TCONS_00061021 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061021
Unique NameTCONS_00061021
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061021 ID=TCONS_00061021|Name=TCONS_00061021|organism=Clytia hemisphaerica|type=transcript|length=642bp
GATTTAAAAAGATAttgttgatttatttttttttgtaagaagaAGTGATG
CttgattgaaaatataaaaatggaCATCTAACACGTGAAAGCCTACCACA
TTTTTTATTGCAGtctaaacaaagatttaaatgTACAAAGTTAGCGAAAA
TGTATCGTACTTTAGGCTTAGTTTACATTTTATAACTTAATGACTGTCAT
TAAATGTTAATCGtgcgttcttataaaaaaatacagcaAAGTTTAATCAA
TAGGCTGCATTCATTAAATGAGTGAGGTATCTATCAATAAAATAACTCAG
TTGGAGGTTTATGACAAATACAATTAAAGTTTTGTATGTAGAGGAGGAGT
GACTGTATAAAAGATCctttcaaaacattgaaatagcTATACAAGGGTCA
ATCAGATTCAGTGGGAAAAGGATAGCccagggtccacttaaagctttttt
gatAGACTGAATTTCTCGATTACTGGCCCGGCCATGATATACGGTAGTTC
tccaattttgagcttttgtttAGGCGGCCGTAAAACAGTCCACCAGAATC
TAATTGTTTTTGGGTGGCAAAAATAGGATGAGGCAAagtttaatatttga
aaatgaagggTTTACAAATTTGTTActttcgggtacctaata
Run BLAST on NCBI

transcript from alignment at scaffold_352:81128..81769

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061021 ID=TCONS_00061021|Name=TCONS_00061021|organism=Clytia hemisphaerica|type=transcript|length=642bp|location=Sequence derived from alignment at scaffold_352:81128..81769 (Clytia hemisphaerica)
tattaggtacccgaaagTAACAAATTTGTAAAcccttcattttcaaatat
taaactTTGCCTCATCCTATTTTTGCCACCCAAAAACAATTAGATTCTGG
TGGACTGTTTTACGGCCGCCTaaacaaaagctcaaaattggaGAACTACC
GTATATCATGGCCGGGCCAGTAATCGAGAAATTCAGTCTatcaaaaaagc
tttaagtggaccctggGCTATCCTTTTCCCACTGAATCTGATTGACCCTT
GTATAgctatttcaatgttttgaaagGATCTTTTATACAGTCACTCCTCC
TCTACATACAAAACTTTAATTGTATTTGTCATAAACCTCCAACTGAGTTA
TTTTATTGATAGATACCTCACTCATTTAATGAATGCAGCCTATTGATTAA
ACTTtgctgtatttttttataagaacgcaCGATTAACATTTAATGACAGT
CATTAAGTTATAAAATGTAAACTAAGCCTAAAGTACGATACATTTTCGCT
AACTTTGTAcatttaaatctttgtttagaCTGCAATAAAAAATGTGGTAG
GCTTTCACGTGTTAGATGtccatttttatattttcaatcaaGCATCACTt
cttcttacaaaaaaaaataaatcaacaaTATCTTTTTAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038305XLOC_038305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061021-exon-scaffold_352-1491911889:81128..81769TCONS_00061021-exon-scaffold_352-1491911889:81128..81769Clytia hemisphaericaexon
TCONS_00061021-exon-scaffold_352-1510915933:81128..81769TCONS_00061021-exon-scaffold_352-1510915933:81128..81769Clytia hemisphaericaexon
TCONS_00061021-exon-scaffold_352-1575043694:81128..81769TCONS_00061021-exon-scaffold_352-1575043694:81128..81769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_352supercontigscaffold_352:81128..81769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.159799	0.185541	0.181523	0.552468	0.785822	1.47476	1.0848	0.759493	0.513139	0.166022	0.545681	0.708399	0.962042	0.232626	0.0998574	0.30754	0.0630438	0.0870984	0.364569	0.158438	0.927368	0.0939448	0	0.263909	0.471065	0.449395	0.959213	0.272824	0.185309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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