TCONS_00060843-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060843-protein
Unique NameTCONS_00060843-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length165

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060843-protein ID=TCONS_00060843-protein|Name=TCONS_00060843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MQQKNIEGARIYAENAIRKKNESLNYLRMASRVDAVASRVQTGVMMKSLT
KTMGSVVKGLDKALSSMDLGKISAIMEKFEKQSEHLDVHTSVMDDTMGAA
TTLSTPQNQVDSLIQQVADENGLEVMDQMSELQPGTSTLASTSSKEADHG
SKDSELDKRLAALRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038208XLOC_038208Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060843TCONS_00060843Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005024Snf7 familyPFAMPF03357Snf7coord: 3..127
e-value: 2.5E-6
score: 27.1
NoneNo IPR availableGENE3D3.90.20.10coord: 4..163
e-value: 2.4E-4
score: 20.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..165

Blast
[Close]
BLAST of TCONS_00060843-protein vs. Swiss-Prot (Human)
Match: CHM1A (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.341e-73
Identity = 103/163 (63.19%), Postives = 134/163 (82.21%), Query Frame = 0 
Query:    3 QKNIEGARIYAENAIRKKNESLNYLRMASRVDAVASRVQTGVMMKSLTKTMGSVVKGLDKALSSMDLGKISAIMEKFEKQSEHLDVHTSVMDDTMGAATTLSTPQNQVDSLIQQVADENGLEVMDQMSELQPGTSTLASTSSKEADHGSKDSELDKRLAALRN 165
            QKN+E AR+YAENAIRKKNE +N+LRMASRVDAVAS+VQT V MK +TK M  V K LDKALS+MDL K+S++M++FE+Q ++LDVHTSVM+D+M +ATTL+TPQ QVDSLI Q+A+ENGLEV+DQ+S+L  G S +  +S +     S++ +L +RLAALRN
Sbjct:   39 QKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVR-----SQEDQLSRRLAALRN 196
The following BLAST results are available for this feature:
BLAST of TCONS_00060843-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHM1A5.341e-7363.19Charged multivesicular body protein 1a OS=Homo sap... [more]
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