAAAGAATATTCAAAACTGCACTCATTTGTTTTGCAATACCA
CTGACTGCTGTTACAGGTTTGTATTCTTAACGTGCTGAGTGTTTCAAAAA
AGAAATTATTTTAAGTACTACAAGTTTGAAATTGGATTCTAAATTTTTCG
ACCTTAGAAAGAGCATAGACTAACTTAAATTCAGAGCTGTTATACAATGA
ATTCGGTTACACAAAAAGATTTACGAGAAAAATTCAATTCGTCAGGTTAA
TTTTGTTTTGATTTGTTACTTGTCCATCATTTCTCTTTTCTTTTTCAGTG
TACAAACTTCAGCAAAACAAAAAGCAAGAAGTATGGTCCTTGCAGAAGAA
GGAAGAGTCCCGTCTCTTGTATAAAGCTGGTGGTGCTGTTATTGGTGGTG
GACTTGTTATTTTGGCTGGCCCAGCTGTTTTGTCTGCCTTAGGGTTCACT
TCTGCAGGTTAAAGGTTTTGTTATTAAATAAGAGTTTAAATATCACACAT
CATATCATATAGGTAGACACCTTCCTGATATAAAATATGTGTCTGGTATG
AAACGGAAACATTTAACTGAGAAATAAAACTTTCTTTAATTTTTGTCAGA
AATAAATCAGCAGTTTGTGATTCATTGATTTGTCTTATTTTACAGGAATA
GCAGCTAGTAGTCTTGCTGCTGGAATTCAAAGTGCATTTTATGGTGCTGC
GACAACTGGTGCTTTTTCTGTATTTCAAAGTGCTGGTGTGAGTGGGTTAG
GTATTTTTAGTAAGTGTGCTCTTGGATTGACAGGAGGTATAGCTGGCAAT
TACCTTGGGGAGATGATGAAAAAGAAGGAAAAGCCAAAGAAATGGAATGA
GTTTGATTTATTTGGATTCCTTATTCGTGTAATAAGGTATATTGCATCGT
CAATTTATTGTTGATTGCTGTAGCCATGTTTTTTGTAATTGTGTTTTTTT
TACTTTACCATATTTTTGAGTTTTTATTTTGTAATTAGAATAATAAATTT
ATGCTTTTGATAGTTTCGTATAATTTAGTTTCCTAAATTTTTTTATTTTT
CTCAAACATTATAATCCTGATTTTTGCATTGTACAATTTTCATAATAATT
ATTCTTTTAGGTAAGAAATAAAACGTACATGGAATGATGGGCTTTGGAAC
ACAACCAAAGATAATTACGATTATGATCAACATAAAAAATACGAGTAATC
TGATTAGCTAAGACCGCCTTCAAAAATGGGTTCTGGTAAGCTAGAGATCA
TATTTTTTACAATTTTACGATAATTTTTAATGACGTGGTGGTATACCCTA
AAAACTTAAAAATCCTTTTAGTTTCGTATCTTGCTAAAATACCAAAAAGG
TGGTATCCAGACTAAAATTTGAGAATATTTTTACTAATTTGGTACTAAAA
AATTGGCAATTTTCATAATTTTTTGAATTTTTTTTCAGAATTTTTCCTCA
GAACTTTTCGTGCATTATTCAGAATTTTTACAATCCTCCCCCTGTCTAGA
GGTAAAGGTAGAGAAAAATTTCGACGAATTTATCCCATAATGTACTCGGT
ACCGTGCAATAAATATTACAATTATTATGTGTAACATAATTTTGACTATT
ATCTGAAAGATATAGCTTATACAACATACAATGATGCAAAAAGATGGCTT
GGATACCGCTAGCCATTTTTGTTTCATGTTAGAACTCAGCTCTCAGAATG
GATCAAGTCATTTCAATTCATTATCACTCAAGTTGTTTCTTATTTGATTA
TAGTGTCTTTCGAATGAAAATCGAACCAAAACAAACAATTTATTCAATCG
ACCTCAGCAATAGCAAGAGAATATTTTAGAAATGAAAAATATTTTCTGTG
TTTATCAACATCTCATCTTCTGCATGAACTTTAATTTGGTTACTATAGCA
ATAGTTTTAAAATGGTACATCATAAATGGCCGTTACTTATAGTTAAGTTA
TAGATAAATAATGTGTTAGTAATTGTTGTAGGTTTTCGAGTTATAACAGG
TAAAAGTATGGAAAAGCTAATAAGAGATAGTGAACAACTCAAAAAAGTGC
AAATTTTGGGCTTAATTCGTGCACAACAAAGAATGATGATTTGAATATAA
ATTATAGAATAGTATAAAATAGGTTAAGTTCAAAAAAGATAACCAGCTAT
TTTCAAAAGCTTTGAGTGAAGTTAAAATCGACAAATGAGGGAATTGATGA
CGAGATAGTGAAATTCTCCCTCTAATCAGCTGAAATGAGCTTTAAAATCT
CTTGAATATAAATATCTTAGGATACTTTTCGCTGTCATTCTTTTAGAAAA
ATGCAAATGATCAATTCCATTAAATTTGTTTTATTTCTTTATTTTGCAGG
GGTAAAAGTTAAAAGTATATAGAAATATTAAAAGACTGGTATTGCTCATC
ACAGGGCTAAATAGGTACGTTCTTATTGTTTCAAACAATTAATCTCTTCT
TCTGTTGACACTTTTTATTTTTTTAGAATATAGAGGTATTAACATTGTCG
CCGAAAGTGTTTCTATAACATTTGTAATACATTTTTAAACTAAAGAAATA
TAAACCAGCTTTTTATTCTTTTATAGTGATGGCTGAAAAAGTGGATGAGA
CTAGTTGGTCGGATTATTTTACTGCTAGGAATGTTGCTAAGGCAACTGCT
GGAGGTGTTGCAGCTGTAGGATTGGCCACGGTAGCTTTACCGGCTGCAGG
TTTTACAGCTTCTGGTAGGTGTACTTGAATATTCAAGATGATACTATTTT
TGACTAGAAAATGCCTGATGTCTTAGATCCCTAACGAAAAACTCAATGAT
ATAAAAGTAAGATAAATTCAAGTGATTCTAAGAGAATTGTCTGTTTTATT
AACAAGCTCAGTTTTNTAAATTCAAGTGATTCTAAGAGAAACTTCTATTT
TATTAACAAGCTCAGTTTTTCAAAAATAATTTGATTTACTTTTGATTATA
GGTGTTGCTGCTGGAAGTGCTGCAGCTTGGGTTCAAGGTGCAGTTTATGG
TGGAGCAACATCTGGATTGTTTTCTGCTGCCACAAGTGCTGGTGCTGCTG
GTATGGGTGCTGCTACACAAGTAGTGATTGGAGGAGCTGGTGCAGCAGCT
ACATGCAAAGTTTTAGGCACTGATTCTAAAGACAAAACATCTACCTAGAT
CTACGGTGTAGTGTTTCCAGGTGATTTATAAGATTATTATGAATTTTGTT
GCTTTTGTTGACTGTGGTAGAAAGGGTGGCAGAGGTATGTAGTTTCTTGT
GTTTCTGATCTTTTATTCATATAGCAATTAAGTAGCAATCATACAAAAAG
TATAATATACCAGATCTGTTGTAGAGATTAAGCTATCTCAGAATAGGGCT
AACTCAGAATCACCCATTTCAATCATCACAGGTGACTCTTTGACATCAGA
TCCTGAGAAAGTAGCCAATTCCTTCAATGATTTTTTCACTACTATAGCTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038868XLOC_038868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062007-exon-scaffold_361-1575043694:730687..730749TCONS_00062007-exon-scaffold_361-1575043694:730687..730749Clytia hemisphaericaexon
TCONS_00062007-exon-scaffold_361-1575043694:724699..725198TCONS_00062007-exon-scaffold_361-1575043694:724699..725198Clytia hemisphaericaexon
TCONS_00062007-exon-scaffold_361-1510915933:730687..730749TCONS_00062007-exon-scaffold_361-1510915933:730687..730749Clytia hemisphaericaexon
TCONS_00062007-exon-scaffold_361-1510915933:724699..725198TCONS_00062007-exon-scaffold_361-1510915933:724699..725198Clytia hemisphaericaexon
TCONS_00062007-exon-scaffold_361-1491911889:730687..730749TCONS_00062007-exon-scaffold_361-1491911889:730687..730749Clytia hemisphaericaexon
TCONS_00062007-exon-scaffold_361-1491911889:724699..725198TCONS_00062007-exon-scaffold_361-1491911889:724699..725198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:724699..730749 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0382	0.471183	1.21738	8.13917	0	0	0	0	10.7251	0.0265493	15.421	11.3739	2.55347	10.5195	1.67909	6.23752	7.36826	4.87994	35.8192	45.5341	0.000471206	6.69489	8.84819	11.8675	0	0	4.90795	6.0535	7.91178	0.342696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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