TCONS_00061294-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061294-protein
Unique Name	TCONS_00061294-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	432

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061294-protein ID=TCONS_00061294-protein|Name=TCONS_00061294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
MDSSTDESKRLSIKVWILSCLFGIGSWVVMNGLWVELPNLVNQLPEGWKL
PSYLTIIVQIANIGPISYGLLKKYCVKPERKETLEHITICLILVFGIIGA
ILLACYWKKTSNIFGAEHSTSLLLLTFVIALVDCTSSVTFLPFMSLLPAF
YMSPFYVGENMSSLVAAIFGLAQGVEVYNGTLPNGQGRELLTPVRYSQST
FFLILGVLMILCFASYLILRLFPSIKQLHINSDEVQVSTHYDRFHTSVSS
EFQGDSSDNYLVIGDTGHDRKLIQVCFCCMTWLNVLQNGVMASVGSYAYG
PYGELSYHFASTLGPIVASISCFLFMFFPRKSIHYVIGGSVGYTLAVIYL
LIMATLSPYPLLYDKTFGKILIVVVCMVASSLVAYTKLAIASVMRDFGHQ
YLFYTGITMQLGSFIGAVVMFPIVNYAKVFKS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038459	XLOC_038459	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061294	TCONS_00061294	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009357	Riboflavin_transptr

Vocabulary: **Biological Process**
Term	Definition
GO:0032218	riboflavin transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0032217	riboflavin transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005887	integral component of plasma membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032218	riboflavin transport
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0032217	riboflavin transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009357	Solute carrier family 52, riboflavin transporter	PFAM	PF06237	DUF1011	coord: 275..368 e-value: 6.3E-24 score: 84.1
None	No IPR available	GENE3D	1.20.1250.20		coord: 5..237 e-value: 1.4E-4 score: 20.7

Blast

[Close]

BLAST of TCONS_00061294-protein vs. Swiss-Prot (Human)
Match: S52A3 (Solute carrier family 52, riboflavin transporter, member 3 OS=Homo sapiens GN=SLC52A3 PE=1 SV=4)

HSP 1 Score: 256.529 bits (654), Expect = 8.723e-81
Identity = 160/463 (34.56%), Postives = 243/463 (52.48%), Query Frame = 0

Query:   17 ILSCLFGIGSWVVMNGLWVELPNLVNQLPEGWKLPSYLTIIVQIANIGPISYGLLKKYCVKPERKETLEHITICLILV-FGIIGAILLACYWKKTSNIFGAEHSTSLLLLTFVIALVDCTSSVTFLPFMSLLPAFYMSPFYVGENMSSLVAAIFGLAQG-------------------VEVYNGTLPNGQGRELLT-----------------PVRYSQSTFFLILGVLMILCFASYLILRLFPSIKQLHIN---SDEVQVSTHYDRFHTSVSSEFQGDSSDNYLVIGDTGHDRKLIQVC-------FCCMTWLNVLQNGVMASVGSYAYGPYGELSYHFASTLGPIVASISCFLFMFFPRKSIHYVIGGSVGYTLAVIYLLIMATLSPYPLLYDKTFGKILIVVVCMVASSLVAYTKLAIASVMRDFGHQYLFYTGITMQLGSFIGAVVMFPIVNYAKVFKS 432
            +L C+FG+GSWV +NGLWVELP LV +LPEGW LPSYLT+++Q+ANIGP+   LL  +     R   L  + I   L+  G +  I+ A  W  TS +    HS + L+LTF +ALVDCTSSVTFLPFMS LP +Y++ F+VGE +S L+ A+  LAQG                   V      +  G  R L++                 P  +S   FFL+L ++M  C  ++ +L+  P   +  +    +D+V + +   R    +      DSS      G    + K    C       +  + ++N L NG++ SV +Y+   YG ++YH A+TL  +   ++  + MF P +S+ ++   SV  T    Y + MA +SP PLL     G++LIV   ++ S  ++Y K+ +  V+RD     L + G  +QLGS +GA++MFP+VN  ++F S
Sbjct:    7 LLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTLLHHF-----RPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFVLQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQ-----GQGYLEEKAAPCCPAHLAFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSS 459

The following BLAST results are available for this feature:

BLAST of TCONS_00061294-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061294-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S52A3	8.723e-81	34.56	Solute carrier family 52, riboflavin transporter, ...	[more]

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TCONS_00061294-protein (polypeptide) - C. hemisphaerica