TCONS_00000588 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000588
Unique NameTCONS_00000588
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000588 ID=TCONS_00000588|Name=TCONS_00000588|organism=Clytia hemisphaerica|type=transcript|length=1946bp
GTTTTAGATAAAACATATAGAGCatacaaaaagttataaaaaagttACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATgacaaac
aaaatggtagacctCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGAGGGTTGTTATCGTGGAACAGGTGCATCGTCAGaaagaaatcct
gaaaaacgCAGAAACCACACCACAATTTCTCATCTCAACACTAAAAGACC
TGCACAAAGCTATCCCTTCAAAAAGTGTTCTACTAGAGACGAAAGTTGGT
CACGTGGTCAATAAATTACGTCATCATTCCGATCCAGAGGTCAAAGAACA
GGCGCGTTTACTACTTAAGAAATGGAAGAAGTTTTATAGAGAGATCAATG
CACGCCAACCAATAGATGTACGGTCTGACTTGAAGACGGAAAAGTTCCGA
ACAAAAGCAAAACAGCTTTTAAGGAAAGCAATCGGCATTAAAGATGACCA
CGCTATAGCTTTGTCGATCGAGAAAACGATATACCGCGCTGAGAAATCGG
TCAACACGCCAAAATATCGGAGGCTGATACGAACTATATGCATCAAAGTA
ACTAATGACTCGCAGACCAAGGAACAACTCAAAAACGGCAAACTTTCTAC
TGTTTCGTTGATTAAAATGATTGAAAGTTCAGTGACTTGAGGTTTGACGA
ATGAAAACGGTTTTCAGTTTGAGAGaaagatataaaatacaaaaatgtca
GCGCTTTTATCCTTGATATTTTACACGTGGCTAGGATATTGGTCATACCG
TGTCATTAAATTCGTCTTGTTTATGATCACGTGTCATGTTCTACCTTCTT
TTGGTATTTATAATGACCTCAAGAAGTATGGTCAATGGGCTATCATTACT
GGCGCTACTGATGGTATTGGTAAGGCTTATGCTGTGGAGCTCGCCAAGCA
GAAATTCAACATCGTCTTGATCAGCCGAACGGAAGAGAAATTACAACGAG
TGGCTGAGGAGATTAAAAATGCTCATGGTGTCGACACCAAATatattgtt
tttgatttttctacacCTGAGGGTTATGAAGAACGTATTGGGAATGTGAT
CTCAGATCTGGATGTTGGAGTTTTGGTCAATAACGTTGGTATGTCCAGTA
AGTGGGATCGCTTGTATGATGAGTTGGAGATGGCTGAACATATCCGTGTC
ATGCATACCAACACCTTTGGTGAAATGCATATGACGTATATGCTGACGAA
GAAAATGATTCAACAAAAACGTGGTATTATGATTCACATTTCCAGCTTCT
TTGGTTATTATCCGATCGGTTTAATAAGTGTTTATTCACCTACTAAAGCC
TTCGTCAACTCTTTCGTCCAGAATCTCCAAGCTGAAACTAAACACTGCAA
AGACGTCCATCATCAATTAGTGACGCCCTTCTTTGTTGCCACAAATATGA
CCAAAGGGAGTGTTAAAGTCACCAGAGTTACCCCAGATGCTGCCACCTTT
GCTGGCGCAGCTTTACGCACCGTTGGCTTAACGCCGCACACTTTTGGGTA
CTGGACTCATGATATTCTTGGGTCAATCTTAATGACCTTTCCACCTTTTG
TTTTTGGTAGATTACCGTTtgtcaaaagctttcaaaagtATTGTAAAAAC
AGACGCTTAAAGACCCTCGAGAAAAGCGAGTGAGAAAAACATTAGGTTGG
TTTCATAATTTTGATTATTGCTTTGTTTTTGCTACCCATTTATATCGTAA
CTTTTACAGTGCGTAGAGACCCCTAGATATCCAACTTCTCAGATAATCTT
CCtgtcatttttgtaaataataTTAACCTCTGGGTATCGTATTTTGAAcc
aggggggggcacgcagttactacaagacagtatgacacttactaccgtgg
tggtactgtattcagaagttatgaaaacagttactacacagtgtag
Run BLAST on NCBI

transcript from alignment at sc0000002:1197968..1202743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000588 ID=TCONS_00000588|Name=TCONS_00000588|organism=Clytia hemisphaerica|type=transcript|length=4776bp|location=Sequence derived from alignment at sc0000002:1197968..1202743- (Clytia hemisphaerica)
GTTTTAGATAAAACATATAGAGCATACAAAAAGTTATAAAAAAGTTACAG
CATGGATAAATTCGTGATTAGAACACCACGTGATCAGGTCAATGACAAAC
AAAATGGTAGACCTCAGAAGCCAAGGAAGAAACAGACCACTATTGAGTCA
TTATCGGTGAGCAATTGAATTTAATGCACTGCACAATGGTAAAGTACACA
GGATTTTTCATTGAAACTTCACACCCCCTTCTCACTTTTCACAGACCCGG
TAAGTTTTTTTCAGCCAGTGGGAGTAGAAATATCCGACAGGGTCAACTTT
TGGTCATTCCAAGAAACCATTTTTTAGGGTTTGTTTTAAAAAGTAATTGA
AACTTTGAATCTGATAGCATCCACAATCCAGGTAGTCAATAGATGGTTTT
TTATGTTTTGTTTTTAAGTTACGTAACTTCTGCAATTATGAAAGCAAACG
TTCGATTTGCGAATGTATCCTCTACATGTTCGAATGTTTGCTTCCATAAT
GGCTGAAATTACGTAAGATAGCCAAACATGAAAAACCTCTATACTGTATT
TACAATCGAAATCAAATCTTTTTAGAGGGTTGTTATCGTGGAACAGGTGC
ATCGTCAGAAAGAAATCCTGAAAAACGCAGAAACCACACCACAATTTCTC
ATCTCAACACTAAAAGACCTGCACAAAGCTATCCCTTCAAAAAGTGTTCT
ACTAGAGACGAAAGTTGGTCACGTGGTCAATAAATTACGTCATCATTCCG
ATCCAGAGGTCAAAGAACAGGCGCGTTTACTACTTAAGAAATGGAAGAAG
TTTTATAGAGAGATCAATGCACGCCAACCAATAGATGTACGGTCTGACTT
GAAGACGGAAAAGTTCCGAACAAAAGCAAAACAGCTTTTAAGGAAAGCAA
TCGGCATTAAAGTAAGTCGTATTTGATTTCTTTATTATCCTTTTTGCTGG
ACAAGTTTTTAAAAATCCTTCATGTGCAGATTGAACAGATTTCCCTTCTT
TTATAGGAAGTTGTCGTTTTTGTTTAGGTTTCAGTTTTCGTTATTTTTCT
TTGTTCAGAATGGCCCTTCATGGAATTAATTCTTCAGATGCTTAAAAGCT
TTTGAATTTCGGAGAATGCCACTTTAAAACAAATGTTATTGATTATTACC
CGCATCTGCATTCTTTGTCCTTAGCAGTAATAAATAGCCCCTGTTTTTTT
AGATCATTGGATTATGGAGTCTCCATTTCTAACGCAAACGTGTCTTCAAC
TCGAACAAGTTGATAGACCCTTCAAATTAGCAAACTCTATAAACCAGTCT
CAAAAACTGGGACAAATTTGTGTTCCCCGTGCGTGTTCTAATTCTAGAAA
TTCCACTGTATCTATGCTTGTTCTTATACTTTTAAATAACTTTAGTTTGG
GCAAAAATGAAAAAATGTAGTGTTTCTGGAAACCGGCCGGGTGAAAAAAA
ATAATTTTCTGACCCGGCCGCAGACTACATTAGTAGTTGATACATATTCA
AGGCGTACATAAAAGTTATCTTTAAAGTTCAATGATCTTAAGTTATCAAA
AATAGCAACAAAAAAAATTTTTCGGCCGGCCCCATGAAAGCTTTTTTCCT
TAACCCGCATTCCGGAAACACTACATTTTTTTATTTTCACCTTCCCTGTA
ATTTTAAAATCACAAAATGCAGACCCTAAAAAGGACATATTATTGACCTA
GGCCTTTTTCCTTCGAAGTATTTCATTATTTGATTGAAATAATAATTTTA
GAAACTTGCAAACAATCTCATTTCCAAAAGGGTTTTTTGAAATAATTTTT
GTGAACATGGATTCTAATTAACATCATTCAAAAATTAAGTAACTTTACGT
CTCTTTCATTAGCAAGGGAATGTTACAAAATTTCTTAGCAATTAAAATCA
AATGTATATAACGATTGAAAATAGAAAAATTCCATTGTTCTCTAAAAATG
TTAAAAATGTGAAAACCGCCTATACAAAAACGGCGAAAATATAAAGCTGC
AACCATCTTTTTTTTGCGTTTGGAAATGAATTTTGATTTTCTTGAACAAA
ATCTTCCGAAAATGGATTAATATTACAGGAAGATCTTGTAATATAATCTG
ATTGCAAACTTGCTGGATATATACCACACCTCGGGTGAAAGTTTATAAAA
AATTGAGCTCATAAAAACTTCAAGTCAGCTTATAGACTACGAATGCGTAG
GAGTAATAAGTAAATGAAGAAGTTTTTGGAAAAGTTGTTACATGATTCTT
TCGAAATACAGATAGAATAGCAAGATTTTTTTAGAACAGAGTTTATGTTT
TCTGAATGAAGTTTTTAAAAGCCATCAAACTTTCGATGATAAGCATATAA
TTAGGACAATTAAATGGGATTTTATCTTTTTTGACTACACATGTTATCAG
CAGTAATAGATTAGCCGACGAATTTTCATGTTTTAACTTTTAGTTTTTTT
CATATATATTTGTTCGTTAGGATGACCACGCTATAGCTTTGTCGATCGAG
AAAACGATATACCGCGCTGAGAAATCGGTCAACACGCCAAAATATCGGAG
GCTGATACGAACTATATGCATCAAAGTAACTAATGACTCGCAGACCAAGG
AACAACTCAAAAACGGCAAACTTTCTACTGTTTCGTTGATTAAAATGATT
GAAAGTTCAGTGACTTGAGGTTTGACGAATGAAAACGGTTTTCAGTTTGA
GAGGTTTGTATTGCATGAAAATTTCATTATTTTGGAAGACCTTTGGTAAA
GCTGTACCTTTAGCCTTTAACCATTGAACTTAAAGAGGATTCTCAATCGC
GGCTCGTTTTTTAACAATATTAAAAATTGGTTTGCTTGTATATTATCTGT
GTACATAGTTGTTTTTATTCAAACCCCAAGGAAAATGAAATTTTTACAGA
AACATTAATTAAATTGATTAATCCTCCTGAATATTTTCAACTTGAAGTTC
AAGCACAGAAGTGTTCTCATTTTAGTTGAATAAAATTTATAAACATATAT
TTAGACGTTTCGGTGTCTTCCGATCACCATATCATCAGTAAAAATTAGGA
AACACTAAACCAATTTTCAATATATCATCTAATTTACAAATACAGCCTTT
CCAAACATGATACATATAAATACTTCTAATGCATGGACAGATTTCGCAAA
ATGAAAGTAACCTGAAACTATTTGTTTCCATGAGCAAGTATTGACACGAT
ATTTCAATAATCTCTTGTCAATGAATTTATTTTATCAAAATAGATAATCT
TTGCAGCTCTTATTTCAGTTTGTTTCAGCTTGTTTGATTGAGCTCTCTGC
AAATTGATACATGTGTGTATGTAGAAAGAAACGTTGCTAGAAAACACACC
TCTTTTATGTAGGAAAGGAGTTTTCAGAAATTTGGGATCGTTTAAAGAAT
AATGGACAATTCATGTAACTGAGAGATGCAATTTTTGTGCTTTAGTGAAC
AAATTTTGGCCGAAATATGACAGACAGACAGACAGACAGACGGACAAAGT
TATGGTGAAATTTTTGCTTTATTCAAATTATTTTATTATTTTCCATTTTA
TTTAGAAAGATATAAAATACAAAAATGTCAGCGCTTTTATCCTTGATATT
TTACACGTGGCTAGGATATTGGTCATACCGTGTCATTAAATTCGTCTTGT
TTATGATCACGTGTCATGTTCTACCTTCTTTTGGTATTTATAATGACCTC
AAGAAGTATGGTCAATGGGCTATCATTACTGGCGCTACTGATGGTATTGG
TAAGGCTTATGCTGTGGAGCTCGCCAAGCAGAAATTCAACATCGTCTTGA
TCAGCCGAACGGAAGAGAAATTACAACGAGTGGCTGAGGAGATTAAAAAT
GCTCATGGTGTCGACACCAAATATATTGTTTTTGATTTTTCTACACCTGA
GGGTTATGAAGAACGTATTGGGAATGTGATCTCAGATCTGGATGTTGGAG
TTTTGGTCAATAACGTTGGTATGTCCAGTAAGTGGGATCGCTTGTATGAT
GAGTTGGAGATGGCTGAACATATCCGTGTCATGCATACCAACACCTTTGG
TGAAATGCATATGACGTATATGCTGACGAAGAAAATGATTCAACAAAAAC
GTGGTATTATGATTCACATTTCCAGCTTCTTTGGTTATTATCCGATCGGT
TTAATAAGTGTTTATTCACCTACTAAAGCCTTCGTCAACTCTTTCGTCCA
GAATCTCCAAGCTGAAACTAAACACTGCAAAGACGTCCATCATCAATTAG
TGACGCCCTTCTTTGTTGCCACAAATATGACCAAAGGGAGTGTTAAAGTC
ACCAGAGTTACCCCAGATGCTGCCACCTTTGCTGGCGCAGCTTTACGCAC
CGTTGGCTTAACGCCGCACACTTTTGGGTACTGGACTCATGATATTCTTG
GGTCAATCTTAATGACCTTTCCACCTTTTGTTTTTGGTAGATTACCGTTT
GTCAAAAGCTTTCAAAAGTATTGTAAAAACAGACGCTTAAAGACCCTCGA
GAAAAGCGAGTGAGAAAAACATTAGGTTGGTTTCATAATTTTGATTATTG
CTTTGTTTTTGCTACCCATTTATATCGTAACTTTTACAGTGCGTAGAGAC
CCCTAGATATCCAACTTCTCAGATAATCTTCCTGTCATTTTTGTAAATAA
TATTAACCTCTGGGTATCGTATTTTGAACCAGGGGGGGGCACGCAGTTAC
TACAAGACAGTATGACACTTACTACCGTGGTGGTACTGTATTCAGAAGTT
ATGAAAACAGTTACTACACAGTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000348XLOC_000348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000588-exon-sc0000002-1575043694:1202588..1202743TCONS_00000588-exon-sc0000002-1575043694:1202588..1202743Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1575043694:1201833..1202168TCONS_00000588-exon-sc0000002-1575043694:1201833..1202168Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1575043694:1200041..1200273TCONS_00000588-exon-sc0000002-1575043694:1200041..1200273Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1575043694:1197968..1199188TCONS_00000588-exon-sc0000002-1575043694:1197968..1199188Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1510915933:1202588..1202743TCONS_00000588-exon-sc0000002-1510915933:1202588..1202743Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1510915933:1201833..1202168TCONS_00000588-exon-sc0000002-1510915933:1201833..1202168Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1510915933:1200041..1200273TCONS_00000588-exon-sc0000002-1510915933:1200041..1200273Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1510915933:1197968..1199188TCONS_00000588-exon-sc0000002-1510915933:1197968..1199188Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1491911889:1202588..1202743TCONS_00000588-exon-sc0000002-1491911889:1202588..1202743Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1491911889:1201833..1202168TCONS_00000588-exon-sc0000002-1491911889:1201833..1202168Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1491911889:1200041..1200273TCONS_00000588-exon-sc0000002-1491911889:1200041..1200273Clytia hemisphaericaexon
TCONS_00000588-exon-sc0000002-1491911889:1197968..1199188TCONS_00000588-exon-sc0000002-1491911889:1197968..1199188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1197968..1202743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53377	1.61966	3.49012	3.43091	3.12451	0	0.238533	0.000547674	7.55145	4.80269	7.4638	5.16625	10.4308	10.8781	11.4692	12.7313	12.8908	10.0008	11.8872	8.58216	25.4145	27.9364	8.6334	9.34658	0.224872	0.347181	3.55617	2.66719	8.81358	6.59477
Blast
[Close]
BLAST of TCONS_00000588 vs. Swiss-Prot (Human)
Match: DHB12 (Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sapiens GN=HSD17B12 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 8.767e-51
Identity = 114/320 (35.62%), Postives = 186/320 (58.13%), Query Frame = 1 
Query:  748 SALLSLIFYTWLG-----YWSYRVIKFVLFMITCHVLPSFGIYNDL---KKYGQWAIITGATDGIGKAYAVELAKQKFNIVLISRTEEKLQRVAEEIKNAHGVDTKYIVFDFSTPEGYEERIGNVISDLDVGVLVNNVGMSSKWDRLYDELEMAEHI--RVMHTNTFGEMHMTYMLTKKMIQQKRGIMIHISSFFGYYPIGLISVYSPTKAFVNSFVQNLQAETKHCKDVHHQLVTPFFVATNMTKGSVKVTRVTPDAATFAGAALRTVGLTPHTFGYWTHDILGSILMTFPPFVFGRLPFVKSFQKYCKNRRLKTLEKS 1677
            SAL +  F  W+G     Y + R I + LF      L  +G+ N+       G+WA++TG+TDGIGK+YA ELAK    +VLISR+++KL +V+ EIK    V+T+ I  DF++ + Y ++I   ++ L++G+LVNNVGMS ++   + ++   +++  ++++ N      MT ++   M+++ +G +++ISS  G  P+ L+++YS TK FV+ F Q L  E +  K V  Q V P+FVAT + K   K T   P   TF  +A++TVGL   T GY  H ++GSI+   P +++  L  V +  K  +   LK  +K+
Sbjct:    3 SALPAAGFLYWVGAGTVAYLALR-ISYSLFT----ALRVWGVGNEAGVGPGLGEWAVVTGSTDGIGKSYAEELAKHGMKVVLISRSKDKLDQVSSEIKEKFKVETRTIAVDFASEDIY-DKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLVLPGMVERSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYR-SKGVFVQSVLPYFVATKLAKIR-KPTLDKPSPETFVKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIY--LKIVMNMNKSTRAHYLKKTKKN 312
The following BLAST results are available for this feature:
BLAST of TCONS_00000588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHB128.767e-5135.63Very-long-chain 3-oxoacyl-CoA reductase OS=Homo sa... [more]
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