TCONS_00062088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062088
Unique NameTCONS_00062088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062088 ID=TCONS_00062088|Name=TCONS_00062088|organism=Clytia hemisphaerica|type=transcript|length=789bp
CGGCTGCTGAGCGGTTGCAGTCCTAAATGCAAACACtctatttaaaagaa
aattcatgCACACCAATTAATTTGGGCATAATCTTTGCTTACTTCTAGCT
TTGTCAACAGCAGCAAACATCTGTGAAAACGTTAACGACCATCGATTGAA
AGATCTCGCAGCAAAAACTCCAAACATCCTGATTCGATCAAGAGCAAACT
CGACTTTGCAGAAGTACGACACCTACTTCAGTCAATGGGAATCCTGGGCA
GTCAACTTCAACGAGATAACTCTTTTTCCTGCAGAATCAATATACGTGTC
ACTTTATCTCACCAGTCTAATTCAAGAAAACAAGTCGTACTCCGTAATCG
AAAGTACACTATTCGCAATCAAGCATTATCACGTGTTTGCCGGTTCGCTC
GACCATACGTGTAACAGCTTGGTTGACTATATTGTAGAGGCAGCAAAAAG
AATGAACAATAGACAAACCAAGAAAAAGGAACCTCTTCTATTCGAACTTc
ttacaaaaattttcgaaaacgtTGGTAAGAAAGAATCCACTCTACTAGAC
TTTCGCAATTTTACACTCATGGTGGTTAGCTTCGCTGGTTTTCTGAGATA
TTCTGAAGTGTCAAATTTAACCCTGGGGGATATCGTTTTTGAGCCTACTT
TTATGCGGCTTTTTATTGAACAGAGCAAGACCGACCAATATAGAGAAGGT
CATTGGgtatttattgcaaaaactgTCTCAGAAATTTGTCCGGTGAAAAC
CTTAAACATGTACATCACAAGAGCGGGTATCGAACTCCA
Run BLAST on NCBI

protein sequence of TCONS_00062088-protein

>TCONS_00062088-protein ID=TCONS_00062088-protein|Name=TCONS_00062088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MNNRQTKKKEPLLFELLTKIFENVGKKESTLLDFRNFTLMVVSFAGFLRY
SEVSNLTLGDIVFEPTFMRLFIEQSKTDQYREGHWVFIAKTVSEICPVKT
LNMYITRAGIEL
Run BLAST on NCBI

transcript from alignment at scaffold_361:69575..70363

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062088 ID=TCONS_00062088|Name=TCONS_00062088|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at scaffold_361:69575..70363 (Clytia hemisphaerica)
TGGAGTTCGATACCCGCTCTTGTGATGTACATGTTTAAGGTTTTCACCGG
ACAAATTTCTGAGAcagtttttgcaataaatacCCAATGACCTTCTCTAT
ATTGGTCGGTCTTGCTCTGTTCAATAAAAAGCCGCATAAAAGTAGGCTCA
AAAACGATATCCCCCAGGGTTAAATTTGACACTTCAGAATATCTCAGAAA
ACCAGCGAAGCTAACCACCATGAGTGTAAAATTGCGAAAGTCTAGTAGAG
TGGATTCTTTCTTACCAacgttttcgaaaatttttgtaagAAGTTCGAAT
AGAAGAGGTTCCTTTTTCTTGGTTTGTCTATTGTTCATTCTTTTTGCTGC
CTCTACAATATAGTCAACCAAGCTGTTACACGTATGGTCGAGCGAACCGG
CAAACACGTGATAATGCTTGATTGCGAATAGTGTACTTTCGATTACGGAG
TACGACTTGTTTTCTTGAATTAGACTGGTGAGATAAAGTGACACGTATAT
TGATTCTGCAGGAAAAAGAGTTATCTCGTTGAAGTTGACTGCCCAGGATT
CCCATTGACTGAAGTAGGTGTCGTACTTCTGCAAAGTCGAGTTTGCTCTT
GATCGAATCAGGATGTTTGGAGTTTTTGCTGCGAGATCTTTCAATCGATG
GTCGTTAACGTTTTCACAGATGTTTGCTGCTGTTGACAAAGCTAGAAGTA
AGCAAAGATTATGCCCAAATTAATTGGTGTGcatgaattttcttttaaat
agaGTGTTTGCATTTAGGACTGCAACCGCTCAGCAGCCG

Coding sequence (CDS) from alignment at scaffold_361:69575..70363

>TCONS_00062088 ID=TCONS_00062088|Name=TCONS_00062088|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_361:69575..70363 (Clytia hemisphaerica)
GAGTTCGATACCCGCTCTTGTGATGTACATGTTTAAGGTTTTCACCGGAC
AAATTTCTGAGAcagtttttgcaataaatacCCAATGACCTTCTCTATAT
TGGTCGGTCTTGCTCTGTTCAATAAAAAGCCGCATAAAAGTAGGCTCAAA
AACGATATCCCCCAGGGTTAAATTTGACACTTCAGAATATCTCAGAAAAC
CAGCGAAGCTAACCACCATGAGTGTAAAATTGCGAAAGTCTAGTAGAGTG
GATTCTTTCTTACCAacgttttcgaaaatttttgtaagAAGTTCGAATAG
AAGAGGTTCCTTTTTCTTGGTTTGTCTATTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038911XLOC_038911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062088-proteinTCONS_00062088-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062088-exon-scaffold_361-1491911889:69575..70363TCONS_00062088-exon-scaffold_361-1491911889:69575..70363Clytia hemisphaericaexon
TCONS_00062088-exon-scaffold_361-1510915933:69575..70363TCONS_00062088-exon-scaffold_361-1510915933:69575..70363Clytia hemisphaericaexon
TCONS_00062088-exon-scaffold_361-1575043694:69575..70363TCONS_00062088-exon-scaffold_361-1575043694:69575..70363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:69575..70363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.859556	0.870446	0.294823	0.241461	0	0.0651841	0.101618	0.10673	0	0	0.247888	0.0814758	0.0624196	0	0.183298	0.111823	0.0612978	0.0470655	0	0.0680424	0.0791925	0	1.12081	0.81601	0.098338	0.0586124	0.137533	0	0.783281	0.614182
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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