TCONS_00061294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061294
Unique NameTCONS_00061294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061294 ID=TCONS_00061294|Name=TCONS_00061294|organism=Clytia hemisphaerica|type=transcript|length=1643bp
GGGTCATTAATTGAAACTGAAAACTTGAAAAGAACAGATTTCATAACTCA
CAAAATCAACAATGGATAGTTCAACCGATGAAAGCAAGAGACTTTCAATC
AAAGTTTGGATTCTCTCATGCTTGTTTGGTATCGGCTCATGGGTTGTGAT
GAATGGTCTATGGGTTGAGCTACCAAACCTTGTCAATCAATTACCTGAAG
GCTGGAAATTACCTTCTTACTTAACAATAATCGTGCAGATTGCTAATATT
GGACCAATAAGCTATGGTTTACTCAAGAAATATTGTGTTAAACCAGAGCG
GAAAGAAACTCTTGAGCATATCACAATATGccttattttggtttttggaa
TAATAGGTGCCATCCTGTTAGCTTGTTACTggaaaaaaacttcaaacatt
TTTGGTGCTGAACATAGCACCTCTCTACTTTTATTAACATTTGTTATAGC
TCTCGTTGACTGCACTTCATCTGTTACTTTTTTACCCTTCATGTCcttgt
taccagctttttacATGAGTCCTTTTTATGTTGGCGAAAACATGAGTTCC
CTTGTTGCTGCTATATTTGGATTAGCACAAGGTGTGGAAGTTTACAATGG
TACTCTACCAAACGGACAGGGTAGAGAATTGTTGACACCAGTGAGATATT
CACAAAGTACATTTTTCTTAATTCTTGGTGTATTAATGATCCTTTGTTTT
GCTTCATACTTGATTCTACGCCTATTCCCTTCAATTAAACAATTGCATAT
CAACAGTGATGAAGTTCAAGTTTCAACACATTATGACCGGTTCCATACTT
CAGTCTCTAGTGAATTCCAGGGCGATTCTTCAGATAACTACTTGGTCATT
GGTGATACTGGTCATGATAGAAAGTTGATACAAGTCTGTTTTTGTTGTAT
GACATGGTTGAATGTCTTACAGAACGGTGTTATGGCATCTGTCGGCTCGT
ATGCTTATGGACCTTATGGGGAATTATCCTACCATTTTGCGTCCACTCTT
GGTCCCATCGTTGCTTCGATAAGTTGTTTCCTCTTCATGTTCTTCCCAAG
AAAATCAATACATTACGTCATTGGTGGATCTGTTGGTTACACTTTAGCTG
TTATTTATTTACTCATAATGGCAACACTGAGCCCATACCCCTTACTGTAT
GACAAAACATTTGGTAAAATTCTAATCGTCGTAGTGTGTATGGTGGCATC
GTCCCTTGTGGCTTACACCAAGTTAGCTATTGCATCTGTTATGAGAGATT
TTGGTCACCAATACTTATTTTATACTGGGATTACAATGCAACTTGGTTCG
TTTATTGGTGCTGTTGTTATGTTCCCAATTGTCAATTATGCCAAAGTATT
CAAATCATAATGGAATTAAAATGGAAAGTTGTTTCTTCTTATTAGTAAtt
gtttgttctttattttaacTATGGTATTGGATTCTTGAAGTGTTTTGATA
ATGGTCCCAATCCTTTGTtaatataccttaagggaacttattttggaggg
aactaattttgacaagCGCCAAAAATcctgaagatttttaattttggcgg
gaactaattttggcaaatgacagcctaaatctgttctattttgtcttatt
taaagctttttttgtgaactcaAGAAGTTACTTAGGCTTAgta
Run BLAST on NCBI

protein sequence of TCONS_00061294-protein

>TCONS_00061294-protein ID=TCONS_00061294-protein|Name=TCONS_00061294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MDSSTDESKRLSIKVWILSCLFGIGSWVVMNGLWVELPNLVNQLPEGWKL
PSYLTIIVQIANIGPISYGLLKKYCVKPERKETLEHITICLILVFGIIGA
ILLACYWKKTSNIFGAEHSTSLLLLTFVIALVDCTSSVTFLPFMSLLPAF
YMSPFYVGENMSSLVAAIFGLAQGVEVYNGTLPNGQGRELLTPVRYSQST
FFLILGVLMILCFASYLILRLFPSIKQLHINSDEVQVSTHYDRFHTSVSS
EFQGDSSDNYLVIGDTGHDRKLIQVCFCCMTWLNVLQNGVMASVGSYAYG
PYGELSYHFASTLGPIVASISCFLFMFFPRKSIHYVIGGSVGYTLAVIYL
LIMATLSPYPLLYDKTFGKILIVVVCMVASSLVAYTKLAIASVMRDFGHQ
YLFYTGITMQLGSFIGAVVMFPIVNYAKVFKS
Run BLAST on NCBI

transcript from alignment at scaffold_355:119362..126164-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061294 ID=TCONS_00061294|Name=TCONS_00061294|organism=Clytia hemisphaerica|type=transcript|length=6803bp|location=Sequence derived from alignment at scaffold_355:119362..126164- (Clytia hemisphaerica)
GGGTCATTAATTGAAACTGAAAACTTGAAAAGGTATCTACCATTTTTAAT
ATCAAAGATTTGGGCACTTTTTAAACAACAGCCATTCCACCGGAGAGGGC
TAGCTATACTCTCTAGTATCATCTTCATTTGGATTGAGTTTTTATTTCAC
ATATATACCAACGTTTAGATTCCCTTTGACTTTTTGCTAAATTTCCCTCT
GCTTAGGAATTAAAATTTTTTTTAAATTAAAAACCCCCAAAAAATTGTAA
ATATACCGTCTAAATCTGACACCACTGCCTAATTCCGACCCCCCAAATAA
CTGTTATGAAAAAAATTCTATATTTACAAACATTCCCTCTCCAAGTTGAA
CGATAAACTATTGCTAGAACTCTCGACACAAAACATCTAACAAGATAGCT
GTAATATCAAGATGTAAATTAATGTAATTAAAAAGTGTGAGTTGTAAATT
GAATTGAATTGAATTGAATTGAATATATTTTCGCTGCAACACAGCAGGAT
AACCCCTTACAAAAAAAAAAAAAGATTTCTCTAATACAATGGGGAACCTA
GAAGAAACTGAGAAATTATTGCAGAACTAAGGGGACCCGTCCATATTCAT
TTGACAACGCAAAACGTCAAATTGACGTTATCCTCTGAACCCCCCACCCC
CCACAGATAACGTCAAGCGATGTACTGATATATACCAAAAGTTGTACAGT
AGCCATTTTTCACCAAAGTTTTCCCGTTCCGTCGCAAATTCCATACTTGG
TTGTACCCGTGCGTGTATGTGTTCTTTTAATTAATGACTTTTATTTAAAA
ATAAATTAAAAGCTCCACTTGGCGCTAGGTCGGTGCCGTGCTTTAGGCGT
ACCACCTTCTTTGCCCACTTGTGCGATGTGGTTTGCTCGATCGCGCAAAC
AATGAAAATATGATGTAATGATATCATAGCGCAAACCAATGGGATTATGC
GAGCAGCAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNTACACGAATAT
GTTTTCGAAAGCTTATAAAGTATAGTGTGGTTGGTGGTTACAAATATCCG
CGATTTTCACAAAAAGGTATACCTTTGATTTCTTATACCGTCAAACCTAA
CTTTTGAAAACCCCCCACCCCCTCATAACGTCAATTTGACGTTTTGCGTT
GTCAAATGAATATGGACGGCTCCCCTAAAGAAAAAATGAATAAATGATTA
TCATAATATTAATAGTGACAACAAAATAGTGAATATAAGAAACATTTTTA
CTTTTATTTTATGACAATTTCTTTGAGTAGATTTATCTATAAAGTTCTTC
CTGTTACACCACCCACCCCTCCCACCCTGGGAAAACACACTAAGTTCACG
CACACACAATACACGCACACACAGACTCACACACACACAAAGATTTAAGA
AAAAATAATTACCTTTTATTCTGGATCAGTTGCTCATGTTTAAAACGATA
ACAGTTTTGTAATAAAAGTGACTTGTGCGGGAAAAATACGAAACAACTTA
GGCTGGTTTCCATCAAGAAACAAACAGATTAAATTGCAAAAATGGCGCGA
AGTTGAAAAAAGGGCGGATGCGGTAGCACTTGATTTGAATAAAAAACATT
GAATCAATGAGGCGGCAACTATCAACGCCCTCTTTACCACCCATAAGTCC
GGATGTTTATTTACGGAAACCCCGCAATCAAGCCAAGTGCCAGTGTAAAG
TAATAAAAACCAGGCTTGATTACGTAACGTTTTAAAATGAGCGCGCTCGT
ACACAGACCTCTTTTATATTTTCGTGTGCTTTGAAAGTAATAAAAACCAG
GCTTGATTACTGTATGTAACGTTTCAAAATGAGCACGCTCGTACACAGAC
CTCTTTTATATTTTCGTGTGCTTTGGAAAATCAAAACATCTCTAACAACT
ACTGTTGTCATTTATGACGTTGTGCATATTGCAATAAAAAAATATGTTTT
GTTATAAGAAGCAATTATTGTTATTTGGTTCAATTGGTTCAGTGTATCAA
ATCTCTCAGTTTAGTTGACACTTTGGTATCTTCGTTGCGTCACAGCGAAA
GGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCGGATTTAG
GCAGTGGTGTCGGATTTAGGACCTCTCACAGTACTATACATGATTAACAA
AAATATTCTTCAATTTTTTCGATTTTATCGGTTTGAGTTATTTATTTATC
ATTACTTTTCTTTTTCTACAATGACAGATATTACTAATCTTTACTATATA
TTAAATGATCTCTATGCACAAGTGTTACGCGTAAGCCAAATCGCGTAATA
CGAACAACCTCTAAATTGCTGAGTACAGGAGAAAAAAAATCAGCCGCGGC
CAAGCCCACGCTGATAACTATCAAAAATCTTCGTTTTTCAATCAGCTATT
GCAGCTCAAATAATCAATGAAATAATTTGAAATAAAAAGTAAACAAACCT
GGAACCTTTCATGAATTCAAAAAGAATAAAAGTATTCATCTAAAGTGAAG
ATTACATTTCAAAATAAAACGATTTCCAAACCAACCTAAAGTCAGTGTCT
GCCAACTAAAAATTTCTCTGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACGGGGTTTTGTTT
TTAAAAACAAACTTCAAAATAAAATTGTTAATGAACTTGTTACTTAAAAT
ATCACTTACTTACATAATTTATTTATGATATACACCCCTTTCTTAAATAA
ATGGCCTCTTAGATTCTTTTATGTTTGCCGCAAGAAGGGAGAAAAATTTC
ATTTAACCCCCGGTTTTTCTCTCTTTTTCTATCTATTTCCCGCGTGTTAG
TATAGACACAACTTTAATTCAGGGAAATGAAGCGTTTTCATTGGTCTAAA
ATCATGAATGGTCACGTGACCAGAATTTTTATCCAGGGAAATGCCGTGGC
GGCAATGTTTTGCTTTAGTGAGATTGACCATTTTGTTGTTTTGATTTGAG
CGGGCAAAATTTCTGTACAAACCAAAATATGGCTTCGTTGGAATACCGGT
TGAAACACTTGTGTATGACTGAGTCTGGGACTTCAGGTTTGAGTTGTTTA
TGCTTGTATGCCTTTTGATATGTTTGTTATTTGTGTAAATTTTTTTGTAC
TTGTCCCCATTTTGTATGTATTTTGATGAACGTGCAAAGGATTGTACGGA
AGTGTGTTTATCAGAAATTATTGCAATTAATTGTTTCTCCACTGTTACTT
TTTTTCTTTTATCACCTTCATTTGGATTAGGTTTTTCTTTCACAATCCAA
TGTTTAAATTCCCTTTTACTTTTTTTCTAAATTTCTCTCTGTTTTGGAAT
GATTTAAAAATTAAAATGCCAAAAAAATGGTAAATAAACATAATTAACGA
AAATATTTGTCACTTTTTTCGTTTTTATCTGTTTGAGCTATTTATATATC
TATACTTTTCTCATTTCACAATGACAGATATTACATATCTTCACTACTGT
ATAGCAAGCAAAAGGATGTGCTGCAAAACTTCTAGAAGAGGGTTTTATGA
AAAAATAAAGCAGTGGTTTTCAATGAAATTAACATTTTTGAATAACTTTG
AGGAATTATCTAAATTTTGAGCCATAAATGTAAAGATTTGACCAAATTCA
AACTTGTCCCAGTGTATCCTAGGCTTTATTCACATTACTTATGGATGCCA
GAGAATACCTTTTGGTGTAGATTACCCAAAACAATACGCCATAAAAAATC
TGACGTTACAAAGATGAACTGCAATACAATGGTTTCAAAATCATACAACA
AATAAAATCTGACATTTTGTTATTGAATTCGTAACCTTACACGTTTGAAA
ATCAGACAACTGACGTTATCAGTAATCATAAAAAAACTGATAAAACGCAG
GGAACAAGGTTGACTCAAATTAATATAATAAACAACTTCTCAAAAAAAGA
TCCAGGGGGTGAGAAGACAACCACCTAGATCTGTGCACCATGGGTAGGCT
ATTTCCTAAAAATTCTAACAGACCTCATACATTGACAAATTACACACCAG
GAATTTATTTTTATTTTAGCGTGTAATCAAGGCCTAATAAATTGAGGTAG
TTAGGGAACGTTTTTCTTCCTATTTATTAGCTACAAGTAAATCAATAAAT
AATAGAAAATACCTTATTGTCTTTAGAACAGATTTCATAACTCACAAAAT
CAACAATGGATAGTTCAACCGATGAAAGCAAGAGACTTTCAATCAAAGTT
TGGATTCTCTCATGCTTGTTTGGTATCGGCTCATGGGTTGTGATGAATGG
TCTATGGGTTGAGCTACCAAACCTTGTCAATCAATTACCTGAAGGCTGGA
AATTACCTTCTTACTTAACAATAATCGTGCAGATTGCTAATATTGGACCA
ATAAGCTATGGTTTACTCAAGAAATATTGTGTTAAACCAGAGCGGAAAGA
AACTCTTGAGCATATCACAATATGCCTTATTTTGGTTTTTGGAATAATAG
GTGCCATCCTGTTAGCTTGTTACTGGAAAAAAACTTCAAACATTTTTGGT
GCTGAACATAGCACCTCTCTACTTTTATTAACATTTGTTATAGCTCTCGT
TGACTGCACTTCATCTGTTACTTTTTTACCCTTCATGTCCTTGTTACCAG
CTTTTTACATGAGTCCTTTTTATGTTGGCGAAAACATGAGTTCCCTTGTT
GCTGCTATATTTGGATTAGCACAAGGTGTGGAAGTTTACAATGGTACTCT
ACCAAACGGACAGGGTAGAGAATTGTTGACACCAGTGAGATATTCACAAA
GTACATTTTTCTTAATTCTTGGTGTATTAATGATCCTTTGTTTTGCTTCA
TACTTGATTCTACGCCTATTCCCTTCAATTAAACAATTGCATATCAACAG
TGATGAAGTTCAAGTTTCAACACATTATGACCGGTTCCATACTTCAGTCT
CTAGTGAATTCCAGGGCGATTCTTCAGATAACTACTTGGTCATTGGTGAT
ACTGGTCATGATAGAAAGTTGATACAAGTCTGTTTTTGTTGTATGACATG
GTTGAATGTCTTACAGAACGGTGTTATGGCATCTGTCGGCTCGTATGCTT
ATGGACCTTATGGGGAATTATCCTACCATTTTGGTAAGTTGATTTCTTTT
CATTTCAAAAATCATCCTCTGTTATAGAGGTTTTTCATTTTTTGTTAAGT
TACATGATTTCTGCCATTATGGAAGCAAACGTTCGATTTGCGAAAGGGAT
CGCCTCTGCGAATTCGAACGTTTGCTTCCATAATGGTGGAAATTACACAA
CTCAACAAACAATAAGAACCTCTATATGATAGTCTAGGAGCGATCTTGGC
AGACACAGGCAAATAGTATATCATATGGGCTTTTATTTATTTTCTCATTA
TGGTCCCTCGGTACCTCAAAACTAGTGGCAAAGCTGGAGAAAAATTTCTA
AGAAGCATTGAAGGGTGTCAGGTCATTTTAGCGCAGAGAACATTGAAATG
TCAATTTTGAAGTACTATCAACTAGAGGTATAATTTCTAAGGTAACTATG
GCTAGCTCTTGAGATGTTCCAATTTAAAATTTTGCTTATTCAGCGTTTTT
CTGCGTTTTTTGATGAGTCAACAGAATTTCAAATTCAAATATCTGGAGGT
TATGTATATTCATTTGATGTACTTTTTCGCCTTCAGCGTCCACTCTTGGT
CCCATCGTTGCTTCGATAAGTTGTTTCCTCTTCATGTTCTTCCCAAGAAA
ATCAATACATTACGTCATTGGTGGATCTGTTGGTTACACTTTAGCTGTTA
TTTATTTACTCATAATGGCAACACTGAGCCCATACCCCTTACTGTATGAC
AAAACATTTGGTAAAATTCTAATCGTAAGTGTTCAGCATTATTTATTATA
TTTTCTCCTTCAATGATTTTCTTCCAAAAAAATATCCCATTTGGATTGAT
TTGCAGAAAGAATCAGAAGTGCCGCTTTAAAGTCGAATGTTTTCTTCCAC
GATTCCACCTTTTCTGATAAATAAATTCTTTTAAACCTCCAAGTGTGTTC
AAATAATGTCAGAAGTTGTCAGAAGGGATAATTCCATGGCCCAGTTTGTG
CACAATAAATAATTCTTTATTTCACCTGTTACCTTAGGTCGTAGTGTGTA
TGGTGGCATCGTCCCTTGTGGCTTACACCAAGTTAGCTATTGCATCTGTT
ATGAGAGATTTTGGTCACCAATACTTATTTTATACTGGGATTACAATGCA
ACTTGGTTCGTTTATTGGTGCTGTTGTTATGTTCCCAATTGTCAATTATG
CCAAAGTATTCAAATCATAATGGAATTAAAATGGAAAGTTGTTTCTTCTT
ATTAGTAATTGTTTGTTCTTTATTTTAACTATGGTATTGGATTCTTGAAG
TGTTTTGATAATGGTCCCAATCCTTTGTTAATATACCTTAAGGGAACTTA
TTTTGGAGGGAACTAATTTTGACAAGCGCCAAAAATCCTGAAGATTTTTA
ATTTTGGCGGGAACTAATTTTGGCAAATGACAGCCTAAATCTGTTCTATT
TTGTCTTATTTAAAGCTTTTTTTGTGAACTCAAGAAGTTACTTAGGCTTA
GTA

Coding sequence (CDS) from alignment at scaffold_355:119362..126164-

>TCONS_00061294 ID=TCONS_00061294|Name=TCONS_00061294|organism=Clytia hemisphaerica|type=CDS|length=3897bp|location=Sequence derived from alignment at scaffold_355:119362..126164- (Clytia hemisphaerica)
GTCGTAGTGTGTATGGTGGCATCGTCCCTTGTGGCTTACACCAAGTTAGC
TATTGCATCTGTTATGAGAGATTTTGGTCACCAATACTTATTTTATACTG
GGATTACAATGCAACTTGGTTCGTTTATTGGTGCTGTTGTTATGTTCCCA
ATTGTCAATTATGCCAAAGTATTCAAATCATAACGTCCACTCTTGGTCCC
ATCGTTGCTTCGATAAGTTGTTTCCTCTTCATGTTCTTCCCAAGAAAATC
AATACATTACGTCATTGGTGGATCTGTTGGTTACACTTTAGCTGTTATTT
ATTTACTCATAATGGCAACACTGAGCCCATACCCCTTACTGTATGACAAA
ACATTTGGTAAAATTCTAATCATGGATAGTTCAACCGATGAAAGCAAGAG
ACTTTCAATCAAAGTTTGGATTCTCTCATGCTTGTTTGGTATCGGCTCAT
GGGTTGTGATGAATGGTCTATGGGTTGAGCTACCAAACCTTGTCAATCAA
TTACCTGAAGGCTGGAAATTACCTTCTTACTTAACAATAATCGTGCAGAT
TGCTAATATTGGACCAATAAGCTATGGTTTACTCAAGAAATATTGTGTTA
AACCAGAGCGGAAAGAAACTCTTGAGCATATCACAATATGCCTTATTTTG
GTTTTTGGAATAATAGGTGCCATCCTGTTAGCTTGTTACTGGAAAAAAAC
TTCAAACATTTTTGGTGCTGAACATAGCACCTCTCTACTTTTATTAACAT
TTGTTATAGCTCTCGTTGACTGCACTTCATCTGTTACTTTTTTACCCTTC
ATGTCCTTGTTACCAGCTTTTTACATGAGTCCTTTTTATGTTGGCGAAAA
CATGAGTTCCCTTGTTGCTGCTATATTTGGATTAGCACAAGGTGTGGAAG
TTTACAATGGTACTCTACCAAACGGACAGGGTAGAGAATTGTTGACACCA
GTGAGATATTCACAAAGTACATTTTTCTTAATTCTTGGTGTATTAATGAT
CCTTTGTTTTGCTTCATACTTGATTCTACGCCTATTCCCTTCAATTAAAC
AATTGCATATCAACAGTGATGAAGTTCAAGTTTCAACACATTATGACCGG
TTCCATACTTCAGTCTCTAGTGAATTCCAGGGCGATTCTTCAGATAACTA
CTTGGTCATTGGTGATACTGGTCATGATAGAAAGTTGATACAAGTCTGTT
TTTGTTGTATGACATGGTTGAATGTCTTACAGAACGGTGTTATGGCATCT
GTCGGCTCGTATGCTTATGGACCTTATGGGGAATTATCCTACCATTTTGG
TCGTAGTGTGTATGGTGGCATCGTCCCTTGTGGCTTACACCAAGTTAGCT
ATTGCATCTGTTATGAGAGATTTTGGTCACCAATACTTATTTTATACTGG
GATTACAATGCAACTTGGTTCGTTTATTGGTGCTGTTGTTATGTTCCCAA
TTGTCAATTATGCCAAAGTATTCAAATCATAACGTCCACTCTTGGTCCCA
TCGTTGCTTCGATAAGTTGTTTCCTCTTCATGTTCTTCCCAAGAAAATCA
ATACATTACGTCATTGGTGGATCTGTTGGTTACACTTTAGCTGTTATTTA
TTTACTCATAATGGCAACACTGAGCCCATACCCCTTACTGTATGACAAAA
CATTTGGTAAAATTCTAATCATGGATAGTTCAACCGATGAAAGCAAGAGA
CTTTCAATCAAAGTTTGGATTCTCTCATGCTTGTTTGGTATCGGCTCATG
GGTTGTGATGAATGGTCTATGGGTTGAGCTACCAAACCTTGTCAATCAAT
TACCTGAAGGCTGGAAATTACCTTCTTACTTAACAATAATCGTGCAGATT
GCTAATATTGGACCAATAAGCTATGGTTTACTCAAGAAATATTGTGTTAA
ACCAGAGCGGAAAGAAACTCTTGAGCATATCACAATATGCCTTATTTTGG
TTTTTGGAATAATAGGTGCCATCCTGTTAGCTTGTTACTGGAAAAAAACT
TCAAACATTTTTGGTGCTGAACATAGCACCTCTCTACTTTTATTAACATT
TGTTATAGCTCTCGTTGACTGCACTTCATCTGTTACTTTTTTACCCTTCA
TGTCCTTGTTACCAGCTTTTTACATGAGTCCTTTTTATGTTGGCGAAAAC
ATGAGTTCCCTTGTTGCTGCTATATTTGGATTAGCACAAGGTGTGGAAGT
TTACAATGGTACTCTACCAAACGGACAGGGTAGAGAATTGTTGACACCAG
TGAGATATTCACAAAGTACATTTTTCTTAATTCTTGGTGTATTAATGATC
CTTTGTTTTGCTTCATACTTGATTCTACGCCTATTCCCTTCAATTAAACA
ATTGCATATCAACAGTGATGAAGTTCAAGTTTCAACACATTATGACCGGT
TCCATACTTCAGTCTCTAGTGAATTCCAGGGCGATTCTTCAGATAACTAC
TTGGTCATTGGTGATACTGGTCATGATAGAAAGTTGATACAAGTCTGTTT
TTGTTGTATGACATGGTTGAATGTCTTACAGAACGGTGTTATGGCATCTG
TCGGCTCGTATGCTTATGGACCTTATGGGGAATTATCCTACCATTTTGGT
CGTAGTGTGTATGGTGGCATCGTCCCTTGTGGCTTACACCAAGTTAGCTA
TTGCATCTGTTATGAGAGATTTTGGTCACCAATACTTATTTTATACTGGG
ATTACAATGCAACTTGGTTCGTTTATTGGTGCTGTTGTTATGTTCCCAAT
TGTCAATTATGCCAAAGTATTCAAATCATAACGTCCACTCTTGGTCCCAT
CGTTGCTTCGATAAGTTGTTTCCTCTTCATGTTCTTCCCAAGAAAATCAA
TACATTACGTCATTGGTGGATCTGTTGGTTACACTTTAGCTGTTATTTAT
TTACTCATAATGGCAACACTGAGCCCATACCCCTTACTGTATGACAAAAC
ATTTGGTAAAATTCTAATCATGGATAGTTCAACCGATGAAAGCAAGAGAC
TTTCAATCAAAGTTTGGATTCTCTCATGCTTGTTTGGTATCGGCTCATGG
GTTGTGATGAATGGTCTATGGGTTGAGCTACCAAACCTTGTCAATCAATT
ACCTGAAGGCTGGAAATTACCTTCTTACTTAACAATAATCGTGCAGATTG
CTAATATTGGACCAATAAGCTATGGTTTACTCAAGAAATATTGTGTTAAA
CCAGAGCGGAAAGAAACTCTTGAGCATATCACAATATGCCTTATTTTGGT
TTTTGGAATAATAGGTGCCATCCTGTTAGCTTGTTACTGGAAAAAAACTT
CAAACATTTTTGGTGCTGAACATAGCACCTCTCTACTTTTATTAACATTT
GTTATAGCTCTCGTTGACTGCACTTCATCTGTTACTTTTTTACCCTTCAT
GTCCTTGTTACCAGCTTTTTACATGAGTCCTTTTTATGTTGGCGAAAACA
TGAGTTCCCTTGTTGCTGCTATATTTGGATTAGCACAAGGTGTGGAAGTT
TACAATGGTACTCTACCAAACGGACAGGGTAGAGAATTGTTGACACCAGT
GAGATATTCACAAAGTACATTTTTCTTAATTCTTGGTGTATTAATGATCC
TTTGTTTTGCTTCATACTTGATTCTACGCCTATTCCCTTCAATTAAACAA
TTGCATATCAACAGTGATGAAGTTCAAGTTTCAACACATTATGACCGGTT
CCATACTTCAGTCTCTAGTGAATTCCAGGGCGATTCTTCAGATAACTACT
TGGTCATTGGTGATACTGGTCATGATAGAAAGTTGATACAAGTCTGTTTT
TGTTGTATGACATGGTTGAATGTCTTACAGAACGGTGTTATGGCATCTGT
CGGCTCGTATGCTTATGGACCTTATGGGGAATTATCCTACCATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038459XLOC_038459Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061294-proteinTCONS_00061294-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061294-exon-scaffold_355-1575043694:126133..126164TCONS_00061294-exon-scaffold_355-1575043694:126133..126164Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1575043694:120832..121788TCONS_00061294-exon-scaffold_355-1575043694:120832..121788Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1575043694:120091..120278TCONS_00061294-exon-scaffold_355-1575043694:120091..120278Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1575043694:119362..119827TCONS_00061294-exon-scaffold_355-1575043694:119362..119827Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1510915933:126133..126164TCONS_00061294-exon-scaffold_355-1510915933:126133..126164Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1510915933:120832..121788TCONS_00061294-exon-scaffold_355-1510915933:120832..121788Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1510915933:120091..120278TCONS_00061294-exon-scaffold_355-1510915933:120091..120278Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1510915933:119362..119827TCONS_00061294-exon-scaffold_355-1510915933:119362..119827Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1491911889:126133..126164TCONS_00061294-exon-scaffold_355-1491911889:126133..126164Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1491911889:120832..121788TCONS_00061294-exon-scaffold_355-1491911889:120832..121788Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1491911889:120091..120278TCONS_00061294-exon-scaffold_355-1491911889:120091..120278Clytia hemisphaericaexon
TCONS_00061294-exon-scaffold_355-1491911889:119362..119827TCONS_00061294-exon-scaffold_355-1491911889:119362..119827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:119362..126164 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.03225	4.06578	2.12135	1.43995	7.22551	3.92932	4.65335	6.87795	6.18577	7.39113	5.11343	4.95287	3.8441	5.32833	6.31121	6.49048	5.32297	6.16574	4.55058	4.68603	7.27325	7.13523	9.046	9.06933	7.53768	10.6134	3.92398	2.31146	9.23509	5.99299
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009357Riboflavin_transptr
Vocabulary: Biological Process
TermDefinition
GO:0032218riboflavin transport
Vocabulary: Molecular Function
TermDefinition
GO:0032217riboflavin transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005887integral component of plasma membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032218 riboflavin transport
cellular_component GO:0005887 integral component of plasma membrane
molecular_function GO:0032217 riboflavin transporter activity
Blast
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BLAST of TCONS_00061294 vs. Swiss-Prot (Human)
Match: S52A3 (Solute carrier family 52, riboflavin transporter, member 3 OS=Homo sapiens GN=SLC52A3 PE=1 SV=4)

HSP 1 Score: 256.144 bits (653), Expect = 6.623e-78
Identity = 160/463 (34.56%), Postives = 243/463 (52.48%), Query Frame = 2 
Query:  110 ILSCLFGIGSWVVMNGLWVELPNLVNQLPEGWKLPSYLTIIVQIANIGPISYGLLKKYCVKPERKETLEHITICLILV-FGIIGAILLACYWKKTSNIFGAEHSTSLLLLTFVIALVDCTSSVTFLPFMSLLPAFYMSPFYVGENMSSLVAAIFGLAQG-------------------VEVYNGTLPNGQGRELLT-----------------PVRYSQSTFFLILGVLMILCFASYLILRLFPSIKQLHIN---SDEVQVSTHYDRFHTSVSSEFQGDSSDNYLVIGDTGHDRKLIQVC-------FCCMTWLNVLQNGVMASVGSYAYGPYGELSYHFASTLGPIVASISCFLFMFFPRKSIHYVIGGSVGYTLAVIYLLIMATLSPYPLLYDKTFGKILIVVVCMVASSLVAYTKLAIASVMRDFGHQYLFYTGITMQLGSFIGAVVMFPIVNYAKVFKS 1357
            +L C+FG+GSWV +NGLWVELP LV +LPEGW LPSYLT+++Q+ANIGP+   LL  +     R   L  + I   L+  G +  I+ A  W  TS +    HS + L+LTF +ALVDCTSSVTFLPFMS LP +Y++ F+VGE +S L+ A+  LAQG                   V      +  G  R L++                 P  +S   FFL+L ++M  C  ++ +L+  P   +  +    +D+V + +   R    +      DSS      G    + K    C       +  + ++N L NG++ SV +Y+   YG ++YH A+TL  +   ++  + MF P +S+ ++   SV  T    Y + MA +SP PLL     G++LIV   ++ S  ++Y K+ +  V+RD     L + G  +QLGS +GA++MFP+VN  ++F S
Sbjct:    7 LLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHF-----RPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQ-----GQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSS 459
The following BLAST results are available for this feature:
BLAST of TCONS_00061294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S52A36.623e-7834.56Solute carrier family 52, riboflavin transporter, ... [more]
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