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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061794 ID=TCONS_00061794|Name=TCONS_00061794|organism=Clytia hemisphaerica|type=transcript|length=2106bp
AAAAAAGTTATGTCATATCTGCAAAAGAATGAAAGTCATCATCAAAGATT
TGAACTTAAGAATACACTTCCAACTCATAATGATGATAATACATCAGAAA
AAATTGTTATTAGTTTGAGTATTACTGTGCTGATTCTTGCAATAATTGTT
ATAATATTTTATTGGTATCGCAGTAAACAAGTACCTCTTGGTTATCAAAG
GGTAAAGACAAATAGTGCTATTAGCTCATCTTATAATTCACACCACAAAC
CAAAACTCACTTTGAAATTACCTCAAGTTTCTGTGTCAAATTTTGAGGAT
GAGAGACGAAAATCTATGGGGAGCACAATAGAACGACATTTTTTATCTGT
CAAAGAGCAAGAAAATATAGATGTAACCACTCCTACAACACCCACAACAC
CAATGACACCAATGACACCTTTATCACCATTAACTCCACTTTCACCGTTA
TCATCTAACCATGGTGCTTCTGAGTTTCCAAAGAAAATGGCTTTGTCAAA
ATCTATATCACTACCCGCCAAAAGTGTTTTTGCTTCAAAAGACATTAATG
CTGACGGTTTATGGAGGAATGCTGTGCGGAAAGCTacaaattctcaattt
ttgcaaaGTCACCCTAAACAAAATAAACGAATATCTTATTGTGCCAgtgg
aaaaatcaaattttctttggtttatgatactcaaaatcaaaaagaacTAA
CAATAAAGattcTGGACTTCATTGATTTACCATTATCCAGAGAAACTGGT
ATTTCTGTTCCCTTTGTGAAAGTCTATTTGTATCCACAAAATGCTCATGC
TATGCCACTGACAGAAGTTTCCAAGAACCTTGGTGCTTTTAAATTAGAAA
TTTTAAGCTATCCTAAAGAGAATTCATGTACATTCTATGGCTGTCCAATC
AACAAACTTTGTAGTTCAGCAATCAAATTTGTTATTTTGGATTATGATCG
TTTTTCAAGAAGTGAGTTTGTTGCGGATAGTGTTATTTTGTTAGACGAAG
TCTCTCTAGAAGGTGAAGCAATTACAAAGCATCTCAATGTACGTCGAACT
AATGTgGATACTGATATGGGTAGTTTGCTGGTATCTCTATGTTATCAACC
TGCTGTTTCAAGAATGTGCATTGTTGTACTCAAAGCAAGTGGTTTGCCAT
ACCATGGAGAGGGCAGTAGTCATGCTCCAGATCATTTTGTTAAAATCAGT
CTGATGAGAAACAATACAGTGCTGGATAAACGGAGGACAAGAGTCATCAA
AAAGACAATATGTCCTGTTTTCAACGAAAGATTAGTGTTTCCAATTGATA
ACCAAAGTATGCGAAGCCTGGTCTTTGTCTTTGATATTATACGTTACGAT
TCAAAGATCAAACAGGAAAAGATTGCAAATGTTGTACTTGGTAACCATAG
CAATACCAGACAAGTGACACCTCATGAAATCCAACATTTCAATGAAATGC
TTGAATCTCCACAAAGACAAATAGCTGAGTGGCATAAGTTGGTGGTATGA
TactcaaatttatttatttcatttttattccttCCATTCTTTatggtttt
tggaaagttttattttcattttgatctcCAAGACAAGACCTGAAGCAGTG
ATATGTAAAAGAGTTTGGGGGTCGCAATTATACTATGTTATGTTTTCTGC
CATAAAAACATAACTTGGCATCCATACCAATAGTTACTTTCGGTGACGTA
AATTTAGATTTAGCtaagaaacttttcattttttggtcTTTTTACTGACT
CGAGATTTCTGACTCATCACTCAAGATTTCTAGCTCATCACTCGAGATTT
CTGACTCACGACTCGAGATTTCTGACTCGTGACTCGAGATTTCTGACTCG
CGACTCGAGATTTCTGACTCACAACTCGAGATTTCTGACTCACAACTTGA
GATTTCTCACTCACAACTCGAGATTTCTGACTCGTGATTCATGactcaat
atttttattttctcatccTCTCAATAGATATTCATTGTAACAGTATTCTT
AAAATTGTTCGCCTGGACTTTGCAGATCAGTGGTAAAGTAACACCaaggt
tttctttttgctttaaaCTGACTGGTTGACCTTACTTGCTAAGTGTAAAA
CAGGTA Run BLAST on NCBI transcript from alignment at scaffold_360:59932..64725- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061794 ID=TCONS_00061794|Name=TCONS_00061794|organism=Clytia hemisphaerica|type=transcript|length=4794bp|location=Sequence derived from alignment at scaffold_360:59932..64725- (Clytia hemisphaerica)
AAAAAAGTTATGTCATATCTGCAAAAGAATGAAAGTCATCATCAAAGATT
TGAACTTAAGAATACACTTCCAACTCATAATGATGATAATACATCAGAAA
AAATTGTTATTAGTTTGAGTATTACTGTGCTGATTCTTGCAATAATTGTT
ATAATATTTTATTGGTATCGCAGTAAACAAGTACCTCTTGGTTATCAAAG
GGTAAAGACAAATAGTGCTATTAGCTCATCTTATAATTCACACCACAAAC
CAAAACTCACTTTGAAATTACCTCAAGTTTCTGTGTCAAATTTTGAGGAT
GAGAGACGAAAATCTATGGGGAGCACAATAGAACGACATTTTTTATCTGT
CAAAGAGCAAGAAAATATAGATGTAACCACTCCTACAACACCCACAACAC
CAATGACACCAATGACACCTTTATCACCATTAACTCCACTTTCACCGTTA
TCATCTAACCATGGTGCTTCTGAGTTTCCAAAGAAAATGGCTTTGTCAAA
ATCTATATCACTACCCGCCAAAAGTGTTTTTGCTTCAAAAGACATTAATG
CTGACGGTTTATGGAGGAATGCTGTGCGGAAAGCTACAAATTCTCAATTT
TTGCAAAGTCACCCTAAACAAAATAAACGAATATCTTATTGTGCCAGTGG
AAAAATCAAATTTTCTTTGGTTTATGATACTCAAAATCAAAAAGAACTAA
CAATAAAGGTACTGTATATATAATTTAAGATTTCATATTTATCCTGTAAC
TTTTAATAAGTAGGGCTTTGCTCTTTGTGTTTTTTTTTTTGATTTCCAGC
GATTGCTTTACAATTTTTCCATTGTCTCAAACTTTCAGATTATAGCTTCC
ATTTTTGTTTTTAGATTCTGGACTTCATTGATTTACCATTATCCAGAGAA
ACTGGTATTTCTGTTCCCTTTGTGAAAGTCTATTTGTATCCACAAAATGC
TCATGCTATGCCACTGACAGAAGTTTCCAAGAACCTTGGTGCTTTTAAAT
TAGAAATTTTAAGCTATCCTAAAGAGAATTCATGTACATTCTATGGCTGT
CCAATCAACAAACTTTGTAGTTCAGCAATCAAATTTGTTATTTTGGATTA
TGATCGTTTTTCAAGAAGTGAGTTTGTTGCGGATAGTGTTATTTTGTTAG
ACGAAGTCTCTCTAGAAGGTGAAGCAATTACAAAGCATCTCAATGTACGT
CGAACTAATGTGGTAAGATTTTATTTTTTGTATCATATTTAGATATCCGT
GTAAAAAGTTGTTATATGGAAAAAGTTCTCTGTAATTGCCACCAGTTTAC
ACTACTAATAATGTAACAAAGAAAACATGGCAATAAGTTATGAGGATGCC
TATTAATGATCAATAATTTTTGTTCTGTTTTTATTTTAGAAGAAGTTCTT
TTCTCCAGGTTTTTCTTCGGTGTAAAGTCAAACATTTTGGGTCTTCGATT
TACATAACATGATCTAACACTTGATTTATTTTAGGATACTGATATGGGTA
GTTTGCTGGTATCTCTATGTTATCAACCTGCTGTTTCAAGAATGTGCATT
GTTGTACTCAAAGCAAGTGGTTTGCCATACCATGGAGAGGGCAGTAGTCA
TGCTCCAGGTATGTATGCATTCTTTCAGTGAGTTTTAAGTGGTTTTCCCT
TACAATACAAAAATAGTCTTAGCAATGTTTTTTGTCATAGACTTTGGCCA
TTTCTTTTTGTTTAAAATCTATGAAGTAGCCTGTTTTTGGTTTTAAGGAG
GAATATTTTTGAGTTTTTATTTACAAACAAAACAGTTTTCAATCATGTTA
TTATTATCTATGAAAACAGATAAATCGACTGAGATGTTGTTAAGTTTTAT
ACAGGATAATCACTCCTTAATCATATCAATTTCCGTATCACTTGTTATCT
TGTTTCCAGAAGGAAAACTATTTAATTTGTGATTTCCTTTAAATCAGTTT
AAATAGCTGTCTGCCGTCTGTAATGTATCTCTATAAGCAGTTGTTTTCAA
TGATAATATATAAACATAAGGGTTTTATAAATCAATTTTAAGTATAACAG
TTTAAAATNATATAAACATAAGGGTTTTATAAATCGATTTTAAGTATAAC
AGTTTAAAATGTTTTGCAAAAAAGACAAAATGTCACGTAAGAAAACAGTG
AAATGTTGCAGGATTAGAGGTGGTAACTCGTCCATCTTTTTTCATAGCAT
ATTTATGAGAATTAGTCAAACACGCTTAGCCCACTTGTACTCTCATTGAT
CCATTTCTCTTATCAATTAATGGTTTTTGAATGCCAATATTCACTTTTTC
TATGCATTAATTAACAGATTAAAAAGGCTTATATCAATCAAATGATAGAG
CTCTTTAAAAACAGCTTGATAAGCCTACACAAGCTTACGTTTTTTTTTCT
GTAGTGCATTACTCTCCTATTCATTGAAATTAAAAAATAGTCAAACATTT
TTAATAAAGGTTTTAGTTTTACATAAGTGTTCCTGTTTCATACCAGACAC
ATGTCTCATATCAGGACAGTGTCTCCTTATTGTTATGTTGTGCTTTTTTT
TAATAAACAACAAACTGTTTTTATTTTCCTTGTTCTGATCAATCTTGCTT
CATATCTATGTCAATTCAACCTGAAAAAATTAAAATTGATGAGTAAGCAA
AGATATCACTCTTATTGAAGTACAAAACCTTTAAAATTATAATCCCTGGG
CAGATATCAATAAAATCATAGTTTTTATCCAACCCATTCACAACCCTAGT
ATTGCCTTTTCTGAAACTTAAAGTTCTCAATATTTCTAAAGGATAGGTTT
CGTTTAAAATGTGCAATTGTAGTTTATCGATAAATACTCAAATCCAGCAC
TAATCAAGTTCATAATTTACCTACCCATTATTGATCATTCCCATCAATAC
CGCCTTTCTCAATATTCAAGGAATTTTACTTATGGTGGGCAAAATTTTCA
GTCTAATTTGAATAATTTGAAGTGGAAGTTATCAATATTTAAAGCGGTCA
AAACAATATTTTTTGCAATAACTTCTACGGGCCATTCCATTTTATAACCA
TACAGAGGGGCTGATAGTGATAAACATTTCCAAGGGGGTAATTCGAGAAG
AATTTCTAGGAGGTGTAAAGAAGTGTTTATTTGTGTTTCCAGGGGGTAAA
AAATTATTCTTAAACTTTCCAGGGGATAAAGGACTGATATTAGTTCGTCC
TCCCTTCACTTTAAGTCATGAAAAGAATTTTTCCAGGTTCCTTTTTGCAA
ATTTTCTACCCCCCCCCCAGTATGAAAAAAGCCCAATTTCAGGCGGTGGT
TACACGTAGCCGGGTTGAAATTCACCCCGAGGTGAAATGGAAAAATAATT
CACCCCGGGGTGAAAATCATTTTGGGATACACGTCGGCGAAAGGCGGGGT
GAAAACCCTTTTTTTCAGTTCGGGGTGAAAATTTTAACTTATTTTCACCC
CAGCGTGAAAACGTAAAGTCTGTCCACGATAAGTGTGCACTCTTTTTTCT
TTTACCTATAACTTTTGAAGAAATTCTTCAATCTTTATAAATTTGGTATC
GTTAGAGAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAATCTTTAA
AAAAATTCTAAAAATGAAGGTGATAATAAAGAAGAAAAAAATGAAGATCT
CAACCCCGGGGTGAGTTCAACCCGCTTAAAAACGGCTTCACCCCGCCTAA
ATACGTGTATACAGAAACAGTGTTTTCTTTATAGACCGGAGTGAAATTCA
CCCCGGCTAGGAAATTCACCCCGGCTACGTGTAACCGCCGCCTCAGATGA
CTTTTTAAAGTGACGTTTCACCCCTATAAAGATGAAAATTGTAACTATTT
CATTTTTTTCATCCCCAGATCATTTTGTTAAAATCAGTCTGATGAGAAAC
AATACAGTGCTGGATAAACGGAGGACAAGAGTCATCAAAAAGACAATATG
TCCTGTTTTCAACGAAAGATTAGTGTTTCCAATTGATAACCAAAGTATGC
GAAGCCTGGTCTTTGTCTTTGATATTATACGTTACGATTCAAAGATCAAA
CAGGAAAAGATTGCAAATGTTGTACTTGGTAACCATAGCAATACCAGACA
AGTGACACCTCATGAAATCCAACATTTCAATGAAATGCTTGAATCTCCAC
AAAGACAAATAGCTGAGTGGCATAAGTTGGTGGTATGATACTCAAATTTA
TTTATTTCATTTTTATTCCTTCCATTCTTTATGGTTTTTGGAAAGTTTTA
TTTTCATTTTGATCTCCAAGACAAGACCTGAAGCAGTGATATGTAAAAGA
GTTTGGGGGTCGCAATTATACTATGTTATGTTTTCTGCCATAAAAACATA
ACTTGGCATCCATACCAATAGTTACTTTCGGTGACGTAAATTTAGATTTA
GCTAAGAAACTTTTCATTTTTTGGTCTTTTTACTGACTCGAGATTTCTGA
CTCATCACTCAAGATTTCTAGCTCATCACTCGAGATTTCTGACTCACGAC
TCGAGATTTCTGACTCGTGACTCGAGATTTCTGACTCGCGACTCGAGATT
TCTGACTCACAACTCGAGATTTCTGACTCACAACTTGAGATTTCTCACTC
ACAACTCGAGATTTCTGACTCGTGATTCATGACTCAATATTTTTATTTTC
TCATCCTCTCAATAGATATTCATTGTAACAGTATTCTTAAAATTGTTCGC
CTGGACTTTGCAGATCAGTGGTAAAGTAACACCAAGGTTTTCTTTTTGCT
TTAAACTGACTGGTTGACCTTACTTGCTAAGTGTAAAACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061794-exon-scaffold_360-1575043694:64018..64725 | TCONS_00061794-exon-scaffold_360-1575043694:64018..64725 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1575043694:63514..63861 | TCONS_00061794-exon-scaffold_360-1575043694:63514..63861 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1575043694:63118..63241 | TCONS_00061794-exon-scaffold_360-1575043694:63118..63241 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1575043694:59932..60857 | TCONS_00061794-exon-scaffold_360-1575043694:59932..60857 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1510915933:64018..64725 | TCONS_00061794-exon-scaffold_360-1510915933:64018..64725 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1510915933:63514..63861 | TCONS_00061794-exon-scaffold_360-1510915933:63514..63861 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1510915933:63118..63241 | TCONS_00061794-exon-scaffold_360-1510915933:63118..63241 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1510915933:59932..60857 | TCONS_00061794-exon-scaffold_360-1510915933:59932..60857 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1491911889:64018..64725 | TCONS_00061794-exon-scaffold_360-1491911889:64018..64725 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1491911889:63514..63861 | TCONS_00061794-exon-scaffold_360-1491911889:63514..63861 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1491911889:63118..63241 | TCONS_00061794-exon-scaffold_360-1491911889:63118..63241 | Clytia hemisphaerica | exon |
| TCONS_00061794-exon-scaffold_360-1491911889:59932..60857 | TCONS_00061794-exon-scaffold_360-1491911889:59932..60857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:59932..64725 - |
Blast
BLAST of TCONS_00061794 vs. Swiss-Prot (Human)
Match: SYT7 (Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3) HSP 1 Score: 137.887 bits (346), Expect = 7.116e-35 Identity = 84/282 (29.79%), Postives = 145/282 (51.42%), Query Frame = 1
Query: 649 GKIKFSLVYDTQNQKELTIKILDFIDLPLSRETGISVPFVKVYLYPQNAHAMPLTEVSKNLGAFKLEILSYPKENSCTFYGCPINKLCSSAIKFVILDYDRFSRSEFVADSVILLDEVSL-EGEAITKHLNVRRTNVDTDMGSLLVSLCYQPAVSRMCIVVLKASGLPYHGEGSSHAPDHFVKISLMRNNTVLDKRRTRVIKKTICPVFNERLVFPIDNQSMRSLVFVFDIIRYDSKIKQEKIANVVLGNHSNTRQVTPHEIQHFNEMLESPQRQIAEWHKL 1491
G+I+FS+ Y+ Q + LT+KI+ +LP +G S PFVK+YL P H + KNL E F G P K+ + +LDYDRFSR++ + + I L++V L + + K L ++ G LL+SLCY P+ + + + ++KA L G + P +VK+ LM + ++K++T +K+ + P+FNE F I + +R + ++ D + + I + L S P E++H+ +M+ P++ +A+WH+L
Sbjct: 137 GRIQFSVGYNFQ-ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF--------LFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPC-SDGSGSRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDP--YVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG-----PGEVKHWKDMIARPRQPVAQWHQL 401
The following BLAST results are available for this feature:
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