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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061701 ID=TCONS_00061701|Name=TCONS_00061701|organism=Clytia hemisphaerica|type=transcript|length=890bp
TTTAGGATCATACTCTGAGCATTCGGAATGGACAATCGAAAACGCATACC
TCAAACGAAACGTACTATATTACGGATGTTGTCCTGAACCTTACCCTGAT
GTGACTGCTGAATTCACGTTGAAACGGAAACCTCTGTTTTACGTATTGAA
TCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGCTTCTAGCTTTCT
TTCTACCAGCTGAATCAGGTGAACGAATCTCCTTTGCTGTCACTCTGATG
TTGGCATTGACAGTCTTCATGTTGATTGTTGCAGATATGATTCCTGCTAA
TTCGGAAATAGTTCCAATgcttggaatatttttcacttgtgTTATGATTG
AAATGGTCTTAATGGTATTTGCTATGTGTTATACACTGAACCTACATTTC
AAAGAGCCAAATGCTGAAAACCGTATTGGAAAGTGGACTCGGGCAATAGT
CTATAATCGGCTTGCAATCTATCTCGGGGTACGTAAACGGGATGAGAAAT
TCGCAAACGCCAATGGACGGTGCACTGCAAGAAAATATGCGAACGGTAAT
GGGCCTTATGAAGACGATGGAATTGAAGAcgttgctgcaaacaaaaacgT
AGTCCGTTTTACAGGATTGAGTCATATCGACAAGTCTGACTTCGAAAAGG
AAAGTACGTCAACGAAGCTGATGAAGAAGAGCATCAAAATGGCTGAAGAT
AAAGCTCGTgaagaagaaattgagaaaatcatcaaaagtgaGCTTGTTAT
CTGCGCTAAAACTTTCGATGTACTTTGCTTGATGGTGTTTGCGTTTATGT
TTGtgttgattttgttgatttatCTACTAAGCTCTGATGCTTGATTACGA
TTAATGTTTTGATTGCTCAGTATTATGTcatatatgattt Run BLAST on NCBI protein sequence of TCONS_00061701-protein >TCONS_00061701-protein ID=TCONS_00061701-protein|Name=TCONS_00061701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
LGSYSEHSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLN
LLLPMIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPAN
SEIVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIV
YNRLAIYLGVRKRDEKFANANGRCTARKYANGNGPYEDDGIEDVAANKNV
VRFTGLSHIDKSDFEKESTSTKLMKKSIKMAEDKAREEEIEKIIKSELVI
CAKTFDVLCLMVFAFMFVLILLIYLLSSDA Run BLAST on NCBI transcript from alignment at scaffold_36:1503809..1505288- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061701 ID=TCONS_00061701|Name=TCONS_00061701|organism=Clytia hemisphaerica|type=transcript|length=1480bp|location=Sequence derived from alignment at scaffold_36:1503809..1505288- (Clytia hemisphaerica)
TTTAGGATCATACTCTGAGCATTCGGAATGGACAATCGAAAACGCATACC
TCAAACGAAACGTACTATATTACGGATGTTGTCCTGAACCTTACCCTGAT
GTGACTGCTGAATTCACGTTGAAACGGAAACCTCTGTTTTACGTATTGAA
TCTATTGCTACCAATGATTTTTATTGGTGTTTTGACGCTTCTAGCTTTCT
TTCTACCAGCTGAATCAGGTAGGTGCATCGAATGTCTAGAATGAAAACTC
TTTGGACTAAGGCGTCAATGCCTGAAACCAGGGGCTCCCAGTTAGAATTT
GTCTGTACACAGACCAAGACAGACCAAGTATCTACAGCTAATTTCAAAAT
TCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTACTCATTTGAGTTTTT
TCAAACCAACCACTGCGATGGTGAGAGAGGGGAGACGATGAGAGAAATGT
TGGTATTTATAAATAATACATCATCACAGAGGCCTCCGTACGGCAATTTT
GTTTGCGTTGACCGCAATTTTGTTATCAAACAAACAATGCGCACAGAGTA
TACTACGAAGCGATAAAGGTGATATACACTCTGGTAGAGAGTAGGTTAGA
ATCCCCATTTTAATTTAGTTTATATAGATAGAGCTGGCCGTGGACCCCGT
GAAAACAATCCAAAGACTGTCTGAAAATTCTAGATTACTAGGCTTGCCCA
CGTCAAATATCGGCTCTTAGGAACGTTTTCGGCCAATCGAAAAATAATCA
ATGATCAAATCGAAAAATAATCAATGTTCAAATCTATGAAATTTTCGTTA
TCTGTTAGGTGAACGAATCTCCTTTGCTGTCACTCTGATGTTGGCATTGA
CAGTCTTCATGTTGATTGTTGCAGATATGATTCCTGCTAATTCGGAAATA
GTTCCAATGCTTGGAATATTTTTCACTTGTGTTATGATTGAAATGGTCTT
AATGGTATTTGCTATGTGTTATACACTGAACCTACATTTCAAAGAGCCAA
ATGCTGAAAACCGTATTGGAAAGTGGACTCGGGCAATAGTCTATAATCGG
CTTGCAATCTATCTCGGGGTACGTAAACGGGATGAGAAATTCGCAAACGC
CAATGGACGGTGCACTGCAAGAAAATATGCGAACGGTAATGGGCCTTATG
AAGACGATGGAATTGAAGACGTTGCTGCAAACAAAAACGTAGTCCGTTTT
ACAGGATTGAGTCATATCGACAAGTCTGACTTCGAAAAGGAAAGTACGTC
AACGAAGCTGATGAAGAAGAGCATCAAAATGGCTGAAGATAAAGCTCGTG
AAGAAGAAATTGAGAAAATCATCAAAAGTGAGCTTGTTATCTGCGCTAAA
ACTTTCGATGTACTTTGCTTGATGGTGTTTGCGTTTATGTTTGTGTTGAT
TTTGTTGATTTATCTACTAAGCTCTGATGCTTGATTACGATTAATGTTTT
GATTGCTCAGTATTATGTCATATATGATTT Coding sequence (CDS) from alignment at scaffold_36:1503809..1505288- >TCONS_00061701 ID=TCONS_00061701|Name=TCONS_00061701|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at scaffold_36:1503809..1505288- (Clytia hemisphaerica)
GTGAACGAATCTCCTTTGCTGTCACTCTGATGTTGGCATTGACAGTCTTC
ATGTTGATTGTTGCAGATATGATTCCTGCTAATTCGGAAATAGTTCCAAT
GCTTGGAATATTTTTCACTTGTGTTATGATTGAAATGGTCTTAATGGTAT
TTGCTATGTGTTATACACTGAACCTACATTTCAAAGAGCCAAATGCTGAA
AACCGTATTGGAAAGTGGACTCGGGCAATAGTCTATAATCGGCTTGCAAT
CTATCTCGGGGTACGTAAACGGGATGAGAAATTCGCAAACGCCAATGGAC
GGTGCACTGCAAGAAAATATGCGAACGGTAATGGGCCTTATGAAGACGAT
GGAATTGAAGACGTTGCTGCAAACAAAAACGTAGTCCGTTTTACAGGATT
GAGTCATATCGACAAGTCTGACTTCGAAAAGGAAAGTACGTCAACGAAGC
TGATGAAGAAGAGCATCAAAATGGCTGAAGATAAAGCTCGTGAAGAAGAA
ATTGAGAAAATCATCAAAAGTGAGCTTGTTATCTGCGCTAAAACTTTCGA
TGTACTTTGCTTGATGGTGTTTGCGTTTATGTTTGTGTTGATTTTGTTGA
TTTATCTACTAAGCTCTGATGCTTGATTAGGATCATACTCTGAGCATTCG
GAATGGACAATCGAAAACGCATACCTCAAACGAAACGTACTATATTACGG
ATGTTGTCCTGAACCTTACCCTGATGTGACTGCTGAATTCACGTTGAAAC
GGAAACCTCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTATT
GGTGTTTTGACGCTTCTAGCTTTCTTTCTACCAGCTGAATCAGGTGAACG
AATCTCCTTTGCTGTCACTCTGATGTTGGCATTGACAGTCTTCATGTTGA
TTGTTGCAGATATGATTCCTGCTAATTCGGAAATAGTTCCAATGCTTGGA
ATATTTTTCACTTGTGTTATGATTGAAATGGTCTTAATGGTATTTGCTAT
GTGTTATACACTGAACCTACATTTCAAAGAGCCAAATGCTGAAAACCGTA
TTGGAAAGTGGACTCGGGCAATAGTCTATAATCGGCTTGCAATCTATCTC
GGGGTACGTAAACGGGATGAGAAATTCGCAAACGCCAATGGACGGTGCAC
TGCAAGAAAATATGCGAACGGTAATGGGCCTTATGAAGACGATGGAATTG
AAGACGTTGCTGCAAACAAAAACGTAGTCCGTTTTACAGGATTGAGTCAT
ATCGACAAGTCTGACTTCGAAAAGGAAAGTACGTCAACGAAGCTGATGAA
GAAGAGCATCAAAATGGCTGAAGATAAAGCTCGTGAAGAAGAAATTGAGA
AAATCATCAAAAGTGAGCTTGTTATCTGCGCTAAAACTTTCGATGTACTT
TGCTTGATGGTGTTTGCGTTTATGTTTGTGTTGATTTTGTTGATTTATCT
ACTAAGCTCTGATGCTTGATTAGGATCATACTCTGAGCATTCGGAATGGA
CAATCGAAAACGCATACCTCAAACGAAACGTACTATATTACGGATGTTGT
CCTGAACCTTACCCTGATGTGACTGCTGAATTCACGTTGAAACGGAAACC
TCTGTTTTACGTATTGAATCTATTGCTACCAATGATTTTTATTGGTGTTT
TGACGCTTCTAGCTTTCTTTCTACCAGCTGAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061701-exon-scaffold_36-1575043694:1505071..1505288 | TCONS_00061701-exon-scaffold_36-1575043694:1505071..1505288 | Clytia hemisphaerica | exon |
| TCONS_00061701-exon-scaffold_36-1575043694:1503809..1504480 | TCONS_00061701-exon-scaffold_36-1575043694:1503809..1504480 | Clytia hemisphaerica | exon |
| TCONS_00061701-exon-scaffold_36-1510915933:1505071..1505288 | TCONS_00061701-exon-scaffold_36-1510915933:1505071..1505288 | Clytia hemisphaerica | exon |
| TCONS_00061701-exon-scaffold_36-1510915933:1503809..1504480 | TCONS_00061701-exon-scaffold_36-1510915933:1503809..1504480 | Clytia hemisphaerica | exon |
| TCONS_00061701-exon-scaffold_36-1491911889:1505071..1505288 | TCONS_00061701-exon-scaffold_36-1491911889:1505071..1505288 | Clytia hemisphaerica | exon |
| TCONS_00061701-exon-scaffold_36-1491911889:1503809..1504480 | TCONS_00061701-exon-scaffold_36-1491911889:1503809..1504480 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1503809..1505288 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006202 | Neur_chan_lig-bd |
| IPR006029 | Neurotrans-gated_channel_TM |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005230 | extracellular ligand-gated ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0005230 |
extracellular ligand-gated ion channel activity |
Blast
BLAST of TCONS_00061701 vs. Swiss-Prot (Human)
Match: CRFM7 (CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.342e-38 Identity = 69/165 (41.82%), Postives = 104/165 (63.03%), Query Frame = 2
Query: 2 LGSYSEHSEWTIENAYLKRNVLYYGCCPEPYPDVTAEFTLKRKPLFYVLNLLLPMIFIGVLTLLAFFLPAESGERISFAVTLMLALTVFMLIVADMIPANSEIVPMLGIFFTCVMIEMVLMVFAMCYTLNLHFKEPNAENRIGKWTRAIVYNRLAIYLGVRKRDE 496
+ Y + EW + KR+ +Y CC EPYPDVT T++R+ L+Y LNLL+P + I L LL F LPA+SGE+IS +T++L+LTVFML+VA+++PA S+ VP++ +F MI + L V L H +P+ ++ KWTR I+ N A +L +++ E
Sbjct: 97 ISGYIPNGEWDLVGIPGKRSERFYECCKEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDG-GKMPKWTRVILLNWCAWFLRMKRPGE 260
The following BLAST results are available for this feature:
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