TCONS_00060831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060831
Unique NameTCONS_00060831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060831 ID=TCONS_00060831|Name=TCONS_00060831|organism=Clytia hemisphaerica|type=transcript|length=638bp
cCGAGGATTATGGGATATGCCAgaGCAAACGAGGTGTTGTTAGCTGGGCG
TAAACTGACCGCCCAAGAAGCTTTTGATCGCGGTCTTGTCACTGATATCA
TACCACAAGGAGAATTCCGTGAATTCATTGCAGAAAAAACCAAATATCTC
GCTGGATTGCCACCTAAGAGTGTGATGTATTCAAAGGCTTTGAACCGATT
ACGCGAGAAGGAAACGTTAGAACGCGTCAACGAGGAAGAGTGCGTTCGAT
TAGAAGAACGGTGGCTTTCTGAAGAGTGCATGAACGCTGTCATGTCCTTC
CTGGCGAAAAGTTCTAAAATGTAAAGAAATGCAGTTGAAAATTCTCTTCT
TCTTGATATGCGTGAGTCAAGATGCTGTTATATTTTCTAACGGAATCAAC
CGAAAAAGCCGAATTTTTTACAGATTTTGTCAAATCCTggttttttcggg
tgtttccgttaGAAAAATACGCATATCGAGAATATGATTTGATACCAAAG
GAATTGGCATGTGAGCCGtatttgaagggacataaactaAAACCACATTG
TTCTTGCCTGTACTCTAAAGGTTTAAAAAGTTCTAGTTCCTTCTTTGTTA
GAAGCTTTATGAGGTGGCGTAAACGCACGACACTGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_349:110822..115111-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060831 ID=TCONS_00060831|Name=TCONS_00060831|organism=Clytia hemisphaerica|type=transcript|length=4290bp|location=Sequence derived from alignment at scaffold_349:110822..115111- (Clytia hemisphaerica)
CCGAGGATTATGGGATATGCCAGAGTATGTTTTCTTTGATCTCATTTCCT TATATAGTGGACTCTGTTATTTGAATCTTTTTATAATTCTCAGATTCTGT CAAGAAGCCTCAATCTGGAAATTCTATCTATTATACCAGAGTATGATTTC TTTGATATCATTTTCTCGGTTATAAAGTGGACTCACTATTTCGAACTTCT ATTATTCGAATCTTTTTATTATTCAAAATGATTCTCAGTTCCTGTCAGGG AGTCTCAATCTGGAAATTCTATCTATCATTCGAATCTACGTTGCTGTTAA GGCTCTAATGGCTTTAACACTTTAATGAAAAGTGTTGACTTTTTAACACC TGAATTATGTATGCCCGTTTTCTTTTTAGGCAAACGAGGTGTTGTTAGCT GGGCGTAAACTGACCGCCCAAGAAGCTTTTGATCGCGGTCTTGTCACTGA TATCATACCACAAGGAGAATTCCGTGAATTCATTGCAGAAAAAACCAAAT ATCTCGCTGGATTGCCACCTAAGGTAAATTAAGTGAAATTTTCCTTTGCT GTGTAGAATAGACCTTTTCATAAAATTACGTTAAGAACATCACTTGCCTC GTTTTGAAATTATTGCCATGGTTATTAACTCCCAGCGGATTTTATCAAAA CTACTTCCTATTCATAAAAAAATCATTTAATGTCTCAAGAGACATAATCA CCATGGTAATTATTTGAATACGTGGCAAGTGATGTTTATGACGTACTTAA GGCGTACAAACTTTCGCGAGTAGAAACTTTTGCGAGAACGAAAAATTTAC TTTCGCGAATTTAACGGAAAAATATTTTTCGCGAGCATAAACTTTCGCGA ATCAAGACGTAAAATTGAGAATTTTCACATGAAAAAATTTCTTAGAGGGA CAAATACTTCTTGGATTGGCTTGAAACATTTGTCCTTTGACTTATTAGTC TTTTAGTAGGCTAAAAAGTGCCATAAAAGTTACATTTTATTCAAAGTTTG AAGTTTTACAGATTTTCTATTTCGTCAAGAATTTTTGGCGAGCATAAACT TTCGCGAATGGCCCTTCCTATAATTTTTAAAGACATTTACTTTCGCGAAA AGGGCCAAAATTCGCGAAAGTTTCTGCTCGCCAAAGTTTGTACGCCTAAA GTATTGCGAGCCTGATACAGGGGTAGACACTTGCTTATAAAAACATGTAT GTGTCTTGGCAGTCTTGTTTACTATACATTACCTCGTAGAGAACTCTTGA AGAATATTTCAACTTATAACACCTAATACAGTGTATCCGGAACAAAGCGG TGGAACACGATTCATATAAACAAAAAATCTTGATAATTTATACCAATCTT AACCTTATGCTCATTTTGATGGCGCCTTTGTGAATGGAATGGTTATTGAT TGGACAAAGAAACTTCGATGCCATTTCAATCATTCTAAGCTCCAGTAGGC TCCAGTGACATAATGAGTTTAGAGGATTTAATTTTATATAAGATTTGTTT CCTTTTTTTTTTTGAGAGAGACACTGTGTATGTGTTTACCATTTTATAAG TCATTCTCGTTTTCAGTGGTCACCCAAAAAAATTACAATTTCTGGAAGAT TTTTACCTTGAAAAACTAGTATACCTTTTGCTAATCACGATGTCATATTG AATAATTTAAAAACTCCAGCCAATTCAAGCATCAAAACAATAAAACAAAA AACTTGGTACACGATTTAACTACATATTCCTCAGTGTTTAATTGTTTTGA TGCTGGAGTTTTGAATTATTCAACATGACAGCGTGATATGCCCTTTCATG AATTATTTTAAGTGAAACGACTGCCTCGTTTTGAAGCCATTGTTACCAAG GTGATTAAATCCCTTGAGTTTTCAAATGTCTAACAGTAGACTTCTTCAGT TGGGAATCATAATAGCATTATTTTAAAAACGAAGTAAGCGTTGTTCGTGA CGTAATTTGGTTCACCCAATGAATCATNTTTATTTTAAAAACGAGGTATG CGTTGTTCGTGACGTAATATGTCTATTAGCAAAAGGTTAGTTGGTTCACC CAATGAATCATTTTTTTTAATTCTTCCTTTACTGTCCTAAAGGACTTAAA GACTACTAGCTGTATGCGCAGCGTCGCACGCTGCGTGTCCCATTCCAGTG AATCACTACACATCTAAAAAATTCGAACGGCAGAAAGATAGCCACCGATT GATGATTTGATTTTGATTTTAGGAAGTAAAGGAGAAAGAAGATAACATTG CATTGTAATTTTTAACCACAATTAAATAATGGCTTAACAAAAGTATATTT TAGATCCTTTTAGCCATCGTGGCTATCCCATTGAGTTTCAAGCCCGGAGG GCTAGAGGTCAATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTA AAATATTTGCCGTATTTTTGATGACGGATTGAATCTAGCAATTCCTTTGT TTTCGAGTGATATTTTTTTTCGAAATTAAGTGGTAAATTTTAGTTTCAAT CTATCATTTGTGTAAAAACCAGGCGGGTCGCTCAAGACCGCGCAACTTTG GTAGGATTTGTTGGCTTCAAATCCTACCAAAGAGATTGACCTCTNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNAAAAAGACCAAAGGTCAAACCGGGCGGCAAAATATTATACAAAAATG TTTTGAAAAGTTTTGAAAGTGATAGGGAGCCGCTATTGTAAACAGAAAGT TTAGATTTTCAAAAACTTTTTACAAAATGTTGTAAACACACACGTTTAAG CGTATTAATATATAGAAGATTGACTTCCAAACCCGAAGGGCTAGACTCGA GACTCGTGGATGGGAAATGAAGCCACTTATCTCCCCTCCAGAACGCCCCC GCGTAGTTTTTACACAAACGCCGGATTGAAAGTAAAATCTATCGCAGTCC TCAAAAACAAAGGAACCGCTAGATACAATCCGTCGTCATTATTGCGGCGC GTTCTAGAAGCGTTCTGGATGGGAAATAAGTGGCTTCACTTTTTCCTGCC TGCGAAAGGTTAGAGATTTACTCTAGCCCTTCGGGCTTCAAACTCAATGT TATTTTCTTATTATCTACAGAGTGTGATGTATTCAAAGGCTTTGAACCGA TTACGCGAGAAGGAAACGTTAGAACGCGTCAACGAGGAAGAGTGCGTTCG ATTAGAAGAACGGTGGCTTTCTGAAGAGTGCATGAACGCTGTCATGTCCT TCCTGGCGAAAAGTTCTAAAATGTAAAGAAATGCAGTTGAAAATTCTCTT CTTCTTGATATGCGTGAGTCAAGATGCTGTTATATTTTCTAACGGAATCA ACCGAAAAAGCCGAATTTTTTACAGATTTTGTCAAATCCTGGTTTTTTCG GGTGTTTCCGTTAGAAAAATACGCATATCGAGAATATGATTTGATACCAA AGGAATTGGCATGTGAGCCGTATTTGAAGGGACATAAACTAAAACCACAT TGTTCTTGCCTGTACTCTAAAGGTTTAAAAAGTTCTAGTTCCTTCTTTGT TAGAAGCTTTATGAGGTGGCGTAAACGCACGACACTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038201XLOC_038201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060831-exon-scaffold_349-1575043694:115088..115111TCONS_00060831-exon-scaffold_349-1575043694:115088..115111Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1575043694:114589..114732TCONS_00060831-exon-scaffold_349-1575043694:114589..114732Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1575043694:110822..111291TCONS_00060831-exon-scaffold_349-1575043694:110822..111291Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1510915933:115088..115111TCONS_00060831-exon-scaffold_349-1510915933:115088..115111Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1510915933:114589..114732TCONS_00060831-exon-scaffold_349-1510915933:114589..114732Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1510915933:110822..111291TCONS_00060831-exon-scaffold_349-1510915933:110822..111291Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1491911889:115088..115111TCONS_00060831-exon-scaffold_349-1491911889:115088..115111Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1491911889:114589..114732TCONS_00060831-exon-scaffold_349-1491911889:114589..114732Clytia hemisphaericaexon
TCONS_00060831-exon-scaffold_349-1491911889:110822..111291TCONS_00060831-exon-scaffold_349-1491911889:110822..111291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:110822..115111 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600Expect = 5.19e-26 / Id = 47.66SequenceECI2
Match NameE-valueIdentityDescription
ECI25.195e-2647.66Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo... [more]
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