TCONS_00061321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061321
Unique NameTCONS_00061321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1057

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061321 ID=TCONS_00061321|Name=TCONS_00061321|organism=Clytia hemisphaerica|type=transcript|length=1057bp
TCTCAAGACAAACACTCCATATAAATAGTGTAGACGGTTAGAGATAAATT
CATCACTTCATAGCAAATCATCTCTTGAAGCAGATCATTTCAATATCTCT
CTACTTCACAACTTTTTTTGATCAACCATGGCCAACCGACCTAAAGGATA
CGGATTTACTGCTGAGCAAGCTAATAAGAAAGCCAAGAAATTCGATGCTG
ACCAGGCTAATGAGGCTTTGGACTGGATCAAACAAGTTGTTGGAGATTTC
AGTTGCGAGCCAGTACCTAAGGAGAAAGGAGAATCGAAATTTGTTGAACC
GTTGAAAGATGGAATCGTCCTTTGCAAATTGATGAACAAGATCAAACCAG
GAAGTATCTCAAAAATCAACGAAAGCAAGATGGCTTTCAAACAGATGGAG
AATATCAGTAAATTCTTAGCTGAATGTGAAGCCTTGGGTATGAGCAAAAT
TGATCTTTTCCAAACAGTCGATTTATACGAGGCCCAAAACGTACCACAAG
TTGTCAACGGTATTTACGCTGTTGCACGAAAAGCACGCGTCAACGGCTTC
ACTGGGCCATCACTCGGCCCCGATGAGGCCACTGAGAACAAACGTGAATT
TTCAGAAGAGCAATTGAGATCTGGAGAAGGTGTGATCGGCCTCCAAGCTG
GATCAAACAAAGGAGCTTCACAAGCTGGACAAAACTTCGGCAAAACCAGG
GCTATTATTGATTAAAAAGTCTCTACAGAACTTTCACTTGACAGACTGTT
AAAAACGCCAGAGGGAGAAGATTTTCAGCGCTTCCTTTCGAAGGGCATGG
ATCTCACTTTCTCCGCTGCTAAATAACTCTCGATCCAAACTGTATTAtac
aaatatttaaaatttgtaaaaagtgACCTTTTTTTTGTACAGATATCACG
TTCCTAACTATatgtagtttttttatcaaaataaattatattctaaatga
agtttaattttttttttctcgcgcTAGAAATATGActaagattttcaaaa
gaaaaaaatgtctttttcaaTGTTAAGTCAAGAATTTATACGGCTGATAC
ATGACGG
Run BLAST on NCBI

protein sequence of TCONS_00061321-protein

>TCONS_00061321-protein ID=TCONS_00061321-protein|Name=TCONS_00061321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MANRPKGYGFTAEQANKKAKKFDADQANEALDWIKQVVGDFSCEPVPKEK
GESKFVEPLKDGIVLCKLMNKIKPGSISKINESKMAFKQMENISKFLAEC
EALGMSKIDLFQTVDLYEAQNVPQVVNGIYAVARKARVNGFTGPSLGPDE
ATENKREFSEEQLRSGEGVIGLQAGSNKGASQAGQNFGKTRAIID
Run BLAST on NCBI

transcript from alignment at scaffold_355:111342..112398

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061321 ID=TCONS_00061321|Name=TCONS_00061321|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_355:111342..112398 (Clytia hemisphaerica)
CCGTCATGTATCAGCCGTATAAATTCTTGACTTAACAttgaaaaagacat
ttttttcttttgaaaatcttagTCATATTTCTAgcgcgagaaaaaaaaaa
ttaaacttcatttagaatataatttattttgataaaaaaactacatATAG
TTAGGAACGTGATATCTGTACAAAAAAAAGGTcactttttacaaatttta
aatatttgtaTAATACAGTTTGGATCGAGAGTTATTTAGCAGCGGAGAAA
GTGAGATCCATGCCCTTCGAAAGGAAGCGCTGAAAATCTTCTCCCTCTGG
CGTTTTTAACAGTCTGTCAAGTGAAAGTTCTGTAGAGACTTTTTAATCAA
TAATAGCCCTGGTTTTGCCGAAGTTTTGTCCAGCTTGTGAAGCTCCTTTG
TTTGATCCAGCTTGGAGGCCGATCACACCTTCTCCAGATCTCAATTGCTC
TTCTGAAAATTCACGTTTGTTCTCAGTGGCCTCATCGGGGCCGAGTGATG
GCCCAGTGAAGCCGTTGACGCGTGCTTTTCGTGCAACAGCGTAAATACCG
TTGACAACTTGTGGTACGTTTTGGGCCTCGTATAAATCGACTGTTTGGAA
AAGATCAATTTTGCTCATACCCAAGGCTTCACATTCAGCTAAGAATTTAC
TGATATTCTCCATCTGTTTGAAAGCCATCTTGCTTTCGTTGATTTTTGAG
ATACTTCCTGGTTTGATCTTGTTCATCAATTTGCAAAGGACGATTCCATC
TTTCAACGGTTCAACAAATTTCGATTCTCCTTTCTCCTTAGGTACTGGCT
CGCAACTGAAATCTCCAACAACTTGTTTGATCCAGTCCAAAGCCTCATTA
GCCTGGTCAGCATCGAATTTCTTGGCTTTCTTATTAGCTTGCTCAGCAGT
AAATCCGTATCCTTTAGGTCGGTTGGCCATGGTTGATCAAAAAAAGTTGT
GAAGTAGAGAGATATTGAAATGATCTGCTTCAAGAGATGATTTGCTATGA
AGTGATGAATTTATCTCTAACCGTCTACACTATTTATATGGAGTGTTTGT
CTTGAGA

Coding sequence (CDS) from alignment at scaffold_355:111342..112398

>TCONS_00061321 ID=TCONS_00061321|Name=TCONS_00061321|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at scaffold_355:111342..112398 (Clytia hemisphaerica)
TTAATCAATAATAGCCCTGGTTTTGCCGAAGTTTTGTCCAGCTTGTGAAG
CTCCTTTGTTTGATCCAGCTTGGAGGCCGATCACACCTTCTCCAGATCTC
AATTGCTCTTCTGAAAATTCACGTTTGTTCTCAGTGGCCTCATCGGGGCC
GAGTGATGGCCCAGTGAAGCCGTTGACGCGTGCTTTTCGTGCAACAGCGT
AAATACCGTTGACAACTTGTGGTACGTTTTGGGCCTCGTATAAATCGACT
GTTTGGAAAAGATCAATTTTGCTCATACCCAAGGCTTCACATTCAGCTAA
GAATTTACTGATATTCTCCATCTGTTTGAAAGCCATCTTGCTTTCGTTGA
TTTTTGAGATACTTCCTGGTTTGATCTTGTTCATCAATTTGCAAAGGACG
ATTCCATCTTTCAACGGTTCAACAAATTTCGATTCTCCTTTCTCCTTAGG
TACTGGCTCGCAACTGAAATCTCCAACAACTTGTTTGATCCAGTCCAAAG
CCTCATTAGCCTGGTCAGCATCGAATTTCTTGGCTTTCTTATTAGCTTGC
TCAGCAGTAAATCCGTATCCTTTAGGTCGGTTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038472XLOC_038472Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061321-proteinTCONS_00061321-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061321-exon-scaffold_355-1491911889:111342..112398TCONS_00061321-exon-scaffold_355-1491911889:111342..112398Clytia hemisphaericaexon
TCONS_00061321-exon-scaffold_355-1510915933:111342..112398TCONS_00061321-exon-scaffold_355-1510915933:111342..112398Clytia hemisphaericaexon
TCONS_00061321-exon-scaffold_355-1575043694:111342..112398TCONS_00061321-exon-scaffold_355-1575043694:111342..112398Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:111342..112398 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0836739	0.0407976	0.23685	0.185376	3.89294	3.52209	10.1659	11.6322	2.6794	2.44548	0.0847729	0.417948	1212.87	958.017	10.7379	28.9615	68.2471	107.035	1798.65	1163.37	0.121351	0.118382	0.335786	0.174445	0	0.120266	0.860502	0.306117	0.371486	0.567728
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00061321 vs. Swiss-Prot (Human)
Match: TAGL3 (Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.246e-43
Identity = 92/202 (45.54%), Postives = 119/202 (58.91%), Query Frame = 2 
Query:  128 MANRPKGYGFTAEQANKKAKKFDADQANEALDWIKQVVGDFSCEPVPKEKGESKFVEPLKDGIVLCKLMNKIKPGS---ISKINESKMAFKQMENISKFLAECEALGMSKIDLFQTVDLYEAQNVPQVVNGIYAVARKARVNG---FTG-PSLGPDEATENKREFSEEQLRSGEGVIGLQAGSNKGASQAGQN-FGKTRAII 709
            MANR   YG + E   K  +K+DAD  N+ +DWI     +    P P   G + F + L DG VLCKL+N + P     I KI+ESKMAFKQME IS+FL   E  G+   D+FQTVDL+E +++  V   + A+   A       + G PS    +A +N+R FSEEQLR G+ VIGLQ GSNKGASQAG   +G  R I+
Sbjct:    1 MANRGPSYGLSREVQEKIEQKYDADLENKLVDWIILQCAEDIEHPPP---GRAHFQKWLMDGTVLCKLINSLYPPGQEPIPKISESKMAFKQMEQISQFLKAAETYGVRTTDIFQTVDLWEGKDMAAVQRTLMALGSVAVTKDDGCYRGEPSWFHRKAQQNRRGFSEEQLRQGQNVIGLQMGSNKGASQAGMTGYGMPRQIM 199
The following BLAST results are available for this feature:
BLAST of TCONS_00061321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL31.246e-4345.54Transgelin-3 OS=Homo sapiens GN=TAGLN3 PE=1 SV=2[more]
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