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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062094 ID=TCONS_00062094|Name=TCONS_00062094|organism=Clytia hemisphaerica|type=transcript|length=1355bp
TCGTTATCATTGACATTGTTTCGTTCAATCAGCGTGTGGTACCAGTATTG
CCGTATACGATGGTTCTTAAACTGTTTCGTTATCATTGACGCTGTTTCGT
TCAATCAGCGTGCGGTACTAGTATTGCCGTATACGATGGTTCTTAAACTG
TTTCGTTATCATTGACATTGTTTCGTTCAATCAGCGTGTGGTACCAGTAT
TGCCGTATACGATGGTTCTTAAACTGTTTCGTTATCATTGACGCTGTTTC
GTTCAATCAGCGTGCGGTACTAGTATTGCCGTATACGATGGTTCTTAAAC
TGTTTCGTTATCATTGACATTGTTTCGTTCAATCAGCGTGTGGTACCAGT
ATTGCCGTATACGATGGTTCTTAAACTGTTTCGTTATCATTGACGCTGTT
TCGTGCAATCAGCGTGCGGTACCAGTATTGTCGTATTTTGGTGAAACAGA
ACAAATACACAATCGGATTTGAGATGAGATAAATTGCATTGGGCAAAAAg
ataaatattttgaagtcGTTAATCATCTGAATGGGAAGATATACTTGGAA
AATCGAAGAAAAGATTCTAGgtacaagaaaaaaacatgtccatatATTTA
ATTTCCAAACATCTTTGATACTCCTTGTCAGTTTGCTGATTATATCTAGC
CGCTCAGCTTCTGTGCCATGAAAGTTTGTGATGTTCTGGAttctagcctc
gttttggttTCGAACTTTGAGAGTCAATTTAGCGAAAACAATGATATAAA
CGCAAGTAATTGATCTTAGACCACCCGAGAAAAACAATGAGTATTGATTC
CTTTGTACTATCTGACCAGCTTGCTTTGTTTGACAGAAAAGTAACGatat
aaaaataacaattaGAGTTACACTCGAAATGAGGATTGCaatattgattt
ttcttctgGTGACCAGTGCATGATATCTCAGAGCAAACTGTATTGCTATC
CAACGATCTGTCACAATCAACATTGTTATCACCAATGACATTGAGTTCGA
AGACATCAAAAAAGAGGATAAGACCACTTTCAATACAATAGATTCTACTT
TGATGCCAACACCTTTTAACAATACGAAGAAAAGGACCCAAGAACCAGCC
AAAGAATCAGTCAAGGATAATACGCGAATCAGATAATAGTTATTGCTTGT
GTGTAAGCGAAGTTTATAGATAACCCACTGAACGGCGAAATGAAGACATA
AAGTTATTGAATATAAGATGAGTGACCCGCCCGGAGGACCAGTTTCCAAG
CTAAAAGTTTCAGTTGTTGAGTTGTTCATGTTCTCAGAGAAAAAGGGCAA
TATTGAAGCCGTTCAATCTTCTTCAAAGAGAAGAGgattaaaaaagcaaa
aaagg Run BLAST on NCBI protein sequence of TCONS_00062094-protein >TCONS_00062094-protein ID=TCONS_00062094-protein|Name=TCONS_00062094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=302bp
MNNSTTETFSLETGPPGGSLILYSITLCLHFAVQWVIYKLRLHTSNNYYL
IRVLSLTDSLAGSWVLFFVLLKGVGIKVESIVLKVVLSSFLMSSNSMSLV
ITMLIVTDRWIAIQFALRYHALVTRRKINIAILISSVTLIVIFISLLFCQ
TKQAGQIVQRNQYSLFFSGGLRSITCVYIIVFAKLTLKVRNQNEARIQNI
TNFHGTEAERLDIISKLTRSIKDVWKLNIWTCFFLVPRIFSSIFQVYLPI
QMINDFKIFIFLPNAIYLISNPIVYLFCFTKIRQYWYRTLIARNSVNDNE
TV Run BLAST on NCBI transcript from alignment at scaffold_361:261039..262393 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062094 ID=TCONS_00062094|Name=TCONS_00062094|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at scaffold_361:261039..262393 (Clytia hemisphaerica)
ccttttttgcttttttaatcCTCTTCTCTTTGAAGAAGATTGAACGGCTT
CAATATTGCCCTTTTTCTCTGAGAACATGAACAACTCAACAACTGAAACT
TTTAGCTTGGAAACTGGTCCTCCGGGCGGGTCACTCATCTTATATTCAAT
AACTTTATGTCTTCATTTCGCCGTTCAGTGGGTTATCTATAAACTTCGCT
TACACACAAGCAATAACTATTATCTGATTCGCGTATTATCCTTGACTGAT
TCTTTGGCTGGTTCTTGGGTCCTTTTCTTCGTATTGTTAAAAGGTGTTGG
CATCAAAGTAGAATCTATTGTATTGAAAGTGGTCTTATCCTCTTTTTTGA
TGTCTTCGAACTCAATGTCATTGGTGATAACAATGTTGATTGTGACAGAT
CGTTGGATAGCAATACAGTTTGCTCTGAGATATCATGCACTGGTCACcag
aagaaaaatcaatattGCAATCCTCATTTCGAGTGTAACTCtaattgtta
tttttatatCGTTACTTTTCTGTCAAACAAAGCAAGCTGGTCAGATAGTA
CAAAGGAATCAATACTCATTGTTTTTCTCGGGTGGTCTAAGATCAATTAC
TTGCGTTTATATCATTGTTTTCGCTAAATTGACTCTCAAAGTTCGAaacc
aaaacgaggctagaaTCCAGAACATCACAAACTTTCATGGCACAGAAGCT
GAGCGGCTAGATATAATCAGCAAACTGACAAGGAGTATCAAAGATGTTTG
GAAATTAAATatatggacatgtttttttcttgtacCTAGAATCTTTTCTT
CGATTTTCCAAGTATATCTTCCCATTCAGATGATTAACgacttcaaaata
tttatcTTTTTGCCCAATGCAATTTATCTCATCTCAAATCCGATTGTGTA
TTTGTTCTGTTTCACCAAAATACGACAATACTGGTACCGCACGCTGATTG
CACGAAACAGCGTCAATGATAACGAAACAGTTTAAGAACCATCGTATACG
GCAATACTGGTACCACACGCTGATTGAACGAAACAATGTCAATGATAACG
AAACAGTTTAAGAACCATCGTATACGGCAATACTAGTACCGCACGCTGAT
TGAACGAAACAGCGTCAATGATAACGAAACAGTTTAAGAACCATCGTATA
CGGCAATACTGGTACCACACGCTGATTGAACGAAACAATGTCAATGATAA
CGAAACAGTTTAAGAACCATCGTATACGGCAATACTAGTACCGCACGCTG
ATTGAACGAAACAGCGTCAATGATAACGAAACAGTTTAAGAACCATCGTA
TACGGCAATACTGGTACCACACGCTGATTGAACGAAACAATGTCAATGAT
AACGA Coding sequence (CDS) from alignment at scaffold_361:261039..262393 >TCONS_00062094 ID=TCONS_00062094|Name=TCONS_00062094|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_361:261039..262393 (Clytia hemisphaerica)
ATGAACAACTCAACAACTGAAACTTTTAGCTTGGAAACTGGTCCTCCGGG
CGGGTCACTCATCTTATATTCAATAACTTTATGTCTTCATTTCGCCGTTC
AGTGGGTTATCTATAAACTTCGCTTACACACAAGCAATAACTATTATCTG
ATTCGCGTATTATCCTTGACTGATTCTTTGGCTGGTTCTTGGGTCCTTTT
CTTCGTATTGTTAAAAGGTGTTGGCATCAAAGTAGAATCTATTGTATTGA
AAGTGGTCTTATCCTCTTTTTTGATGTCTTCGAACTCAATGTCATTGGTG
ATAACAATGTTGATTGTGACAGATCGTTGGATAGCAATACAGTTTGCTCT
GAGATATCATGCACTGGTCACcagaagaaaaatcaatattGCAATCCTCA
TTTCGAGTGTAACTCtaattgttatttttatatCGTTACTTTTCTGTCAA
ACAAAGCAAGCTGGTCAGATAGTACAAAGGAATCAATACTCATTGTTTTT
CTCGGGTGGTCTAAGATCAATTACTTGCGTTTATATCATTGTTTTCGCTA
AATTGACTCTCAAAGTTCGAaaccaaaacgaggctagaaTCCAGAACATC
ACAAACTTTCATGGCACAGAAGCTGAGCGGCTAGATATAATCAGCAAACT
GACAAGGAGTATCAAAGATGTTTGGAAATTAAATatatggacatgttttt
ttcttgtacCTAGAATCTTTTCTTCGATTTTCCAAGTATATCTTCCCATT
CAGATGATTAACgacttcaaaatatttatcTTTTTGCCCAATGCAATTTA
TCTCATCTCAAATCCGATTGTGTATTTGTTCTGTTTCACCAAAATACGAC
AATACTGGTACCGCACGCTGATTGCACGAAACAGCGTCAATGATAACGAA
ACAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062094-exon-scaffold_361-1491911889:261039..262393 | TCONS_00062094-exon-scaffold_361-1491911889:261039..262393 | Clytia hemisphaerica | exon |
| TCONS_00062094-exon-scaffold_361-1510915933:261039..262393 | TCONS_00062094-exon-scaffold_361-1510915933:261039..262393 | Clytia hemisphaerica | exon |
| TCONS_00062094-exon-scaffold_361-1575043694:261039..262393 | TCONS_00062094-exon-scaffold_361-1575043694:261039..262393 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:261039..262393 . |
Blast
The following BLAST results are available for this feature:
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