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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=transcript|length=1178bp
tTTCGTTTTTCTTGTGAAAGTTAAGTAAGAATTAAGAATAAGTACTTTCt
acttttataaaattttataaaatgggTCAAAAATATGTTTTACATAAAAT
TTATATATACTGTGTGATAAAAATATCCATGAAACATTTACATTGTCGAG
TATActttataaataaaatctataatataaaattttattgaCACGAAAAT
AAATTACGCTATTAAAGAAAGGCGTTCAAGGGCATGCTTCATGTAATGTT
taatacggaagcacccaaaaaagcctgTGCGTCCgccactaattttgaat
taaaaagaaataaaactaGTATCAAACGCTCGGGCTATTTTGGGTACTTC
CgtaaaaaacattacgtcataaatattATGAGTTGAAGACTGTCGAGAGA
AAACGTAATccgttaaggccggtctccacttttgcacgaaatgagcgaaa
actttatAACGTTCTTGGAAGGTCATTGggcggttgaaaaatgaagcaat
tccattggccaAATCTGCCGTAAcggtttaaaaaagttgaacttcttTCT
TAGTCGCTTTTTTTAGTGACGTAAAAAAATGGTTGAGAAAATAAACTGTC
GCCTATTTCACtcaaaagtggagaccggccttcaGTAAGATTTCTTCttg
ggaaaaattttgaaaaagttattcTCATTCGCTGTTCTTGATGCACATTG
ACTGAGACAGAGACAACCTCAAAAAGATAAAGTTGTATTAAAAGAATGGA
ATATCCAAAAATACTATAAACAAACAATAAGGGACTGCATCAGTTTATGG
TCTCCACTATAACCGTCTTGTATATCCTTCATAACCGCTCCATTACGCAT
TAAATATTGCGCAACATCGAAATGTCCGAATAATGACGTAATCTGAAGAG
GTGAAAGCCCTGACCACGATTTTAAATTAATGTCTGCTCCATAACTCATG
AGGAGTTTAACAATATCCAAGTCTCCTAGAACACAAGCTGTGTGAAGAGC
CGACAGACCAGGTTCTTTCATGAAGTTCacattaacttttttattttgta
gaatTTTCTGTAAAGTAGAAATGTCTGACTCGGTTACAAAATAGTGTAAT
AAGTTTTCTTGACTATTGACGGCTGCAAATTTACGCCCTTTTAAACTCGT
TTGTTTATTTGAAGACGTCTTCCGTTGA Run BLAST on NCBI protein sequence of TCONS_00061319-protein >TCONS_00061319-protein ID=TCONS_00061319-protein|Name=TCONS_00061319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
QRKTSSNKQTSLKGRKFAAVNSQENLLHYFVTESDISTLQKILQNKKVNV
NFMKEPGLSALHTACVLGDLDIVKLLMSYGADINLKSWSGLSPLQITSLF
GHFDVAQYLMRNGAVMKDIQDGYSGDHKLMQSLIVCL Run BLAST on NCBI transcript from alignment at scaffold_355:52366..53543 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at scaffold_355:52366..53543 (Clytia hemisphaerica)
TCAACGGAAGACGTCTTCAAATAAACAAACGAGTTTAAAAGGGCGTAAAT
TTGCAGCCGTCAATAGTCAAGAAAACTTATTACACTATTTTGTAACCGAG
TCAGACATTTCTACTTTACAGAAAattctacaaaataaaaaagttaatgt
GAACTTCATGAAAGAACCTGGTCTGTCGGCTCTTCACACAGCTTGTGTTC
TAGGAGACTTGGATATTGTTAAACTCCTCATGAGTTATGGAGCAGACATT
AATTTAAAATCGTGGTCAGGGCTTTCACCTCTTCAGATTACGTCATTATT
CGGACATTTCGATGTTGCGCAATATTTAATGCGTAATGGAGCGGTTATGA
AGGATATACAAGACGGTTATAGTGGAGACCATAAACTGATGCAGTCCCTT
ATTGTTTGTTTATAGTATTTTTGGATATTCCATTCTTTTAATACAACTTT
ATCTTTTTGAGGTTGTCTCTGTCTCAGTCAATGTGCATCAAGAACAGCGA
ATGAgaataactttttcaaaatttttcccaaGAAGAAATCTTACtgaagg
ccggtctccacttttgaGTGAAATAGGCGACAGTTTATTTTCTCAACCAT
TTTTTTACGTCACTAAAAAAAGCGACTAAGAaagaagttcaactttttta
aaccgTTACGGCAGATTtggccaatggaattgcttcatttttcaaccgcc
CAATGACCTTCCAAGAACGTTataaagttttcgctcatttcgtgcaaaag
tggagaccggccttaacggATTACGTTTTCTCTCGACAGTCTTCAACTCA
TaatatttatgacgtaatgttttttacGGAAGTACCCAAAATAGCCCGAG
CGTTTGATACtagttttatttctttttaattcaaaattagtggcGGACGC
AcaggcttttttgggtgcttccgtattaAACATTACATGAAGCATGCCCT
TGAACGCCTTTCTTTAATAGCGTAATTTATTTTCGTGtcaataaaatttt
atattatagattttatttataaagTATACTCGACAATGTAAATGTTTCAT
GGATATTTTTATCACACAGTATATATAAATTTTATGTAAAACATATTTTT
GAcccattttataaaattttataaaagtaGAAAGTACTTATTCTTAATTC
TTACTTAACTTTCACAAGAAAAACGAAa Coding sequence (CDS) from alignment at scaffold_355:52366..53543 >TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_355:52366..53543 (Clytia hemisphaerica)
CAACGGAAGACGTCTTCAAATAAACAAACGAGTTTAAAAGGGCGTAAATT
TGCAGCCGTCAATAGTCAAGAAAACTTATTACACTATTTTGTAACCGAGT
CAGACATTTCTACTTTACAGAAAattctacaaaataaaaaagttaatgtG
AACTTCATGAAAGAACCTGGTCTGTCGGCTCTTCACACAGCTTGTGTTCT
AGGAGACTTGGATATTGTTAAACTCCTCATGAGTTATGGAGCAGACATTA
ATTTAAAATCGTGGTCAGGGCTTTCACCTCTTCAGATTACGTCATTATTC
GGACATTTCGATGTTGCGCAATATTTAATGCGTAATGGAGCGGTTATGAA
GGATATACAAGACGGTTATAGTGGAGACCATAAACTGATGCAGTCCCTTA
TTGTTTGTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061319-exon-scaffold_355-1491911889:52366..53543 | TCONS_00061319-exon-scaffold_355-1491911889:52366..53543 | Clytia hemisphaerica | exon |
| TCONS_00061319-exon-scaffold_355-1510915933:52366..53543 | TCONS_00061319-exon-scaffold_355-1510915933:52366..53543 | Clytia hemisphaerica | exon |
| TCONS_00061319-exon-scaffold_355-1575043694:52366..53543 | TCONS_00061319-exon-scaffold_355-1575043694:52366..53543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_355 | supercontig | scaffold_355:52366..53543 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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