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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061393 ID=TCONS_00061393|Name=TCONS_00061393|organism=Clytia hemisphaerica|type=transcript|length=1825bp
tagtaagaaaacaatagaattttaacgtaagaaccgtgtaggagcccatt
ttcaaatttcgatatctcaattttgtaaaattgttacagaaaaatacttt
gaggttttaATAAGGACCACAGAAGGTTTCTATAATCTAACCATCTGACT
ATCtctttaaattcattttcagaAGTAGGATTTCTAGCAGAGGGTCAATT
CTTAATATAAGACAGTAATAAATGTATTAaatgtgaagaaataagaatgt
ctgcccaactatattcactcaggaaATTTGTGTGGCAGgtatatgcattt
cgtccttattgggACTCATCAGCACTGCGTACTGCACCCTCACTGGCCGG
ATCGATTTAGCAAATCGATTTTATATTTCTAAAAACTCAGGTGACACAAT
ATGGCGTATtcgcaaaaaataataattaaaaaatacaaaaataatcatca
gtgattctaaaaatattgacatgaattatcaaaccaatcaaaattgTTGT
CTCTCTAAAGatataagaaaataataatcgacttcttttcaccaaaatag
tGATTTTTGGTAACTCCACCGTATTGCCAGTTTTCTGAATCGGGGAGGTG
CTCGTATACCACAAACTTTCCATTATTCTCAATACACTCGTCTCTTTGTT
TAGGATGCATTAAAAAAGATTTAGCATTTCTTAGTTCCTCTCTATTTGGA
TATTCCAAAATGAGAGCGTTAGAAAGGCCATTGCCATAGACAACGTTTCT
CCTTCTGGTAATAAGGTACAGATTATCATGTGCtccaactttttcttttc
tgataaaataaaaatttcttcctcCATGTTTCACTGACTTTTGTACTGCA
TTTTCCAACAATGCTGAAATAGCCGCATACCAATCCTTATACGAAGTGAA
AAGATTTGATCCTGTTTCTATACCAAGAAAGTACTTATTAGCACCCCACC
AGAGCAGTTTATCTTCTTTAGTAGCGGCTGATGGCAACTGCTGCACAATT
GGCAAATTTTCAGGCAGCGGATCTTTCTTTAACTCATTTGAATTATTGGC
TTCCATCGATTCAATTTTGTGACGAAGAGCCTGTGTTACcaattcttttt
ctctttccatCTGCCCTACTTTAATCTTGTTGTTGTTCTCTAAGTCCTTC
ATTTTCAATGCAAACTCATTTTCCTTGGCAGCCATTTTGGTTTggtgttc
attttccttggcAGCAATTTTGGTTTGGTATTCATGCTCTTTCGCCAAAA
ATGCTTTCTCCATTTCATTGATTTTCGTCTTgcattcattttccttgttg
GCAATTTCCTTGTCTTTTTCGGCAAGCTTGTTCTGGAACTCATTCTGTTG
TTTCAGCATTTCTTGATTGATCACACCTTTGTGTAAGTCCAACTCATTTG
TTTTCTTCAACTCTATGAGTTCCAGGTCCTTTTCAAGCtgcaaaatcttc
attttttgttcTTTGTCTTGGTTGGATATTTCTTTTTCCAATTCAAGAAT
TTTGATACGATTTTCAAATGTCAATTTTTGAATCTGCTTATCATGGTCTT
CCTTAAGTTTCGCAATCTCAACGACGCTATTGTCAACATTTCTACCAGCA
GCACTGTGTGCCAAATTGCGATCGTCAAAGTGTGCAGAAtccatttttat
ttcttttttgatcTACATGATAAAATAGTCATTAGCTTCAAAATATCAAT
TTCTTGAAAACGACAAAGAACAATACTTTTGGAAATAGACAGCCCTACCA
GTAGCTTCTagtcataaaaaaatcacaagacAGTTCAGGCAGAAGTAGTC
CATAATAGTAATCTATAAAGTAGCC Run BLAST on NCBI transcript from alignment at scaffold_358:380049..381873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061393 ID=TCONS_00061393|Name=TCONS_00061393|organism=Clytia hemisphaerica|type=transcript|length=1825bp|location=Sequence derived from alignment at scaffold_358:380049..381873+ (Clytia hemisphaerica)
tagtaagaaaacaatagaattttaacgtaagaaccgtgtaggagcccatt
ttcaaatttcgatatctcaattttgtaaaattgttacagaaaaatacttt
gaggttttaATAAGGACCACAGAAGGTTTCTATAATCTAACCATCTGACT
ATCtctttaaattcattttcagaAGTAGGATTTCTAGCAGAGGGTCAATT
CTTAATATAAGACAGTAATAAATGTATTAaatgtgaagaaataagaatgt
ctgcccaactatattcactcaggaaATTTGTGTGGCAGgtatatgcattt
cgtccttattgggACTCATCAGCACTGCGTACTGCACCCTCACTGGCCGG
ATCGATTTAGCAAATCGATTTTATATTTCTAAAAACTCAGGTGACACAAT
ATGGCGTATtcgcaaaaaataataattaaaaaatacaaaaataatcatca
gtgattctaaaaatattgacatgaattatcaaaccaatcaaaattgTTGT
CTCTCTAAAGatataagaaaataataatcgacttcttttcaccaaaatag
tGATTTTTGGTAACTCCACCGTATTGCCAGTTTTCTGAATCGGGGAGGTG
CTCGTATACCACAAACTTTCCATTATTCTCAATACACTCGTCTCTTTGTT
TAGGATGCATTAAAAAAGATTTAGCATTTCTTAGTTCCTCTCTATTTGGA
TATTCCAAAATGAGAGCGTTAGAAAGGCCATTGCCATAGACAACGTTTCT
CCTTCTGGTAATAAGGTACAGATTATCATGTGCtccaactttttcttttc
tgataaaataaaaatttcttcctcCATGTTTCACTGACTTTTGTACTGCA
TTTTCCAACAATGCTGAAATAGCCGCATACCAATCCTTATACGAAGTGAA
AAGATTTGATCCTGTTTCTATACCAAGAAAGTACTTATTAGCACCCCACC
AGAGCAGTTTATCTTCTTTAGTAGCGGCTGATGGCAACTGCTGCACAATT
GGCAAATTTTCAGGCAGCGGATCTTTCTTTAACTCATTTGAATTATTGGC
TTCCATCGATTCAATTTTGTGACGAAGAGCCTGTGTTACcaattcttttt
ctctttccatCTGCCCTACTTTAATCTTGTTGTTGTTCTCTAAGTCCTTC
ATTTTCAATGCAAACTCATTTTCCTTGGCAGCCATTTTGGTTTggtgttc
attttccttggcAGCAATTTTGGTTTGGTATTCATGCTCTTTCGCCAAAA
ATGCTTTCTCCATTTCATTGATTTTCGTCTTgcattcattttccttgttg
GCAATTTCCTTGTCTTTTTCGGCAAGCTTGTTCTGGAACTCATTCTGTTG
TTTCAGCATTTCTTGATTGATCACACCTTTGTGTAAGTCCAACTCATTTG
TTTTCTTCAACTCTATGAGTTCCAGGTCCTTTTCAAGCtgcaaaatcttc
attttttgttcTTTGTCTTGGTTGGATATTTCTTTTTCCAATTCAAGAAT
TTTGATACGATTTTCAAATGTCAATTTTTGAATCTGCTTATCATGGTCTT
CCTTAAGTTTCGCAATCTCAACGACGCTATTGTCAACATTTCTACCAGCA
GCACTGTGTGCCAAATTGCGATCGTCAAAGTGTGCAGAAtccatttttat
ttcttttttgatcTACATGATAAAATAGTCATTAGCTTCAAAATATCAAT
TTCTTGAAAACGACAAAGAACAATACTTTTGGAAATAGACAGCCCTACCA
GTAGCTTCTagtcataaaaaaatcacaagacAGTTCAGGCAGAAGTAGTC
CATAATAGTAATCTATAAAGTAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061393-exon-scaffold_358-1491911889:380049..381873 | TCONS_00061393-exon-scaffold_358-1491911889:380049..381873 | Clytia hemisphaerica | exon |
| TCONS_00061393-exon-scaffold_358-1510915933:380049..381873 | TCONS_00061393-exon-scaffold_358-1510915933:380049..381873 | Clytia hemisphaerica | exon |
| TCONS_00061393-exon-scaffold_358-1575043694:380049..381873 | TCONS_00061393-exon-scaffold_358-1575043694:380049..381873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_358 | supercontig | scaffold_358:380049..381873 + |
Blast
The following BLAST results are available for this feature:
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