TCONS_00061380 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00061380
Unique Name	TCONS_00061380
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1163

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_358:141428..146837+

transcript sequence

>TCONS_00061380 ID=TCONS_00061380|Name=TCONS_00061380|organism=Clytia hemisphaerica|type=transcript|length=1163bp
ATGGAGCTTGGTGAAACCGAACCTATCCCTGAAAGTCATTGTCAAAGATA
TGTTTCTCACAAATGTGTGGAGCTGATGAGTGAGAAGTTTTTGATATCAC
CCTGTCTCACTCTACTGTCAAAGGGATTGCAAAAAAACAAGTCACTTCGC
TCACAACTACTTATCGATATATGCCATATCTCTCATCACATGCTATACAC
ACTGAATACGCCAGTACAGAAGTCTGAGTTCCTTTACTCGCTGGCTTTCT
CTAAATACTTTCTGCGATTGACGTGGTATGAATTGCTTGCATTGGAAACC
TATACGAATACTGGGAAAACGGTCCAACTCTTGCACCAATTAGCTCACGG
GAATGCGATGACGTCACAAGATGAGCAACGCGTCATACCGATGTTGAGTG
TCTACACAACGCTCCTTCGTTACGCAATGTTTTCCATCTATGATACCGAT
TTCTACAGTGACAATACGAAATCAACACTGATGCCGTTCCGCATTACGGA
AGTCATTGAAATGTCCCGTATCTTACGTGACGTGGTGCTAGGCTTGATTG
TCTTCATGTATCCGGACATCAAAATGATCACCACATCGGCTCAACAAAAA
CAATGGCATACGCTGTGCAGGAGTGTTACTTTACTCGTGAAACAACTGTA
CGCGCGTGATTCTCGGCGTCGCTTTTGTCCCGAACACCATTGGCTATCTA
ACCGAGCGGCAATTAGTCacgaaacaatgaaaatcaatttctttGTGGAC
AATGATGACGATGAAATGGATGTTGAAAGTGATTTCTCGAAAGACCATCT
TTTCAAACCTGGCCTTTCAACGTTAAATGCACGTAACGTCGCTATTTTGG
AATACGTCCCATTTGCAGTACCGTTTCTACAACGCGTTCTTATATTCCAA
CGTATCATACAAGAGGATaagaaaaacaaccaaacaCCTGAACAAGCATT
TATTTCGGGTGGTGGAGTCGAAAGTCTTACAATTAACCGAAAATACCTGT
ACCAAGACGCTTTTGATCAATTATCAAAGGAACGCCGTGCGGACATCAAG
CAAGTAGTTCGCGTGCAAATGATCAACGCGCAAGGCTTAGATGAAGCTGG
GATAGATGGGGGTGGTGTATTCAGGGAGTTTATGTCGCAATTCATCAAAG
AAGCTTACGATCC

Run BLAST on NCBI

transcript from alignment at scaffold_358:141428..146837+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00061380 ID=TCONS_00061380|Name=TCONS_00061380|organism=Clytia hemisphaerica|type=transcript|length=5410bp|location=Sequence derived from alignment at scaffold_358:141428..146837+ (Clytia hemisphaerica)
ATGGAGCTTGGTGAAACCGAACCTATCGTATGTTTTCGTATAACTTATCG
GTATAAAATCATCGGAAAAAAGTGACGACATTttttaccgacgaattttc
ttcgtcgACAATTATTTTTGACCGACAATTTAAATTGGCCGGCAGACCAT
AATTATTGCAGTACACGCCTCGACCCGAAGAATATATTTTCAGCATTACA
TCATCTAATGTCTAAAttgtaaaagttattttcgTTTTGTTTGATGCCTT
TCTAAAATCATAGCGTTATTCCGGAAAAACGTAAACCACGATTGGAGATT
GTACCGACTCTTTGACTGCTATTAAATGATAGGCGTTATTGATAGTATCC
AGTCAAAAATATAGCAAATATACCTCGAATAACTGCATATTTATCCTCAC
AATATTTTGATCTTTTAGCCTGAAAGTCATTGTCAAAGATATGTTTCTCA
CAAATGTGTGGAGCTGATGAGTGAGAAGTTTTTGATATCACCCTGTCTCA
CTCTACTGTCAAAGTAAGTGCAcgtaacattttcaaatttgaattctAGA
GGAGGTTCTAGCTGTAGGTTTCTCGTAAACTACATACAGGGAGATGGAGC
CAAACCTTAGTGCCAGtagcgtagataagaatggcGTAAAACTTTATTAG
GAGAACAGCtctttatgacacagtaattgtgtgccataaaaatctgctct
cctacacaaatttcgCGCCCTCTTCTCTACACTATTAGTAACCTGAACCT
ACCCTAAACTTAATGAACCGGATACTGATATACCTGACCGCGACTCCTAG
TGGCAGTTTAGTTTGTCTCGCCTGCAGTCGGGCAAGGATAATGAGGTTTT
TAACCAAATCAAAGTAAGCCAAAAAGGAATTTATGGAATCAACTCCCAGA
AATAAAATACTCCAAGGCTTTCGAATTAAAGGAGAAATTTacttaaaaaa
tcttcttttatcTTCTAGGGGATTGCAAAAAAACAAGTCACTTCGCTCAC
AACTACTTATCGATATATGCCATATCTCTCATCACATGCTATACACACTG
AATACGCCAGTACAGAAGTCTGAGTTCCTTTACTCGCTGGCTTTCTCTAA
ATACTTTCTGCGATTGACGTGGTATGAATTGCTTGCATTGGAAACCTATA
CGAATACTGGGTAAGTGAGGTGTATTTTGTAAAGGTCTTATATTGAACAA
TACTACCTGTCCCTATCCCACTGTCCCTATCCCACTAAAGCGCTTTTTAG
GTTTGTCGGTCTCTCACGTTTTACCACTGATTTTTATATACCTTGGACAA
AGATATTTTCGCCATCTATGatcgaatttttttataaaagtagTACCCTA
ATGATAGCACTACTCGGTGTGGGTCAATTTATAATTCAATGAAATTGTTC
GTTTAAAAGTCTTTTATCCTCACTGAGTAGTGCTACCGTTCGGGCACCAG
TTTCAAAAAGTGGTTCTTTTCTTGGCCGGAATCGGGAAACTGTGTCCATC
GAGTCCAAACTTTtagtaaattttttatttttttattttacgacAACAGG
AAAACGGTCCAACTCTTGCACCAATTAGCTCACGGGAATGCGATGACGTC
ACAAGATGAGCAACGCGTCATACCGATGTTGAGTGTCTACACAACGCTCC
TTCGTTACGCAATGTTTTCCATCTATGATACCGATTTCTACAGTGGTAGG
ATAATTGTGTTTACgctttctttattaaaagattATCTTTAAAATCGAAT
TAATGATCTTCAGCGGTATTATTTTACTTTGAGTTATTTCCTTGTCTGTC
ACTCTCCAAATTTTGGACTGACTTTCGAGCTGATTGTTGTTTTTACCTGG
ATTGACATCTTCTTACCACCAAACACAAAATACTAGTTCAATCTTCATAA
AAGTTTCTTTATCGATTGTAATTTTATTGACAGCTTATTTAAAAATGACT
CTTTACCgcattttaattcaaaattgaaatatatttatccatttttccaa
tttaatTGTTAGACAATACGAAATCAACACTGATGCCGTTCCGCATTACG
GAAGTCATTGAAATGTCCCGTATCTTACGTGACGTGGTGCTAGGCTTGAT
TGTCTTCATGTATCCGGACATCAAAATGATCACCACATCGGCTCAACAAA
AACAATGGCATACGCTGTGCAGGGTAAGAAATTAATACTTGTTTTTTCCT
AATTATTCATCGCAGTTGGCACTCTCTAATTCGCCGTTCTAAAtcctatt
tcaaattagctggcagtgtttttttcgaacctcaataacttttgatagaa
tttgaattaagtagcggtttgtgcttgttgaaaagataatctggagtgga
atattatcaaaaaagaaaaaaattcaaaaaatggaaaaacgaagatgaaa
aatgaaaaagaagaaaatcaacttcttgtagaataatgctacgatcttta
tttttgtatcagaaattcttcaatcttagaacatcatgaatgcgaaaaaa
tattgaaaaaatattcattcaatcaaaaaatacatCCTCAAACGTTGCCC
TGGTTGACTTAAAAAGgactcttttttgttgttttttgatgatttttgat
atcaatcattgataaactttggactatatctttcgatggaataaattttt
ttgagaatttttttcacattaatgatgttctaagatcaaagaatcactcg
tgtgaaaataataattatagcacaattattaaagaagttgatttttttct
tcttcattttcaatcttcatatcattttccaatttttttgagtttattCT
TTATGGCAATAtcccactcctgtttgtctttttaatagactttaatattc
gataagctccattattcgataatattgaaagtcgccgtcaacaagaaact
ctctcAAGCGACGCGCTCTTCCATTCGActcatttttgataaaaatccaa
TGCCCGCTGAAAACCGAATTTGAGAGCGTATTTTCGTGAATAAGCGCTCT
TTGAACTTTCAAGGCTGCGAAGAACGAGAACGAAGTCtcttttggtttat
tttttttacgAGAAAAGCCAGACAAGATGGCTAAGTTTTCTCCTTTaatg
tatttcaaatttttgagtaAGCATATTTTATCGTGTTATTTTCGCGGTCC
TTGTTACGGGACAAGCCAATCTGGACCGATACAATACTTGAGTTACGGCC
AATCCATGACTGTCAATctcgaaaaaaatttattaactCTCTTTTTTAGA
GTGTTACTTTACTCGTGAAACAACTGTACGCGCGTGATTCTCGGCGTCGC
TTTTGTCCCGAACACCATTGGCTATCTAACCGAGCGGCAATTAGTCacga
aacaatgaaaatcaatttctttGTGGACAATGATGACGATGAAATGGATG
TTGAAAGTGATTTCTCGAAAGACCATCTTTTCAAACCTGGCCTTTCAACG
TTAAATGCACGTAACGTCGCTATTTTGGAATACGTCCCATTTGCAGTACC
GTTTCTACAACGCGTTCTTGTAAGTAGTGTTATTATTTTAATTCGCTCCC
CCCTTCTTCTCTTATTCGATATTCTAGTGATTAAGAAATTTTCTTCGAGT
GTTACACGAAGTAGGCTGAAAATAAAGTTCAAATTACTAAAGATTTGAGT
TGTAGATGTTCAGAGAGAGTTGGTTGTTTGCTCTACAACGGCTCCACAAT
TGTCTTGAGAAATTTCTATACGCCTTTCAACCTTTAACGGCGTGATCAGC
TTTTGAGGGGACTGGTAAtaaatttacaaagaaaatattttctcagAAAT
CTCTTAAAACCTGTATTTCTataattgggctattccaaaaatagtctgta
ccccctatattgaggaggtgtgacgtccagtgtggatttgaaaataaaaa
atccagggcgATCTGGTTTCtcgagtgtaaaaatccaggtTGTATAGTTA
AAATGAAGTGGAAACGGGTCAGTAAAACGGGGTCAAAATCCAGGTTGGTc
caaaaaatacgaaaaaaataCTAGGGAAGGAGGtcttgaaaaattgataa
aaaaacccaggggtcacctttcccaaaaaagacctcctcaacataagGGT
AAAAtcattttctggaatagcccatttgaACTGATTCTCGGTTCTCTTCA
AGAGAAAACCGTTGAAGAATTTTATATTATCGTCTTAAAGTATATCTATT
CATGAGTCTGTTTACTTATTCTGCAAAAACATTCCACAACTCCATTAAAA
ACGACAACTCATTTCAATTCTTATTCGACACTGTCCAGTCAAAACATTGT
AAACtctctggtcattaaaatgttatattaaaGTGAAGAAACTACTGAGG
TTAAGGAttccaggataatcacgacgacggacgaaaaaggtaataggcta
gtgaaaatacgaaatttgattggttgaaactcactagcctgttaaatttt
cgttcgccGTCGTGCgctatcttttgttttgatgattggttgaataaCTG
CAATCTTTATGCAAGCTCCGCGTTTTTGaagcagcgattcagacctcGGA
AAACATAATGTCTCTAATGTTTTCCTGTTTTAACAACAGATATTCCAACG
TATCATACAAGAGGATaagaaaaacaaccaaacaCCTGAACAAGCATTTA
TTTCGGGTGGTGGAGTCGAAAGTCTTACAATTAACCGAAAATACCTGTAC
CAAGACGCTTTTGATCAATTATCAAAGGAACGCCGTGCGGACATCAAGCA
AGTAGTTCGCGTGCAAATGATCAACGCGCAAGGCTTAGATGAAGCTGGGA
TAGATGGGGGTGGTGTATTCAGGTTAGTTGCTTTCATTTCATCATcgatt
tacaaaaataattaaattctATGCTTGGTTCCAATCCGAAATAGCATTTT
GTTCTTTATTGTTCTTTATTGCTATGACTCATCAATAAAGCATATCCCTT
AGAACCATTCCCCTTTTAAAGATTACCTTAAAATGGAACAAATTTTTGCC
cgaaaagaaaacttgaaaaagtAGGAATAAggattttttcatgatttttg
tggGCGAAATTGAGCGGAGAGTTGATTTTGGCGAGAATTGATTAAAATGG
TCTCTTATCCCTTTCCCTCTTTTACCTAGGTGCAGCTAATTATTGAGTTG
ACGCAAGAACTAAGACTTTTTTCTAATAATCTTGTCCtaaccccggctcg
aaccaccaaagtAGTCTTATCAGTGATTCGAAACCCGACTTGCAAACCAC
TAGGCTACCGAGCTGCTGAAAATAACGGTGCGCCACCCGTGCGTGCCCGC
TCGCTCTATATGAGCGCTGCACGCAATACTTGCGTTAACTCAGAATTTGG
GGTTCTCTTTTACCTCAACAGGGAGTTTATGTCGCAATTCATCAAAGAAG
CTTACGATCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_038514	XLOC_038514	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_358	supercontig	scaffold_358:141428..146837 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.308706	0	0	0	7.35309e-09	0	0	0	1.04804	0.172428	0.392396	0	0	0	0	1.86198	3.74671e-10	1.19448	0	2.19412	4.8409e-06	0	0	0	0	0	1.08997	1.96224	0	0

Blast

[Close]

BLAST of TCONS_00061380 vs. Swiss-Prot (Human)
Match: UBE3C (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 6.821e-69
Identity = 138/409 (33.74%), Postives = 222/409 (54.28%), Query Frame = 1

Query:   49 YVSHKCVELMSEKFLISPCLTLLSKGLQKNKSLRSQLLIDICH---ISHHMLYTLNTPVQKSEFLYSLAFSKYFLRLTWYELLALETYTNTGKTVQLLHQLAHGNAMTSQDEQRVIPMLSVYTTLLRYAMFSIYDTDFYSD------NTKSTLMPFRITEVIEMSRILRDVVLGLIVFMYPDIK--------------MITTSA--------QQKQWHTLCRSVTLLVKQLYARDSRRRFCPEHHWLSNRAAISHETMKIXXXXXX-------XXXXXXXXXXXXKDHLFKPGLSTLNARNVAILEYVPFAVPFLQRVLIFQRIIQEDKKNNQTPEQAFISGGGVESLTINRKYLYQDAFDQLSKERRADIKQVVRVQMINAQGLDEAGIDGGGVFREFMSQFIKEAYD 1161
            Y++ +C++ +  K   +  L L+ +     +   +  +  +CH   + H M+      V K   LYSLAF+  FLR  W+ + ++ T   TG  V LL  ++ G+ M+ +D  R+IP+  ++++L  +++ SI+D +F+ D        +S++MPF + E+I +SR LRD  LG+I   YP+ K               +TTS+        +QK+W  L + +T LVK L +RD+RR FCP +HWLS +  I  + +   +   +           +          L  P LS    R +A+L  +PF VPF +RV IFQR+I  DK+  Q  +  F+ G  V   TI R Y+Y+DA+D+LS E   D+K+ +RV ++NA GLDEAGIDGGG+FREF+++ +K  ++
Sbjct:  390 YITEECLKKLDTKQQTNTLLNLVWRDSASEEVFTT--MASVCHTLMVQHRMM------VPKVRLLYSLAFNARFLRHLWFLISSMSTRMITGSMVPLLQVISRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQSSMMPFTLEELIMLSRCLRDACLGIIKLAYPETKPEVREEYITAFQSIGVTTSSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLDVGLESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQG-DGPFLDGINV---TIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFN 786

The following BLAST results are available for this feature:

BLAST of TCONS_00061380 vs. Swiss-Prot (Human)

BLAST of TCONS_00061380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UBE3C	6.821e-69	33.74	Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB...	[more]

You are here

TCONS_00061380 (transcript) - C. hemisphaerica