TCONS_00060843 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060843
Unique NameTCONS_00060843
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060843 ID=TCONS_00060843|Name=TCONS_00060843|organism=Clytia hemisphaerica|type=transcript|length=1593bp
gcaaaatcaaaacaaacttgaacTGCAAAATTTTTTTAGTTTGTGAGATA
TTTTACTTTTCACCGgtctttcatcttcattttattttaccaTAGACTTA
CACATCATTTGATTGTATTGCCCTGTTTTCCATTCAATTTAAAGATAAGT
TATTAACAATGGAAGCTTAAGCCCCTTGATATTCCTTGAGACTTGGCACT
TCTTGTCTTGTATTGCAATTGGTAAATTGCTTCATTGTATAGATAATCaa
attgtattttttcttttttagatacgCTATTTCAGCTTAAGTTTGCATCC
AAACAATTAGAAAGAGCTTCCAAGAAGTGTGAGAAAGAGGAAAAAGCTCA
ACAAGCCAAAATTAAAAAGGCTATGCAACAAAAGAATATAGAGGGAGCAA
GGATATATGCTGAGAATGCAATTCGTAAGAAGAACGAATCTCTCAACTAT
TTAAGAATGGCATCAAGAGTAGATGCCGTTGCATCACGTGTTCAAACAGG
TGTCATGATGAAAAGTttgACAAAGACTATGGGGAGCGTTGTTAAAGGGC
TAGATAAAGCATTGTCTTCCATGGACCTCGGAAAGATTTCGGCCATTATG
GAGAAATTTGAGAAGCAATCGGAACACCTAGACGTTCATACATCTGTGAT
GGACGACACTATGGGAGCAGCTACCACTTTAAGTACGCCGCAAAACCAAG
TTGATTCATTGATACAACAAGTGGCTGACGAGAACGGGCTAGAGGTCATG
GACCAAATGTCCGAATTACAGCCTGGTACCTCAACTCTCGCgtctacatc
atcaaaagaagcAGATCATGGAAGTAAAGATTCAGAGCTAGATAAAAGGC
TTGCCGCACTGAGGAACTGagagattattttttggttTCAAAAGATGTCT
TTTAGcgtgattttgcacaaagttgGGCAACGCCTTTGGTTAACTTCTTC
ACTTAGAAACACAGTACACCATTCATTTGTCTTTGATCCATCAGACTGTT
CGACTGTTATTGAATTAGACTTCACATtacaaatatttaattttgagtAC
TGTAATTGTAAAAAATTTACACTTTTAAACAACATTGATAATgctattcg
aacttctattattggAATCtccctgtaattcgaacaaatatgATTCCccg
tttgagttcgaattagcgagagtaaACTGTATAAAAAGTTAGGTCCGGAG
AACAACAACTCGATTTTGTGATAAATTCTGTGCAAACAGACCTTGACAAA
TATTATGTACCcgaaaggaagaaattttgacggaaAAAATCTAGCGGATC
TGTCCGAATAAGTTCccgctaaatttaatttttcaagacattcgtcaaat
taaattctctcttaaaaaaactttttcagcccTCCCCAAAATTTaattcc
cgtcaaaatttcttcacGTTTGGGTCAGTTTCTGAACGGTTGAGTTCTTC
CAATAACGTTACGTTTCAATGCGTGCTCTTGCCATTTGAAAGAACCatga
aaaatattgtcaaaGAGGTTACAGTATTTGTAAAATTTCGTTTATTCAAT
TCCGATAAccaagtttgaaaataaaaatgagccAATATTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00060843-protein

>TCONS_00060843-protein ID=TCONS_00060843-protein|Name=TCONS_00060843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MQQKNIEGARIYAENAIRKKNESLNYLRMASRVDAVASRVQTGVMMKSLT
KTMGSVVKGLDKALSSMDLGKISAIMEKFEKQSEHLDVHTSVMDDTMGAA
TTLSTPQNQVDSLIQQVADENGLEVMDQMSELQPGTSTLASTSSKEADHG
SKDSELDKRLAALRN
Run BLAST on NCBI

transcript from alignment at scaffold_349:268029..280095-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060843 ID=TCONS_00060843|Name=TCONS_00060843|organism=Clytia hemisphaerica|type=transcript|length=12067bp|location=Sequence derived from alignment at scaffold_349:268029..280095- (Clytia hemisphaerica)
GCAAAATCAAAACAAACTTGAACTGCAAAATTTTTTTAGTTTGTGAGATA
TTTTACTTTTCACCGGTCTTTCATCTTCATTTTATTTTACCATAGACTTA
CACATCATTTGATTGTATTGCCCTGTTTTCCATTCAATTTAAAGATAAGT
TATTAACAATGGAAGGTATGATACATCTTAAAACTTTTTGTTCATTGTAT
TTAGGTTGATTATTTTACCAGGATTACCGAATCAATCGAACTTAATGGAA
GCCAATCGAATCATTGATTTTCGATTAGCCGAATTGATCGAACGCCAATC
GAATTTCACATCTTTTTATTATTGGATTCGATTACCATTCGATTAGTTTC
GATTAGCTTCGATTGCTAATGTTGTTCGTTCGATCAATTCGATTTATGTT
CGATTGGCATTCGATCAAATTTTGTTCCGGTTTTTTTGTAATTCCGATTT
TCGTGGTTCCGTATTTCCTCCATACCACCGCCCTGTTTTAAGCGTCTCCC
TTCTTAATATAAGAGCTGCACTGTAATCTCAAGTTTCGAAATAAGCGCCT
CCCCCAATCGGCAATAAGCCCCGCGCCATCCAATAACCGCCGGATTGATT
GAGTTCGGCTCGCGTATTACGTGGGAACCAACCCCACAGAACTTCCTCAG
TAGTAATAATTAAAGACACTCCAGAAATATAAATAAAATCTTAAGTTCGA
AGTTAGCGCTGAAATAGGATGCGAACAGTATTTCGGAATTGCGGAATTCA
ACCTTGTTTTCTTCACAATTTTGGGAATCGGGCAAAATTTCTTCGGTATT
TCAGAATTCTGATATTTTTTCGGTATCGGAAATCCATGAATTTTTGCTTC
CAAATATTGGTATCATAAGTTTTTTATCCCCCTCTTTCGGAATTCATTAC
ATACATGAGAAATCAAAAATGAAACATTAGTCGAAACGAGGAAAAATACC
CCAAAAAATCGGTATCAGAGTGGCGGGAATTTTTAAAACTTGGGCAAAAA
CATTCGGTATTTCGGAAATCGCAAACCCCTTATTCATTTGACAACGCAAT
AACGACAAATTGACGTTATCCTCTGACCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTCCGTACTTGGTTGTACCCGTGCG
TGTATGTGTTCTTTTAACTAATGACCTTTATTTAAAAAGAAATTAAAAGC
TCCACTTGGCGCTAGGTTCGTGCCGTGCTTTAGGCGGACCACCTTCTTTG
CCCACTTGTGCGATGTGGTTCGCTCGATCGCGCAAACAATGAAAATATGA
TGTAATGATATCATAGCGCGAACCAATGGGATTATGCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCCATTCAGGGTCA
CTTTTTTCGCAAATTTCGAGTCCCACGTAGGGTCCATTTTTCGAACCTCA
GCGGAGCACCCCCGTCAGTCGACAAGGGTAGTACTCCCCCCGGATATGGA
CGGCTCCCCTTACACCCCCCAGTGGGCTCCTTTAAATCTCGTGTTAAGCT
GGATCAATTTTTCTTTCAAATGGGTTAGGGCCTAAGATGGCGGTGATTTG
AGGAAACAAGGGAGTTAGTTCGCTAACTTTTAGGTCCTCTTGCGATCGAC
CTTATATAAAGTAATCAGGATCTGCTCAAAGATTTCCCTTCTTTTGGTGG
GAAGGGAATTACATGGTGGTGTTACAAAAAATCTTCCAAATTTAGCCCCG
CAAAATTTAAACTTTTTGAAGTAAAATCGAAGTTGATCGAACGGTAATCA
AAGTTGATTGAACGTTAATCGAAGCTCGTCAAACTCAATCGAATCCAATT
GAATTTCACATGTTTTTCGGTTTCGATTAGAATTCGATTGGCGTTCGATC
AATTCGGCTAATCGAAAATCAATCATTCGATTGGATTCGAGTAAATTCGA
TTAATTCGATTGGTTCGATTGGCAATTGAACGTTCGATTGACATCCCCTG
GGTTACATCAATATGCCAAAAACATTTTGTTCAACCACCTTCACTTCAAG
ATAGGCCACCATAGAATGAACTTCCTTTTATAGGATGAACCATATTCAGC
CTTGCACTCCATCACAGAGCCTATTTGAGATATTTTACTAACTAGCCAAG
AGAAAAATTTTAAACCTTTATTATTTGAATGCATGCCTTTATAATACTCA
AATATAAAAAAATTAAACAATTTTAACTTGGTCATTAGTCAAAAAAGTCA
TTAAAATTGATTAGCCTCTGCGATGGAGTGCAAGGCTGAGGGCCACATGT
TTTCTTTTATTTTTTGTGTTGTCCTTGCAGATTTTGGAGAACGCGACAGC
CTATTGAATAACTAATTACTCTACAACAGTTACCTAGATAATTTGGCACG
TTTTTATTGGCTGAGGGAAAGTAATGTATGTGGAGTAATTTGTTATTCAA
TAGGCCGTCTCGTTCTCCAAGACAACTACCGTCAACTGCTCTAACTTGGG
ACTATCTGACAAAACATGGGACGGTAATTCGGCCACCATTTCACCGAACT
TCCAAAGTCATTTTATTTGAGTTAATGAACGGCGTATTAAAAAATACAAG
ATTTCTCATTCGATTTTACAGTAAGTGAAAATACAGTCCAGATATGCAAC
AGTCCCATGTTTCGACCAATCATCCCCAGTTTAGAGCAGTTGACGGTATT
GATAGTTGCAGTAAACATTGCAGTTTATATCCCTGACTGCAGATTTCGTC
ATATTTCATCTTTTTCCCAAATATATATTCTGTTAGCCATAATTTTTTTC
AGAATGAAATTTTTGTTAGCTCATAGGATTTTTGTATCTAATTATATTGT
TTGATTTTAGCTTAAGCCCCTTGATATTCCTTGAGACTTGGCACTTCTTG
TCTTGTATTGCAATTGGTAAATTGCTTCATTGTATAGATAATCAAATTGT
ATTTTTTCTTTTTTAGATACGCTATTTCAGCTTAAGGTAAGAATTTTCTT
TGATCTATTATTCTTGAGCTATCTACGTAATCTATACTATTGTATAGAAT
GAAAAGTATTGATAGGTATATGCCTAAATATGATGTTCTTGGGGCTACTG
TACATCCAAAAAGCCTCCATAAGGCAGAAGTAAGCCACTTTTTTGTAGGC
CAAATAATTTTAATTGCTGAAATCAAACACTTCTGGTACAATATTTTGAA
TCCTCGAAGTTATTCATAACATCTTTCCCTTGGAAGTCCTGTGCAGTTTT
TATTTCTTTATTCTTCCAGAAAAATGTTTGCGATAGTTGGGGGTGTAAAG
TCCTCAAGGCTCTACAAAAACTTAGGGTGGTTGACCCTATGGGCATCTTT
TACATTGAATTCTTATAAGGGAAAGAAAAGGAAAGTTACTCCATCTAACC
TTGAAACTCCAAATCAGATTGAAACTGAAGAACTTAAGTCAAACTAAACT
TAATTAAAGGTCTGTTGTGAAAAGTTATGATTAATAAGAATTGAAGAAAT
ATAGCTTTTTTGTAAACTCCATTTTTTTTATTTTATGCCTTGAAAATTTT
CCGTTCAAAAGTTATGACGGCTCAAAAAATTTTGATGGTGTCATCACAAG
CCTTTCCACAGGCTAAACAGAAAAAGCTCAACCAGCCAGCTGACTGATTT
ATGATGTTTTTTATATGGATTCTTATCAGAATTGAGCGCTCCTTCTGATG
GTTTTACCCAAACAGCATTTGAAGCTTTATGACGTGCCAAATATTCCAAA
TTTATTTTTCACTGCCTTGAAAATATTGATTTAAAATATTGGGTAAAAAG
GTCATCTGTGCCAAATTTCCTAACTACTGTGTGAAGTAATGTAGCCTAAA
TGTGATAACATGCATGGCATTTTTCAGAAAAGAAATATATAATGATTATT
TTTTTCTCCCCTGTGCAATTCTAGTTTGCATCCAAACAATTAGAAAGAGC
TTCCNACATGCATGGCATTTTTCAGAAAAGAAATATATAATAATTGTTTT
TTTCTCCCCTGTGCAATTCTAGTTTGCATCCAAACAATTAGAAAGAGCTT
CCAAGAAGTGTGAGAAAGAGGAAAAAGCTCAACAAGCCAAAATTAAAAAG
GTATTGTGTATTTCTGTATTTATGCTTTCATAACTTGTTCTTAACATTTT
GGCAATCGAAGCCTCGTGTTCTTATATAGTTTGTTTACCTGTTTAGCTTT
AAGATGCTGTTCATTTAACCTTGCTGTTTAATCTTTACTCATAAAGCGTG
TAAAATGTATTCTTAGGTTCCAAATAAACTGGGGGGGGCTTGAATAAGCA
GGGGGGGGTTTGGAAAATTTCGAGATTTTAATAAACAAGGGGACCTAATT
GCCGGGGGGTTGGAAATTGTACCTCTGAAAACCCAAAAATAAGGCTAAAA
TAAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCTTTGACAGCTGAAAAT
ATTCTTAAAAATTAATAAACGAGGGGTCCTAATAAGATCCGGGGGGTTGG
AAAATTTTCGAAAAATTAACAAGCGGGGGGGCGTTTATTTGGAACCTAAG
AGTAAGTCATTTTTATTCGAAATCTAATCACGAAATTTCAAAAAGCCCCT
CTCCCTTGAATATAATAGCCTGTAAACCAATCAACCCCTCCCAAATCGAA
AAATATAATGAAACAAAATGGAAGTAATAAAATCGCAATTTTAGCCCGAA
TTTTATATTCTGAAAAACGTTAAAATAACCAAAATTGTCAATATCATTTC
GACGGTGATTGTAGCGTTGGACAATTTTTTATAAGAATGAAGTATATAAG
AACATAAAACTTCAATGGCTAAAATATTAAGAACAAGTTGAGAACATTTA
AAGGCTTTGCGAACATACACACCCGACCTTTAAAAAAAATGAACAAAAAT
ATTCACAAAATGGTGATCCAAAGGCTTCAAAAATGTTGGATATTCTTATA
AAAAACATGTATGTCTCTTTTAAATATTAGGCTATGCAACAAAAGAATAT
AGAGGGAGCAAGGATATATGCTGAGAATGCAATTCGTAAGAAGAACGAAT
CTCTCAACTATTTAAGAATGGCATCAAGAGTAGATGCCGTTGCATCACGT
GTTCAAACAGGTGTCATGATGAAAAGTGTAAGTTTGTTATTGTTTTTCAT
TCACAGCACAGCCCAAAAAAACCGGTCATTATTGTATTTGTTAAACGTTT
CCTTCAGCTTCGATTAATTCTTCGTGCTTTATCCAGAAAAAGTAGAGAAA
AAAACGAGAAAACAAGCGTAAAGAGATCAAAAAGATCAAAAGATCATGTT
TTAAATTCTGACTTCAAAAATGAAAAATGAGACAAATGATGTCAACGCAT
AGTGTTCATTTTCCTTTGAAAAAACTGACGTCACAATGAATTTTCCTAAC
GACGGGCAACTCTGTGCAGTGTAGGCCCGTTGTCATGCGAAAAGAACCAA
TTAGATTGCGCAAAAAGCCGTGTAGCTCGCTTCAAAAAAGTAACTGGTTA
ACAAACGATCTTTTCCTTGAAGCTTTTACATGAAAAACTTACATACGGTA
AGTATGAGAAAATTTGGACTAGACGTTAAAAAGTAAATCATTCTTCTCGT
TTTTTTTTCATTTCAGTTGACAAAGACTATGGGGAGCGTTGTTAAAGGGC
TAGATAAAGCATTGTCTTCCATGGACCTCGGAAAGGTAGGTTTTTGATTT
CAACCTTAAGGGGTCTCTTTGGCTCCTCGAGATTATCCGCATATAAATAA
ATAGCAGTTCGAATGGTTATGAATTAAAAACACTTTCTATTTTAAGATTT
ACCATTTAAGATATTTTCATGGGCACACTGAATTTTATTTACAATAATTT
GTAAGTTTTCGTTCATTTTTTTACAATTTACAGGGTAATTTACAATTTAC
ATGGTTTGTTGTTTTAATATGAAACAAATAAACACAAAAACTCCTAGTTA
TGCTTTTATAAACTTATTTCAAAGTTTTAGGAACTTAAAAAAGTTAAAAG
TTAAAGAAAAAACATTACTTTTAGCTTTATCACAAGCTATTTAGCAATAG
CTCGTTTCGATTGAATGTTTCGGATTTTTTTCGCTCTGTTCCTCTTTCTC
CTATTCTGTTCTTACTCCAACACATCAATACTTCTTTAAGTTTCCTTCTC
GCTCTACTGTTCGTCGTCATGTATACTAACGCATTCCCACTACTGTTCAA
ATTGGATAGCAACCGTAAAGCATACATGAGTAGATTGTGGATCTTTCACA
TCCATGTAAGAGGATGGTGGGAAATGCGTTATATGATGTCCTTAGGAGTA
TTCAGCAAGTGCTTGTTTCGTTTGATTGTGTAGGATTCTGCTTATGTTCT
GCCACTTTACTTTCTCCTATTTTATTCTTACGCCAACACATCAATACTTC
TTTAAGTTGCCGTCTCGCTCTGCTGTTTGTCGTCATGTATACTAAGGCGT
TCCCAGTACTGTTCAAATTGGATAGCAACAGTAAAGCATACATGAGTAGA
ATGGAGCTACTTTTACCGAATTTCCGTTCAAAAGGCTTCATAACTGGCAG
AAATAAGATGATGGGTGCATAACATATGGTGACAAGAATCAGGAAAGCAG
AGGCTAGTTTGGTCATGCTCGCAGTGGAAGCCGAGATACGTTTTGATTGC
TTGCGATGGCTTCTCAACTTTATAATTGAGATGATGTACAGGACTAAGGC
TAACCCAACAAATAACAGGTTAGCTGGTGATGAGTATCTCGCACCACCGT
TTTGTCCGAATAAAGCTGGTCCGAATGTGGTGATCACTGCAGCATAAAAT
GCGAAAAAGATGTAGACGGCAAACAGTAGGTTATGTCGTGTCGCCGTGAT
GATTGTCGTATAATGGGGTAGCAGCTTGACGTGTAGGAATCTGTCTAAAG
CCATGAACATGACAAGATAACATGATTGATAAATGAAGATGTGTGGGAAG
AGTAAAAGCATTCTCCTTTGGGAACATACCAGATGTTCTGTATATAGAAT
GAAGATGATTTGGGTAATCGAGGCGATGACAGCTTGTAGGATATCACATA
CTGAGATGATGAAAACTAAACGGAGCGAGCGTTTTTTGTAATGGCCTGTC
AAGACGTTGATATAACTTGATAAAGTGTTCAGCACTGTATTGACTACAAT
CATGATTACATAACATGCCACCAGTATGTATCGTGCTTGGTTGGACACGT
ATACGATGTTATCGTAATTGGAATAACAGTTTAAGAAGATGGTAGCTGTT
GATGTGAGGTTGTTGGTCGTCGTAATCGATGGTGGTGCTTTTAAAACAGA
CTGGTTCATGGTTGAGCCGGTTGAAAATCTGAAACAAAAAAATAAATTTT
GATGAATATTTCTCCCCGTAACTGTGTTGTGGTTTGGGTGCGGAAATTTA
GTTCCTCGAGTTCAAATTCTGTAAAAATCCCTTGAAAACGAAAGTTTTCC
GACAGAAAGTGGATGTTGTCCGTAGAAAAACGCCAGTTTCTTTCTGTAAA
AATATTTCATTGAGGTGCTCCATTGCGAGATGTTGTTGATGCTTTAAGCT
TCTTTACAAAATATATAACATTCTTGATTGAAAAGTTTGTCCCGCAAAAT
ACATATTTAATTGAGTCTAAGATTACACCTTTCAAATCAAAAATTGGATA
CATACCTTTTTGTGGCGTTCCAAAATTTGATTTTTCACCCTAATCTTCTA
TAAAAAACTATCTTACTCTGGTTGTAGACCCTTTTCCGCAAAGTATATTT
TGGTACACGCCTATTGAATATTTGATGTGAGTTTTCCACCTGAAAGATAT
CTCCTTTATATACACTCCACGCCATCTACGCCACAAAACATCTGCTCTTC
TTCTTTGTAGCACTTTAGGTTAAAGTGTATTACATGGTGTTTTTTTATAA
GAACATCCAAAATTTCTTGAAGCTTTCGGATGTAATCAACTTTTTTAGTT
TTAAGCCTTATTCTTAACGGTTTCTTATTTTCATCGGTTTTTTTTTAGTA
TTTTTGTCCATTTTTCTGAGAAAATTCTTTTAGAGACTCCAAAGCCTGAT
AATGTTCTTAACTTGTTCTCAATATTTTGGCCCTCGAAGCCTTTTGTTCT
TATATAGTTTGTTCTTATAAAGAAATGTGTATACACAATGTTTCCGACCC
ATCCCCCGTATCGACCAGTGTGTTGAGTCATATTATTATTACTTACGAGC
GTTTGTTTTTAAAGTATAAAATATTCTAATAAACCTTCTTTTATAAAAAT
ATTTTTACTTTATGATTTCAAACAACTGGTCAAGATGATTTACCGCAAAA
ACATGACAAAATTCTGTAAATTATATAATATACCTAGAATACTACGCAAA
AGATTGAAGCTAAATATTTTGAGCGTCTCAAAAACGTACATTTCACTTTA
TCTTAAAAATGTTTAAATTTAAAATTTAGGATTATAAATCTAACTTTCAA
ACTTACTAAACAATCAGAGAATAATTTTCAATTTCCGCGACTCGCTCTAT
CCATTTTATGTAATCAATTTTGTGCAATTTCACAGTATATACTACAAAAA
AGTGTTCAAATATTAAGGACGCGTGTACGTATACGTGTACGCCTCAAGTG
GCTCCGCCCGCTTAAACAAAAAATAGGAAAGGTTAAAGGGTTGAAAAATC
GAGTTATTTTATTCTTACGAACAGCAAAATGCTTACTTTATTATGAATTA
TTTTTTTATAATTCATTAGATTTCGGCCATTATGGAGAAATTTGAGAAGC
AATCGGAACACCTAGACGTTCATACATCTGTAAGTATTTTAATCATTTCT
TTCCGATTTTTGATTGGCTCACGGAAGAATCACGGACAATATATGCATAT
GTGGCTTTTCCAGAAACAAAATTTTCCTGTCATGTTGAAGGAATCTTCCT
GTTTGAATTATTGAGATGGTACTTTCCCTGTATTGTTGGCTCAACTTTTT
ATTGACCCTATGGAATTTCTAGTTTTTTTTCAGGGTCTTGTCACACCCTT
GCAAAAGGGTGGTAAACATTACCCCCCTTCGCCTTCAGAGGTTTACTGTG
CCCGTAAGAAAATTATGACCAGCTGTTATCGGGTTAGCACAAGAGTGATG
ACATCTTTTTGTTCACTTAGGTGATGGACGACACTATGGGAGCAGCTACC
ACTTTAAGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTGGC
TGACGAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCCTG
GTACCTCAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAAGT
AAAGATTCAGAGCTAGATAAAAGGTAAGTTTTGCTATAATAATATCAGTT
TATCTAAAAAGACCTTGCGAAACCTAGCCACCGTGTTATCAATGAAATTT
ACTCAAGTTTTGAAGTATTAAAAGATCTACAGCACCTGACCCCGAGAATG
TAGGTTTCTCATTTTTTAGCATGGTAGCCCTAACGATAGTTCAACTTCAT
AAAAAGTTGTTTCAGAGCAAAATGTTACATATTACTGATTATTTCTAGAC
ATAAAGTTTTAACTTGAATTGATTTTTTCAGGCGAAAATCTGAATCGAAG
TTAATTGGATACTACTCGAATTGAGACATTTTTTAAATAAATCCTCTCTA
AATGGAAATCTATTGGAATTAAGTTATGATGATATGGTATTTTCTTATTC
CTAATGAACTAAGGAAATGTGGAAAATAGTCCATTTCAATATTTATTGTT
CTAAATTAGATATTTTAACGAAAATGTTGTTAACCCTTTTGGGGTTAGTT
GACCTACAATTTGGGAGCCTTCATAACCCGACATAAAAAGTCTGTCAAAT
TATATAAAACTTTTTTGTTGTACTTTCATAACATGAAAGCATTACCTGAG
AGATGATTAATGTAATTAGAATTAACTAATATAATTTCTATCCCCCTTGG
GAATTTAGTAGAAATTTTTGACCCGATGTGGGAAAAGTTCCACCGGGGCT
GTGAGGCAGGGGTGTTGTTACATTTTAACACAGAATCTTCAACCTACAAA
ATAAAAACAACTTTCTTGTCTCTTCTTTTCGTCCTTTCTTTTACTTTTCG
TTATTTGTAGCACGATAAAATTAATATCTTTGTTAATTTTTTGTCAGAGT
ATATTTCTAAAGTATGAATTTCACTTAGAGAACAAAAATTTCCGATGAAT
ACTGAAATTTCGCTCTTAGCAACCGAATCTTTTCACCTACATTATGGGGG
TTAAAAAGCGAAAAAATCCAATTTTCAGAATGACAAAAGCTCTTTAGAAT
ATTTTTTTGGCATAAAATATTTCTAAAATTTCCTGTTATAATTAATTCAA
TCGAAAAAATATCAACATTTTACTATTACTAGATTTAAAGCCATAAAAAC
AAACCTACATTCTGGGGATTATAACGAAAATGGGAGTCAACTTCAAGGAC
CAAAAGAATGAGCTTATCTATCAAAAGTAATGAAACTAACCCCTGGGAAA
GGATTTTGGGAGTTCAAAATTTCGTTTAAACTATTCAATATTTTTTTAAA
TGCAAATCTACATCTCCCAGGTCTGATTCAATTTTCACCTACATTCTCGG
GGTCAGGTGCTGTATGTTTTAGGTAATTCGAAGAATGAGGAAAAGTTTTA
TCTCAACCTAAATTCAAATTGATGAATGAACTAAATATAACATACAACCG
CTTATCTCCTTAAATTTTAAATCGTTTAGCTAAACTTTGATTTTTATCTT
TGATTTTTATTTTCATCTACAGGCTTGCCGCACTGAGGAACTGAGAGATT
ATTTTTTGGTTTCAAAAGATGTCTTTTAGCGTGATTTTGCACAAAGTTGG
GCAACGCCTTTGGTTAACTTCTTCACTTAGAAACACAGTACACCATTCAT
TTGTCTTTGATCCATCAGACTGTTCGACTGTTATTGAATTAGACTTCACA
TTACAAATATTTAATTTTGAGTACTGTAATTGTAAAAAATTTACACTTTT
AAACAACATTGATAATGCTATTCGAACTTCTATTATTGGAATCTCCCTGT
AATTCGAACAAATATGATTCCCCGTTTGAGTTCGAATTAGCGAGAGTAAA
CTGTATAAAAAGTTAGGTCCGGAGAACAACAACTCGATTTTGTGATAAAT
TCTGTGCAAACAGACCTTGACAAATATTATGTACCCGAAAGGAAGAAATT
TTGACGGAAAAAATCTAGCGGATCTGTCCGAATAAGTTCCCGCTAAATTT
AATTTTTCAAGACATTCGTCAAATTAAATTCTCTCTTAAAAAAACTTTTT
CAGCCCTCCCCAAAATTTAATTCCCGTCAAAATTTCTTCACGTTTGGGTC
AGTTTCTGAACGGTTGAGTTCTTCCAATAACGTTACGTTTCAATGCGTGC
TCTTGCCATTTGAAAGAACCATGAAAAATATTGTCAAAGAGGTTACAGTA
TTTGTAAAATTTCGTTTATTCAATTCCGATAACCAAGTTTGAAAATAAAA
ATGAGCCAATATTTGTA

Coding sequence (CDS) from alignment at scaffold_349:268029..280095-

>TCONS_00060843 ID=TCONS_00060843|Name=TCONS_00060843|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_349:268029..280095- (Clytia hemisphaerica)
GCTTGCCGCACTGAGGAACTGAGTGATGGACGACACTATGGGAGCAGCTA
CCACTTTAAGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTG
GCTGACGAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCC
TGGTACCTCAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAA
GTAAAGATTCAGAGCTAGATAAAAGATTTCGGCCATTATGGAGAAATTTG
AGAAGCAATCGGAACACCTAGACGTTCATACATCTTTGACAAAGACTATG
GGGAGCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGG
AAAGATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATG
CAATTCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGA
GTAGATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGC
TTGCCGCACTGAGGAACTGAGTGATGGACGACACTATGGGAGCAGCTACC
ACTTTAAGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTGGC
TGACGAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCCTG
GTACCTCAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAAGT
AAAGATTCAGAGCTAGATAAAAGATTTCGGCCATTATGGAGAAATTTGAG
AAGCAATCGGAACACCTAGACGTTCATACATCTTTGACAAAGACTATGGG
GAGCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAA
AGATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCA
ATTCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGT
AGATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGCTT
GCCGCACTGAGGAACTGAGTGATGGACGACACTATGGGAGCAGCTACCAC
TTTAAGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTGGCTG
ACGAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCCTGGT
ACCTCAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAAGTAA
AGATTCAGAGCTAGATAAAAGATTTCGGCCATTATGGAGAAATTTGAGAA
GCAATCGGAACACCTAGACGTTCATACATCTTTGACAAAGACTATGGGGA
GCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAAAG
ATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAAT
TCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAG
ATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGCTTGC
CGCACTGAGGAACTGAGTGATGGACGACACTATGGGAGCAGCTACCACTT
TAAGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTGGCTGAC
GAGAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCCTGGTAC
CTCAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAAGTAAAG
ATTCAGAGCTAGATAAAAGATTTCGGCCATTATGGAGAAATTTGAGAAGC
AATCGGAACACCTAGACGTTCATACATCTTTGACAAAGACTATGGGGAGC
GTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAAAGAT
GCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAATTC
GTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAGAT
GCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGCTTGCCG
CACTGAGGAACTGAGTGATGGACGACACTATGGGAGCAGCTACCACTTTA
AGTACGCCGCAAAACCAAGTTGATTCATTGATACAACAAGTGGCTGACGA
GAACGGGCTAGAGGTCATGGACCAAATGTCCGAATTACAGCCTGGTACCT
CAACTCTCGCGTCTACATCATCAAAAGAAGCAGATCATGGAAGTAAAGAT
TCAGAGCTAGATAAAAGATTTCGGCCATTATGGAGAAATTTGAGAAGCAA
TCGGAACACCTAGACGTTCATACATCTTTGACAAAGACTATGGGGAGCGT
TGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAAAGATGC
AACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAATTCGT
AAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAGATGC
CGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038208XLOC_038208Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060843-exon-scaffold_349-1575043694:279931..280095TCONS_00060843-exon-scaffold_349-1575043694:279931..280095Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:276560..276685TCONS_00060843-exon-scaffold_349-1575043694:276560..276685Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:275446..275523TCONS_00060843-exon-scaffold_349-1575043694:275446..275523Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:274419..274565TCONS_00060843-exon-scaffold_349-1575043694:274419..274565Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:273861..273929TCONS_00060843-exon-scaffold_349-1575043694:273861..273929Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:270767..270826TCONS_00060843-exon-scaffold_349-1575043694:270767..270826Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:270223..270425TCONS_00060843-exon-scaffold_349-1575043694:270223..270425Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1575043694:268029..268773TCONS_00060843-exon-scaffold_349-1575043694:268029..268773Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:279931..280095TCONS_00060843-exon-scaffold_349-1510915933:279931..280095Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:276560..276685TCONS_00060843-exon-scaffold_349-1510915933:276560..276685Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:275446..275523TCONS_00060843-exon-scaffold_349-1510915933:275446..275523Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:274419..274565TCONS_00060843-exon-scaffold_349-1510915933:274419..274565Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:273861..273929TCONS_00060843-exon-scaffold_349-1510915933:273861..273929Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:270767..270826TCONS_00060843-exon-scaffold_349-1510915933:270767..270826Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:270223..270425TCONS_00060843-exon-scaffold_349-1510915933:270223..270425Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1510915933:268029..268773TCONS_00060843-exon-scaffold_349-1510915933:268029..268773Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:279931..280095TCONS_00060843-exon-scaffold_349-1491911889:279931..280095Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:276560..276685TCONS_00060843-exon-scaffold_349-1491911889:276560..276685Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:275446..275523TCONS_00060843-exon-scaffold_349-1491911889:275446..275523Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:274419..274565TCONS_00060843-exon-scaffold_349-1491911889:274419..274565Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:273861..273929TCONS_00060843-exon-scaffold_349-1491911889:273861..273929Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:270767..270826TCONS_00060843-exon-scaffold_349-1491911889:270767..270826Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:270223..270425TCONS_00060843-exon-scaffold_349-1491911889:270223..270425Clytia hemisphaericaexon
TCONS_00060843-exon-scaffold_349-1491911889:268029..268773TCONS_00060843-exon-scaffold_349-1491911889:268029..268773Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060843-proteinTCONS_00060843-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:268029..280095 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
86.5571	73.1526	92.7196	91.5569	14.9872	5.69379	13.1891	13.6337	37.6186	35.2469	52.8329	30.8969	33.5968	32.4749	25.7161	26.2121	28.9756	31.9025	30.2234	40.2902	44.6338	39.7365	46.1252	47.2555	6.1955	11.2635	40.7672	35.6702	34.396	32.6555
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
Blast
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BLAST of TCONS_00060843 vs. Swiss-Prot (Human)
Match: CHM1A (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 6.554e-71
Identity = 127/199 (63.82%), Postives = 165/199 (82.91%), Query Frame = 1 
Query:  271 DTLFQLKFASKQLXXXXXXXXXXXXXXXXXXXXXXXXXNIEGARIYAENAIRKKNESLNYLRMASRVDAVASRVQTGVMMKSLTKTMGSVVKGLDKALSSMDLGKISAIMEKFEKQSEHLDVHTSVMDDTMGAATTLSTPQNQVDSLIQQVADENGLEVMDQMSELQPGTSTLASTSSKEADHGSKDSELDKRLAALRN 867
            DTLFQLKF +KQLE+ +KK EK+ KA+QAK+KKA+ QKN+E AR+YAENAIRKKNE +N+LRMASRVDAVAS+VQT V MK +TK M  V K LDKALS+MDL K+S++M++FE+Q ++LDVHTSVM+D+M +ATTL+TPQ QVDSLI Q+A+ENGLEV+DQ+S+L  G S +  +S +     S++ +L +RLAALRN
Sbjct:    3 DTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVR-----SQEDQLSRRLAALRN 196
The following BLAST results are available for this feature:
BLAST of TCONS_00060843 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM1A6.554e-7163.82Charged multivesicular body protein 1a OS=Homo sap... [more]
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