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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061989 ID=TCONS_00061989|Name=TCONS_00061989|organism=Clytia hemisphaerica|type=transcript|length=1368bp
GCTAATACTACAACTACACATTAAGAACATGCATCATTCACACAATATTG
ATGGAAGCACATGAGTTCCAGACTTGAGGTGATTGCTCGGCATCCCATCT
GAAAGAAAGAACGTATTCACCGGCTGGTAAATCACTTGGTATATGCACCA
AATCAACAATGGAGAATGGGAAATGTTGAAGATGGAAATATCTTCGAACT
CCGTAACCGTAGAGATCTGTTTTTTGTGGCTTAAATTGTGTGCCGTGTGG
ACAGCCGGTAGTGTTGGATAAAAAGCCACCGTAATCTCCAATGCATCCTG
GGATTGGGTTCTTGGTCCATTGTGAGCCTTCTGGGTAGGTTCCTTTGGTG
ACACGTGTAGCTTCAATTTCCACCCTGCTTGTTTTATCCTCACCATATTG
AATCCATTGTTTGTCGCCGATAAACTCCAAAGGAATCTGTTGAAAACATT
CTTCGGTCAATTTGGAATAACCTTCTTCGGGGAGTTTGCATAATCTATAT
GAGTAACCGCCACCGTGGTTGGCAAAGATTCCCCAAATGACTTCCACAAC
TGTATCACGGACCCATTCAGTGACAACAAAGTCGTACGGCATATTAACGT
CTACAAGTTTAGGGCCAAATCCGAACCCACCTcgattttgtgagcatttt
ccACCAATACACCCATTGATGTTACCGCCTGCAACACCACAAGGACTATC
AATAGGGGCAGTGCCTGGTGCTCTCCAAGGATGAGTTAAAATTTCATCTT
GGTTTGGAGCATGCGGATATGTGCGGAGTTCAGGATCAAAAATGGTCGGT
TCCGTAATTCTGGTATTGTTCTTGTACCAAAAGCAAGTGAGCCCTGGTGA
TTTAAAATCTTCGCAAGTATATTTTCCATTGCAAATCACATTTTTTGGGA
TATTTTCACCGGCTAAACATTGTTTACGTGATTTAGTACCAACATAATCG
AAAACCCAAGATCCATCTTGCATTTGAATCCATTGTTTGAATTCTAACCA
TGACAACGGTTCCAACATAGCAGCATGGCTGTCTACATGCTGGACGTAAA
GGCAACCGAGGATAACCAAAAACTGGACAATCAACAAACGCATCTTGTTT
GCGAGAAAGATAACATCAAAGTAGCAACAACCCAAGATGAAAAATCGTAT
AAAGTAAAGTAAAGTGGAATTTGACCCTCTGTCAAGACATGAAAAGAATG
GATTCAAAACTAGACTTTATTGTTTTTATAGGCATAATTTTCGCCAGCTC
AAGTTCCTCTGATTCTGATACACTGACTGTAAcgtaatacacgctttttc
ttttataagaataacttctataagaatatcagggtgagatttcgggttta
aaacaataggcctattgt Run BLAST on NCBI transcript from alignment at scaffold_361:435630..437522- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061989 ID=TCONS_00061989|Name=TCONS_00061989|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at scaffold_361:435630..437522- (Clytia hemisphaerica)
GCTAATACTACAACTACACATTAAGTATTTAATCACTTGAACCATTAAAA
CTCGGGGAGGGGCTTTAGGGAGAGAGAAGTGAGTAAATTCAGTGTTTTTT
AGGCTGGCGAAAATAAATTATTGCAGTGATTTTAGTGATACCCTTCTACG
CAAGGCTGATATCATTGATCCAAATAGATTATACAGTAAGTTATCAGAGG
CAGCGGTAAAAAAAAAAAGATTTTGGAGAATTTATATCCAATTTAAACCC
TACCTTGTTGTAAGATGGAAAATTGCAAAAACGAACAGAGGAGCTTTTTT
GTCTTTTGGGTCCCCAAAAAAATCGGCTGCTGGAGGAGAGAGCAGTCGAT
CCCTCTGCCTCCCCTACTACTGCGTTACTGAATGGAATGAAAGTGAAGAT
TCGTACTGTAAGTTTATGTATTGAAAAAGAAGTCTTGTAATTAAAATGAT
AATAGACAAATGTTACAAAAAATAAAGATATCTAGCTAGATTCTCAAAAT
TGTATTGACTGTTTTAAATTCTAAATTTTCGAAATCTCTCATTGTTCAGG
AACATGCATCATTCACACAATATTGATGGAAGCACATGAGTTCCAGACTT
GAGGTGATTGCTCGGCATCCCATCTGAAAGAAAGAACGTATTCACCGGCT
GGTAAATCACTTGGTATATGCACCAAATCAACAATGGAGAATGGGAAATG
TTGAAGATGGAAATATCTTCGAACTCCGTAACCGTAGAGATCTGTTTTTT
GTGGCTTAAATTGTGTGCCGTGTGGACAGCCGGTAGTGTTGGATAAAAAG
CCACCGTAATCTCCAATGCATCCTGGGATTGGGTTCTTGGTCCATTGTGA
GCCTTCTGGGTAGGTTCCTTTGGTGACACGTGTAGCTTCAATTTCCACCC
TGCTTGTTTTATCCTCACCATATTGAATCCATTGTTTGTCGCCGATAAAC
TCCAAAGGAATCTGTTGAAAACATTCTTCGGTCAATTTGGAATAACCTTC
TTCGGGGAGTTTGCATAATCTATATGAGTAACCGCCACCGTGGTTGGCAA
AGATTCCCCAAATGACTTCCACAACTGTATCACGGACCCATTCAGTGACA
ACAAAGTCGTACGGCATATTAACGTCTACAAGTTTAGGGCCAAATCCGAA
CCCACCTCGATTTTGTGAGCATTTTCCACCAATACACCCATTGATGTTAC
CGCCTGCAACACCACAAGGACTATCAATAGGGGCAGTGCCTGGTGCTCTC
CAAGGATGAGTTAAAATTTCATCTTGGTTTGGAGCATGCGGATATGTGCG
GAGTTCAGGATCAAAAATGGTCGGTTCCGTAATTCTGGTATTGTTCTTGT
ACCAAAAGCAAGTGAGCCCTGGTGATTTAAAATCTTCGCAAGTATATTTT
CCATTGCAAATCACATTTTTTGGGATATTTTCACCGGCTAAACATTGTTT
ACGTGATTTAGTACCAACATAATCGAAAACCCAAGATCCATCTTGCATTT
GAATCCATTGTTTGAATTCTAACCATGACAACGGTTCCAACATAGCAGCA
TGGCTGTCTACATGCTGGACGTAAAGGCAACCGAGGATAACCAAAAACTG
GACAATCAACAAACGCATCTTGTTTGCGAGAAAGATAACATCAAAGTAGC
AACAACCCAAGATGAAAAATCGTATAAAGTAAAGTAAAGTGGAATTTGAC
CCTCTGTCAAGACATGAAAAGAATGGATTCAAAACTAGACTTTATTGTTT
TTATAGGCATAATTTTCGCCAGCTCAAGTTCCTCTGATTCTGATACACTG
ACTGTAACGTAATACACGCTTTTTCTTTTATAAGAATAACTTCTATAAGA
ATATCAGGGTGAGATTTCGGGTTTAAAACAATAGGCCTATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061989-exon-scaffold_361-1575043694:437499..437522 | TCONS_00061989-exon-scaffold_361-1575043694:437499..437522 | Clytia hemisphaerica | exon |
| TCONS_00061989-exon-scaffold_361-1575043694:435630..436973 | TCONS_00061989-exon-scaffold_361-1575043694:435630..436973 | Clytia hemisphaerica | exon |
| TCONS_00061989-exon-scaffold_361-1510915933:437499..437522 | TCONS_00061989-exon-scaffold_361-1510915933:437499..437522 | Clytia hemisphaerica | exon |
| TCONS_00061989-exon-scaffold_361-1510915933:435630..436973 | TCONS_00061989-exon-scaffold_361-1510915933:435630..436973 | Clytia hemisphaerica | exon |
| TCONS_00061989-exon-scaffold_361-1491911889:437499..437522 | TCONS_00061989-exon-scaffold_361-1491911889:437499..437522 | Clytia hemisphaerica | exon |
| TCONS_00061989-exon-scaffold_361-1491911889:435630..436973 | TCONS_00061989-exon-scaffold_361-1491911889:435630..436973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:435630..437522 - |
Blast
The following BLAST results are available for this feature:
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