TCONS_00006063 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006063
Unique NameTCONS_00006063
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006063 ID=TCONS_00006063|Name=TCONS_00006063|organism=Clytia hemisphaerica|type=transcript|length=829bp
aaaggaaaatagAATTATCACAAATCTatgaaaattaataaatcataaat
atgaaaataatacGTTTTACATGTAGAAAGTGTTCAGAAGAAATTGAGAG
GGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAGAGCA
GAGtgtgtttaaaatattttcataaacttgGTATGCACACAATATGACAA
CTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCAACCA
GATCACGACGATGTCGAAGTTGCTGCAGGAAAAATCACCAAATGGGTTGA
AGGAGACTTAAGATTGAAGAATGACATTAAACGGAACGAACATTTGAGAA
CTTTATTGAAGAAGTATCAAGAAGAATTGAAAGCATTAATGATCCAAGAT
GATAGTAAATATcggaaagaaattaaaatggaaaGAAAGTATCAAGAAAA
GAAATTGaataGATTAATGGTCCACGAGGCAAAACAAGTTGAATCCAGAA
GTTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAGAAA
ATCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTAAAAA
GAGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAATGCG
TTCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTGGCAA
CGAAAAATTGAGGACTCTTGGAGACGAATTGAATCTCAATTGTTGTATAT
GCATGAAAAGGAAGTCAAGGAGaagaacgaaaaagaagaaaaaattcgtC
AAAACAAATTGAACGCTAGACAAAATGAA
Run BLAST on NCBI

transcript from alignment at sc0000062:295882..298381-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006063 ID=TCONS_00006063|Name=TCONS_00006063|organism=Clytia hemisphaerica|type=transcript|length=2500bp|location=Sequence derived from alignment at sc0000062:295882..298381- (Clytia hemisphaerica)
AAAGGAAAATAGAATTATCACAAATCTATGAAAATTAATAAATCATAAAT
ATGAAAATAATACGTTTTACATGTAGAAAGTGTTCAGAAGAAATTGAGAG
GGTAAAGGTTACTTTCTCGGCTCATCGATTTATTTTTTGAGAGCAGAGCA
GAGTGTGTTTAAAATATTTTCATAAACTTGGTATGCACACAATATGACAA
CTTTTGAAAATACATTTCTTACAACAGAGGAGGAATATGAACACCAACCA
GATCACGACGATGTCGAAGGTAGGATTTGTATATTTCTCTTGTATTTGAA
GTAGAAACTTATTTCCTTAGGACAATGCACGAAGAATAAATTACATTATA
CAAAAACAAAGACTTCGATAGCTAAAATATTGAGAAAAAGTTAAGAACAT
TTTAAGAACATTTTGAACGTTTTTATATAAAAAACGTGTTTGAGCCTATC
CGCAAAGTTTTCGCGAAGACTAGGGTATTTTTGCGATTTTGAGTCATTTA
TAAGCGTTAAGAATCGGTAGTATCCTTTTTTAAATAAAGCTTTGGCAAAT
CATTCAAACATCCCCTTTGTTTATCTCATTTTCAAGTTGCTGCAGGAAAA
ATCACCAAATGGGTTGAAGGAGACTTAAGATTGAAGAATGACATTAAACG
GAACGAACATTTGAGAACTTTATTGAAGAAGTATCAAGAAGAATTGAAAG
CATTAATGATCCAAGATGATAGTAAATATCGGAAAGAAATTAAAATGGAA
AGAAAGTATCAAGAAAAGAAATTGGTAAGGATACATTCTGTCAAGAGATT
TTTATAGTACACGTTTTTTATTGAACAAACTTTATAAAAACAAGGCTTCG
ATGGGCAAAAAATACTCACAAAATGGTGAAATTAGACCATATTAAGAACA
TCCAAAGGCTTGAAAAATTTAGGATGTTCTTGTAAAAAACGTGTATTGTA
AGAAGCTTATAGACATTTCAGAATCTTCGCAGTGCCGTGTTCTTCGTGAA
CTATGATCAGAGGATGTGGAAATTGACTAAAAAGAATCGACATTCATTTC
TTTAAAATATCAAAGTAGTTTGAAGTAGAGCTGATAGTATAATGTTTAAA
AAAGGACTTGGTTTCTTCGCATTAACCACTAGCCCTGATTGTTTTTTAAG
TCAAAAGCACACTGTTTGTCAACAACCAAATTGTGGATGCTCAGGGGGGC
GCGGTTCTACTGTGAAAGTGATAGGGCCACTGACTAAGGAGGCGTCATCA
TCGTTGGAGCCAACGGACGAAAACTTTTGAATTTTAACCCTTCTAGATCT
TCTAAAACAGGTCTTTTTTTAAGGTTATTAAAAAGAATTTAGCTTGATTA
GTAAATTTTCTTTTTGCTTTGAAAAAATGTGGTCGGGCCAAGGCTCGACT
GACACCCCCCTCCACCCGCTGCTGCGGCGCTTGATGCTTTTCCATTACTC
TCTTCCAAGCAAAAGTTATTACACATTGTGAAGTTTCAGCACCATACGGG
AGAGACAGTTTTTATGAAAATATATACAATCAATGCTTTCTAATTCGACA
TTCTTCCATCCCACTCCATTAGTCGGTAATATTGAAAGTTACCGTCAACA
AGAAACTCTCATAAACGACACTTCTATCCGATACGTTCCGACCATGCTCA
GTGAAAATCCAATTCCCTTCGATAATCTCTTTAGAGAGCGTCAACTGTAA
AATTCTGGAAAGGTTTGTTTCATCGTTTTCTAATGGTTTCTTTTTTAATT
TTTCAGAATAGATTAATGGTCCACGAGGCAAAACAAGTTGAATCCAGAAG
TTGGGATTTCGAGAAAAGTGATCCGAGGGTTGAAGATCTTGTCAAGAAAA
TCAAGGAATTCAAATTGCATTTTGACAAAGACCGATCACAGGCTAAAAAG
AGGATGATTACAGGACATAAAGAAGCAAGCCGGTTGAAATTGAAATGCGT
TCAAGAACAAAATAAACACGTGTTGAAGTATCTTGATAGAGATTGGCAAC
GAAAAATTGAGGTAAATTATCATGTGTTTTTCAATATAATATATTTTCAA
TGCCAAGCTAATACCTAGTCCCTTCTTTTATGATATGATGCAGGTTTGTA
CGATAAGTAAGGCTCGCGGTGGCGAAAATTTGAGAATTCCATTTCTTTAT
TTGTCTACCGGGTTGGCATCACTTACCCGTGATCCGCCTCTTCAGTTGCT
GAGCATCAATCAGAGAGGCATCAAGTACCATTTTGGGAGATAATTTGGCT
GGGCCCACTTTACGCACCGTAGCTGGATGCTCTACCTTCATTCTATGACC
GCTTTAATTACTTACAAAACTGCGTAAAATGTTTGCCCTCAGTTCATCAT
ACGTTTGACCATTGATTGATTTGACCTTTCTAGGACTCTTGGAGACGAAT
TGAATCTCAATTGTTGTATATGCATGAAAAGGAAGTCAAGGAGAAGAACG
AAAAAGAAGAAAAAATTCGTCAAAACAAATTGAACGCTAGACAAAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003451XLOC_003451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006063-exon-sc0000062-1575043694:298113..298381TCONS_00006063-exon-sc0000062-1575043694:298113..298381Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1575043694:297608..297795TCONS_00006063-exon-sc0000062-1575043694:297608..297795Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1575043694:296371..296625TCONS_00006063-exon-sc0000062-1575043694:296371..296625Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1575043694:295882..295998TCONS_00006063-exon-sc0000062-1575043694:295882..295998Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1510915933:298113..298381TCONS_00006063-exon-sc0000062-1510915933:298113..298381Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1510915933:297608..297795TCONS_00006063-exon-sc0000062-1510915933:297608..297795Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1510915933:296371..296625TCONS_00006063-exon-sc0000062-1510915933:296371..296625Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1510915933:295882..295998TCONS_00006063-exon-sc0000062-1510915933:295882..295998Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1491911889:298113..298381TCONS_00006063-exon-sc0000062-1491911889:298113..298381Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1491911889:297608..297795TCONS_00006063-exon-sc0000062-1491911889:297608..297795Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1491911889:296371..296625TCONS_00006063-exon-sc0000062-1491911889:296371..296625Clytia hemisphaericaexon
TCONS_00006063-exon-sc0000062-1491911889:295882..295998TCONS_00006063-exon-sc0000062-1491911889:295882..295998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:295882..298381 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0572222	0.651007	0.172773	0	59.7532	53.0108	26.9505	25.047	7.9563	9.85517	7.45929	8.58737	0	0	0.0649853	0.0348696	0	0.0293529	0.993531	0.0636526	0.276628	0	0.000416291	1.59064	2.98993	0.767634	2.14465	2.59587	0.0423414	0.754936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006063 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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