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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060766 ID=TCONS_00060766|Name=TCONS_00060766|organism=Clytia hemisphaerica|type=transcript|length=6969bpRun BLAST on NCBI protein sequence of TCONS_00060766-protein >TCONS_00060766-protein ID=TCONS_00060766-protein|Name=TCONS_00060766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1960bp MAYPAYEGDVMGKDPMLYLQVDKAQLMKEQAKGFDAKKWVWVPIKEGNKGRun BLAST on NCBI transcript from alignment at scaffold_349:39195..62356+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060766 ID=TCONS_00060766|Name=TCONS_00060766|organism=Clytia hemisphaerica|type=transcript|length=23162bp|location=Sequence derived from alignment at scaffold_349:39195..62356+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_349:39195..62356+ >TCONS_00060766 ID=TCONS_00060766|Name=TCONS_00060766|organism=Clytia hemisphaerica|type=CDS|length=147075bp|location=Sequence derived from alignment at scaffold_349:39195..62356+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060766 vs. Swiss-Prot (Human)
Match: MYH7 (Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5) HSP 1 Score: 1409.43 bits (3647), Expect = 0.000e+0 Identity = 878/1900 (46.21%), Postives = 1282/1900 (67.47%), Query Frame = 1
Query: 565 YLQVDKAQLMKEQAKGFDAKKWVWVPIKEGNKGYVAAQVKSASGDKVTVETQDGKSMEMLKEKCDQMNPPKYEKCSDMASLTYLNEASVLHNLAARYETGLIYTYSGLFCIAVNPYKRLPIYTDEVVKMYRGKRPSEMPPHVFAIVDTAYQDMLIEHDNQSMLITGESGAGKTENTKKVIQYIAKVAGV-EKKKEDEPPAGDGAKVKGALDEQVVQANPLLEAFGNAKTTRNNNSSRFGKFIRCHFSQTGKLAGADIEQYLLEKNRVVHQGSAERNYHIFYQLLYATTDEEVQKLCLLTRDAMNYNFLNKGVAFVDRIDDHAEYADLLTAVSVLGFSDEEKWSMFKIVASILNMGNMKFKQKPRDEQAEVVDPADGERVSYLLGIPVGEFHKSLVKPKVKVGTEYVNKGQNVSQVLYSVSGLSKAIFERMFLWIVQRVNKALDTKERRSYFIGVLDIAGFEIFEYNSFDQLCINLTNEKLQQFFNHHMFVLEQEEYKKEGIHWEFIDFGMDLEQTIDLIEKPMGIFAMLEEECIVPKATDQTYLQKLHKQHAGKNASYTKPTPKQAKQGGGDFILHHYAGSVGYSVPGWLEKNKDPINENSAQLFAKATDPLVRHLFQDY----NP-DVTGGRSRKGSAFQTVSYRHKEQLKNLLGTLMSTSPHFVRCIIPNENKCPGEIDGQLILHQLRCNGVLEGIRICRKGFPSRMLFQDFRQRYQILAASAIPSG-FVDGKVAGEKLIEALQLDQSEYRVGKTKVFFRAGIVGELEDMRDERLSKIISQFQAFCKGHLMRIEYKKMCDQRIGLAVIQRNVRKFLFLRNWTWWKLYTKVQPLLSIARAEDDMXXXXXXXXXXXXXXXXXXXXXXXMENELTDAIASKEKLFADLQAETDRLIATEXXXXXXXXXXXXXEASLNEALEKLESEEHSGEVLESKVAEAESKIDDLNNKADEMQTNIHRLEQEKTSRDKQIDALNEDISKQEEGIAXXXXXXXXXXXXXXXRTEQLQAAEDKCSSLNKAKNKVEGQLKDTEHSXXXXXXXXXXXXXXXXXXXXXXXXTRDQLAETEGNLKEAKDTVVXXXXXXXXXXXXXXGNENQI-KQLKKRIAELMAXXXXXXXXXXXXXXXXQKVELARKDLEAQIEEMNEQLESSSGATTAQVEVNKKREAENQRLRKEMDEQXXXXXXXXXXXKQKFNGALAESQDELDGVKKAKAKSDKERAALAAELEDVHGQLETSKKQKQSADKNNRSLEEQLNEVRSKVNDLEGSLADSESRCNKSAADNAALNVQLEEVEHKLGLTTKNLKTMEANFNDAKSNADSESKGKHDNHQKLQNAMGXXXXXXXXXXXXXXXXXXXXNKLSRANADAAQWKNKYDMEGASRVEELEDSKRKLSARVQXXXXXXXXXXXXXXXXXXVKNRMNXXXXXXXXXXXKAQAQASGLEKRQKKFDQQINEWKIKCDEVQADLDQSQRESRGFSTELLKVRTAHEDASEKYDALKKENRALTAELSSITDQLSEGGKSSAEVEKIRRKLGMXXXXXXXXXXXXXXXXXXXXGKFXXXXXXXXXXXXXXDRRASEKDEEMENMRKNHQRQMEALQNTINAEQRAKGDLQKNKKKYDSDVAELEAQLDGALRTNGDYXXXXXXXXXXXXEMQAMIDDESRGRDDMRDSASRSERRANDLAVQLDEARVALEQADRARKLADNEKSEFADRAAELQSMYNNIANAKRKAEGDYHALQXXXXXXXXXAKSGEEKAARAMAEVARLMAELNSAQDAASTADKSRAMLSKQCSDLQSRLEEAEAQGGKGLKNAIRKLESRIMELENDLDTEVRKSSDVIKTARKSEKKVKELQFAVDDEKKSAERAQDTADKLNQKMKKLRMQVEEAEQSASQWQSKYKKAAVDL 6240
YL+ + + ++ Q + FD KK V+VP + + +V A++ S G KVT ET+ GK++ + +++ Q NPPK++K DMA LT+L+E +VL+NL RY + +IYTYSGLFC+ VNPYK LP+YT EVV YRGK+ SE PPH+F+I D AYQ ML + +NQS+LITGESGAGKT NTK+VIQY A +A + ++ K+D+ P KG L++Q++QANP LEAFGNAKT RN+NSSRFGKFIR HF TGKLA ADIE YLLEK+RV+ Q AER+YHIFYQ+L + E+ + L+T + +Y F+++G V IDD E A VLGF+ EEK SM+K+ +I++ GNMKFK K R+EQAE + ++ +YL+G+ + K L P+VKVG EYV KGQNV QV+Y+ L+KA++ERMF W+V R+N L+TK+ R YFIGVLDIAGFEIF++NSF+QLCIN TNEKLQQFFNHHMFVLEQEEYKKEGI W FIDFGMDL+ IDLIEKPMGI ++LEEEC+ PKATD T+ KL H GK+A++ KP + K F L HYAG V Y++ GWL+KNKDP+NE L+ K++ L+ LF +Y P + G+++KGS+FQTVS H+E L L+ L ST PHFVRCIIPNE K PG +D L++HQLRCNGVLEGIRICRKGFP+R+L+ DFRQRY+IL +AIP G F+D + EKL+ +L +D ++Y+ G TKVFF+AG++G LE+MRDERLS+II++ QA +G L R+EYKK+ ++R L VIQ N+R F+ ++NW W KLY K++PLL A E +M +E+ + KE + E +RK++E ++ + K L +QAE D L E++ Q K +LEA + E E+LE EE L +K + E + +L D+++ + ++E+EK + + ++ L E+++ +E IAKL KEKK L E+ ++ + LQA EDK ++L KAK K+E Q+ D E SL++EK + +E+ KRK+EG+LK T++ + + E N K+ D +K++ + +E + QL+K++ EL ARIEELE+ELE+ER R KVE R DL ++EE++E+LE + GAT+ Q+E+NKKREAE Q++R++++E +A A+ ++K ++AE +++D +++ K K +KE++ EL+DV +E K K + +K R+LE+Q+NE RSK + + S+ D S+ K +N L+ QL+E E + T+ T D K + E K K+ LQ+A + + L EQ EEE A+ +LQ LS+AN++ AQW+ KY+ + R EELE++K+KL+ R+QE EEA+ A +K SS+EK K+R+ E+EDL++D+E++ A A+ L+K+Q+ FD+ + EWK K +E Q++L+ SQ+E+R STEL K++ A+E++ E + K+EN+ L E+S +T+QL GK+ E+EK+R++L E ELQ ALEEAEA+LE EEGK L+ QL+ Q+K + +R+ +EKDEEME ++NH R +++LQ +++AE R++ + + KKK + D+ E+E QL A R + QK +K LQ+ LK+ Q +DD R DD++++ + ERR N L +L+E R +EQ +R+RKLA+ E E ++R L S ++ N K+K + D LQ E+EE E ++ EEKA +A+ + A + EL QD ++ ++ + + + DLQ RL+EAE KG K ++KLE+R+ ELEN+L+ E +++++ +K RKSE+++KEL + ++++K+ R QD DKL K+K + Q EEAE+ A+ SK++K +L
Sbjct: 15 YLRKSEKERLEAQTRPFDLKKDVFVP--DDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPG------KGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQIL-SNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGKSANFQKPRNIKGK-PEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSRIITRIQAQSRGVLARMEYKKLLERRDSLLVIQWNIRAFMGVKNWPWMKLYFKIKPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLE-NDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQARIEELEEELEAERTARAKVEKLRSDLSRELEEISERLEEAGGATSVQIEMNKKREAEFQKMRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSEFKLELDDVTSNMEQIIKAKANLEKMCRTLEDQMNEHRSKAEETQRSVNDLTSQRAKLQTENGELSRQLDEKEALISQLTRGKLTYTQQLEDLKRQLEEEVKAKNALAHALQSARHDCDLLREQYEEETEAKAELQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSELESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKKKMEGDLNEMEIQLSHANRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEEAVQECRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIALKGGKKQLQKLEARVRELENELEAEQKRNAESVKGMRKSERRIKELTYQTEEDRKNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLSKFRKVQHEL 1903 The following BLAST results are available for this feature:
BLAST of TCONS_00060766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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