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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061541 ID=TCONS_00061541|Name=TCONS_00061541|organism=Clytia hemisphaerica|type=transcript|length=1027bp
CGAAGTGTGTTCGTTTTTAACAAATATGAAAtctttatctttccaatgat
cCCATCCCGAAACATGATGAAACAGCCAATTTTGAGGTGAGATTGTTGTA
AAAATTTACTACTTACTTAGGTAACAGGACCTGAACCATTGATATACTGC
GAAAACTCTAATATCGAGAAAATCTAACGTTTCCTGGAGAGCTTGATCGA
CTATTTTGACTATTTTGAAACCAACATAGTGCCTATATTCAAGGTCCCTC
TGTTCACAATCAAAGAATAGAGAGACTTCATTATGACACAACACATTGTG
TTTTGAACCATTATATTACTTTGTTCCATTTTCTGGAAGAACAAGAACTA
TTAGACAGATGTAACAACATAGACATATATTGTATTCATAAGGTTTATTT
ACCAATGATTCAATCCTCTCTGGACCGGGTTTTCTGAAAGATGGAATAAA
TCAAGTGAAAGGAATAAATCACCCTATCAGATCTTCACAAAAGCTATGAT
GAATAAGAACAATCATCATCAAGCAGGAGTAGCCACATACTTAGATAACC
TAGAAGATGAGGATATTGAGATGTATGGTGTTGATTTAATGGCATCATCT
TTAGAGTACATGGATGATGAATTGGTTGAGATCGAAGATGTTGAAATGCC
AGATTCTGTGAAAGATGCAATTACAGAGATTAATCTAGAATGGGATGATG
GAAACTTTGGTATTGACATTTATCTTCCCTTGCTTGAAAACCAAAGTTTT
GAATCTTATTCTGAACAAATgagttcaaaagtttttttccagTGAATATG
ATGGACTTCCTGTTACTGACATGGTTTTCAGACTGCTTAGGGTTTGCAAA
CTTTGAAGTTTAGAAAGTTTTGTGATTCTTCGGAATTCTTTATATCAAAC
ATTACACATTTATTTTCTTGTGAGTACTCTTCTGTGCTTAGTATTTctaa
ttaaattgaaaatagtACCAACCTGTACAAATGTACAGAATACAAAATAT
AGATAATTTCACCGGCTTCAGTTCAGA Run BLAST on NCBI protein sequence of TCONS_00061541-protein >TCONS_00061541-protein ID=TCONS_00061541-protein|Name=TCONS_00061541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MMNKNNHHQAGVATYLDNLEDEDIEMYGVDLMASSLEYMDDELVEIEDVE
MPDSVKDAITEINLEWDDGNFGIDIYLPLLENQSFESYSEQMSSKVFFQ Run BLAST on NCBI transcript from alignment at scaffold_359:82848..83874 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061541 ID=TCONS_00061541|Name=TCONS_00061541|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at scaffold_359:82848..83874 (Clytia hemisphaerica)
TCTGAACTGAAGCCGGTGAAATTATCTATATTTTGTATTCTGTACATTTG
TACAGGTTGGTactattttcaatttaattagAAATACTAAGCACAGAAGA
GTACTCACAAGAAAATAAATGTGTAATGTTTGATATAAAGAATTCCGAAG
AATCACAAAACTTTCTAAACTTCAAAGTTTGCAAACCCTAAGCAGTCTGA
AAACCATGTCAGTAACAGGAAGTCCATCATATTCActggaaaaaaacttt
tgaactcATTTGTTCAGAATAAGATTCAAAACTTTGGTTTTCAAGCAAGG
GAAGATAAATGTCAATACCAAAGTTTCCATCATCCCATTCTAGATTAATC
TCTGTAATTGCATCTTTCACAGAATCTGGCATTTCAACATCTTCGATCTC
AACCAATTCATCATCCATGTACTCTAAAGATGATGCCATTAAATCAACAC
CATACATCTCAATATCCTCATCTTCTAGGTTATCTAAGTATGTGGCTACT
CCTGCTTGATGATGATTGTTCTTATTCATCATAGCTTTTGTGAAGATCTG
ATAGGGTGATTTATTCCTTTCACTTGATTTATTCCATCTTTCAGAAAACC
CGGTCCAGAGAGGATTGAATCATTGGTAAATAAACCTTATGAATACAATA
TATGTCTATGTTGTTACATCTGTCTAATAGTTCTTGTTCTTCCAGAAAAT
GGAACAAAGTAATATAATGGTTCAAAACACAATGTGTTGTGTCATAATGA
AGTCTCTCTATTCTTTGATTGTGAACAGAGGGACCTTGAATATAGGCACT
ATGTTGGTTTCAAAATAGTCAAAATAGTCGATCAAGCTCTCCAGGAAACG
TTAGATTTTCTCGATATTAGAGTTTTCGCAGTATATCAATGGTTCAGGTC
CTGTTACCTAAGTAAGTAGTAAATTTTTACAACAATCTCACCTCAAAATT
GGCTGTTTCATCATGTTTCGGGATGGgatcattggaaagataaagaTTTC
ATATTTGTTAAAAACGAACACACTTCG Coding sequence (CDS) from alignment at scaffold_359:82848..83874 >TCONS_00061541 ID=TCONS_00061541|Name=TCONS_00061541|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_359:82848..83874 (Clytia hemisphaerica)
TCActggaaaaaaacttttgaactcATTTGTTCAGAATAAGATTCAAAAC
TTTGGTTTTCAAGCAAGGGAAGATAAATGTCAATACCAAAGTTTCCATCA
TCCCATTCTAGATTAATCTCTGTAATTGCATCTTTCACAGAATCTGGCAT
TTCAACATCTTCGATCTCAACCAATTCATCATCCATGTACTCTAAAGATG
ATGCCATTAAATCAACACCATACATCTCAATATCCTCATCTTCTAGGTTA
TCTAAGTATGTGGCTACTCCTGCTTGATGATGATTGTTCTTATTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061541-exon-scaffold_359-1491911889:82848..83874 | TCONS_00061541-exon-scaffold_359-1491911889:82848..83874 | Clytia hemisphaerica | exon |
| TCONS_00061541-exon-scaffold_359-1510915933:82848..83874 | TCONS_00061541-exon-scaffold_359-1510915933:82848..83874 | Clytia hemisphaerica | exon |
| TCONS_00061541-exon-scaffold_359-1575043694:82848..83874 | TCONS_00061541-exon-scaffold_359-1575043694:82848..83874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_359 | supercontig | scaffold_359:82848..83874 . |
Blast
The following BLAST results are available for this feature:
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