TCONS_00005993 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005993
Unique NameTCONS_00005993
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005993 ID=TCONS_00005993|Name=TCONS_00005993|organism=Clytia hemisphaerica|type=transcript|length=2249bp
CATTTGTAAAAATATAGGCTTTCAGCAAGGTAAGGCTGCAGAAGAGAGGA
GCAcatttttcacttgttttttatttgcttgAGAAATTTGTGGTCATTTT
TTTGGATTCCAAAATGGCACCCAATAATGAAACATCTACAGCATCATGTG
GCAAGTGCGGACCCGGTTATGCTACACCACTTGAAGCTACCAAAGGACCT
AGAGAAAAATTGTTATATTTCCCATGCATTCCAGCTGATGCTACTAAAAG
GAACTACTTGTGTACCGTAGATGCCGACCCTGAATCCAAGGATTATGCAA
CGGTAATTCATCGAACATACATCGAAGCGGGAAATGGAGACGAGATACAT
CACAGTGGATGGAATGCTTGCAGCAGTTGCCATGGTGATCCAAACAGACA
GCGAAATTTGTTGGTTTTACCGTCAATCACATCAGCCAGTGTCTTTTTCT
TTGACGTAGCAACTGACCCAAGGAAACCAACACTGAAACATGTCATCAAC
AACGATGAGATGTTGGAATCAGCGAAAATACAAAACCTCCATACAGCTCA
CTGTCTTGGTAATGGGAACATAATGATCAGTGGTATGGGAAATGTGGATG
GTGATGGCAAAGGTGGTTTCGCATTGGTTGATGGGAAAACATTGAAAGTT
ACTGGAACATGGGAGAAAGAAGGGCAAGCAGCACCAATGGGTTATGATTT
TTGGTATCAACCACGACATAACGTGATGGTCAGTTCAGAGTGGGGATCAC
CTAAAGCTTTCTTGACTGGATTTAACCCTGCCCATGTTGAACAAGGAATG
TATGGAAATAATTTACACATTTGGAAATGGAATGAAAAAGAATACGTGAA
GAAAATTGATCTTGGTCCAAATGGTTTGATTCCGTTGGAGTTGAGATTCT
TACATCATCCTGATGAAAGCGAAGGTTACGTTGGATGTGCATTGAGTAGC
ACCTTATTCAGAATCTACAAAGATGAAGCTGAGGAGTGGCAAGCTGAACA
AGTTGCTCAAGTTGAACCATTAGATGTGGAGGGTTGGGTACTACCCACAA
TGCCCGGTTTAATCACTGATATCTTAATCTCATTGGACGATCGGTTCTTG
TATTTGAGCAACTGGCTTCATGGAGATGTTCGACAATATGATATCACTGA
TCGACGAAAGCCTAAGCTTGTCGGACAAGTTTGGATCGGTGGTTCCATCT
CTAAAGGAAGTGGTGTCAAGGTCTTGAAAGAAGGATATGAACAACCAGAA
CCGACCattttgaatggaaagaaaGTTGAAGGAGCAACACAAATGATTCA
ATTAAGTTTAGACGGAAAACGTTTATACGTTACGACATCATTGTTCTCAG
CATGGGACAAACAATTCTACCCTGATCTTGCTAAACATGGGTCATTCCTT
CTCCAAGTTGATGTTGACAATGAAAAAGGAGGAATGAAAATCAATGAGAA
ATTTGCCATCGATTTTGCTACTGAGCCTGAAGGACCGGCCTTTGCTCATG
AAGTTCGATATCCTGGTGGTGACTGCTCTTCTGATATCTGggtttaaaat
tgaaatttgaaacgAGGTTTAATAAATTTATTATTCTGAAAGCAGGTCAG
AATCCAGAATCCATGATCAGATTTTAAAGAATCTGTCCTTTttggaattc
ttttttttattaaaaaaatgttcgAGTAAAAAAATCGATTATTGACCCTT
ATAGATAGGAAAAATTGAcctttttgggacccttagagagacttttccca
aaatgagagagaaaaaattgacgtttttgggaccctaagagagacttttc
tcaaaatttttgtcgattttcactcgattgttgtccaaattttttatttt
catgaattttggaCGCTTACTACAGAGAtccaatttgctttttaatggtt
tttgtacccctttgagagactttggagggtgtgaaaaaggggcccttatg
gctcgcacataccagGCACCCATTTTGCTCAAGTCCCCCCTCCCCCCCGG
ATCAATCTGGACCTCAAGCTAAAATTGACGAAATCTTGGCTATAACGAAT
TCCCAATCTGACGTAATTTTATATACTTAAAGTAGTGACTGTAATTTTTC
AGCTAATGTTTTGTTGTCTTTCGAtcgtaaataatttttttagatttttc
atttcttctgtGAATTTATATATCatccaatctttttttaaataagcata
tattataaacgagtgaatacaaaaagaaattttattggtaaaataaaaa
Run BLAST on NCBI

transcript from alignment at sc0000062:67030..80408+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005993 ID=TCONS_00005993|Name=TCONS_00005993|organism=Clytia hemisphaerica|type=transcript|length=13379bp|location=Sequence derived from alignment at sc0000062:67030..80408+ (Clytia hemisphaerica)
CATTTGTAAAAATATAGGCTTTCAGCAAGGTAAGGCTGCAGAAGAGAGGA
GCAcatttttcacttgttttttatttgcttgAGAAATTTGTGGTCATTTT
TTTGGATTCCAAAATGGCACCCAATAATGAAACATCTACAGGTATGTAAG
AGAAGTCTTTGTATATTAACTTATTGaattatttatttatcaaaACACTA
CCTTCtaacagacccactgggaacccttcccactggtaAAATCGAGGGTA
AAATAtcgtcccggtggaaaattatcctccaatttttgccgccactgaaa
ataatcaaataaaccaatcctcactgcaaaatatcattctatttttccca
tccccactgaattttctgacttgaaaacgaaaaaattgaaatccccagcc
atagaaAATACGGGAATATCAAACCCATCGAGTTTCTGTGCgttatttct
atccccacttGCTGGAAAAATTCTaccgggtttgtgagaaggtGGTGTAT
CAAAGCATTTTTGAAAAGGTTCGCTGACTATTTTTCCAGATATGTTGAAC
tttatttctacaaaaaaacgtgtatttatgCTTATTAGGTCAATCagggc
tatcgtttgccatggttagattatctaaaCAGTTTTCTTTTTCTCTACGA
GATAGCGaaaaaaatgcttataaaaaaaaatgtgtgcCAGCTTGTAGTTT
TTGATTGAGACGGCTTCCGATCACAATTATTTGATTACTGTGGTGCTGAT
TACAGCAAAAGGGTAGATAGGGTGGTTGAAGGAAGGCATTTTATAAATTA
CATCACTAACAAGTCTCGTTTGTGGATCGGGGTGGGGGACACTCATATAG
TCCGAACCATGGCATGTGCCGCCCTCAAGGGTAGGTTTTTGGAGATCCTC
GaaatgtactgtaagggtcttcttttagctggattCAGTGTAAGGGTGTG
TTGGGACTGCTGAATCGCAAGTCTAAACAGTAAAAATCTTATgcatcttt
atagttttgatttgttttttacaTTGTGTCGACAcctcaggctcattttc
aggtggcttTATCAAATTAAGATgtgaaatcaaactacactgtaaggatC
AGAAAAGTtaggtaaaatgcactgtaagggtatcttttcactgctcaagg
gctgcactgaaagggtccgattttgaaagctttttttttaatcatgaaAA
ATGATATCGTATATTATAGACATTCCAGTcgcaatgcattgtgggatagA
ATATCAATTCCTATAAATCTTTTAATCTATAAAACACACTTTTCATGGAG
CGCCATTTTAgctgatttttaattttggtgttttcgGCAAGCGACAAAAA
GTTGACTTAAAAGACAGGACCATTTTCCTCAAATGTTAGTTTTTagcgat
ctttagagcttcagcgtgtcgcGTTAAGAAAACTacacatctgttatcag
gttagctcACGCTCGGTACGCAAAAAAAGAGTCTGGGTAGAAACACGGAA
CTTGAAAGACATATGCTGCCAACCAATACGGATGTTTTTAGCACCaacaa
aaaaaaagctttttaagctcGCAAGGAATCGAATTACGCTGTCCCATTTC
AAATATTGCCACATCTCTCTTAATAGCTTGGCATTCATCCAACGttattt
ttaaagtaaaaacagATGAGCTTTGCATGTTTCGAATTTGCATCCAGTTT
TTTTTAAGGATAAGATTGCTTCTGGAATCAACTATGAACGATACATTTCC
CGGGGGATAAAACTTGCGATATAAATAGGGTGGTTTTTGACAGTCAATTT
TATTaagttcaaaataattttcGTCCTATGTGGAAAAAGTATACCGAAAA
AGTAAATTAGGGGATACATTCAGATTAGTGAAACAGGACATTTAAAGATT
GTCCCGCTTTCTTTATAATAACATTTGAAACCACTCTAGGTCAGATGACT
CTCTGATGAACATGATACAGTTACTTATTTTTTTGATAAGAGCAAAATTA
AAAGAACAACCAACAAGgctcaaaaacgtcaaaaaaatcagaaacttTAA
GAATAAAGCTGAGCCTGGTATAGCAGACTTTTTGGTAATTTAAGGGACCC
AAATTGGTAAAcacatccctgtgtcacagacccactagaaccccagcccc
actggaaaatctggTAAAAATCTATTCCCCGGTTGAAAactaccctggaa
tttcagccccactaggaAACCGATATTGATTTCAttcccactcgaaattc
aatgtttaaaaattgcactccaaaactacCCCACTGGacttttttaacct
tggaacaatagaatttccatccccattggaatttcaataggaatttttat
cccaattAAGGAAAGAATTTGCACCGGggatgtgagacaggggtgtctaa
aATATGTCATATAAAGTATAAGACCTAGTTGACGCTTAAATTTCGGAAAA
ATAGCAACAGCTCAGCCTCAACAAAAAATTATGGGTTCTTGTAAAAGAGC
GCAATCTCTCTCTTTTGCACACGAGCCTCGTAGATACTCATGCCTTGTAT
AGTGATTTAAATACAGATCTTTCCATTTTCCAACAAAAATCTTATTTGAT
GCAAGTATATAACAAGATTACTGGGATAAAATCTGACTTTAAATTCCTTT
ACAGCGATAAGCAAATCACCAAATTGAATTTAACCACATTTCCAAAGCTA
GCTGCTGATATTATCTTTTGATCACAGAGAAACACAATTCTAGTTAGTAA
AGGTTTTAGCAGCCCATTTTAGTGAAGCATTTGAATTTCTGTGATCCTCC
GTGAATATAACAACAACAGTGTAGTCACTTTAAATCGAACCagtgtctcc
ttaactcgaataagtTTTATGGTCTCTGCctcataaaccttactccatac
cCCGAAATTTCCTTGACTCGAACAAGTTTGTGTTCCCCTGTGAAATTTCG
AGCTATGAAGTCTCGACTGTATCAATTACCCTATAACACTGAGGGAGAAA
CTTATGAACTCTTAGAAAGGATATCAATTCCTCGTAAATTTAGGAAGAAA
ATCTCTCGGGTATAACTACCGACTCTTCCTTTTCTCATCTCAATTTCTTA
TATTTATAGCATCATGTGGCAAGTGCGGACCCGGTTATGCTACACCACTT
GAAGCTACCAAAGGACCTAGAGAAAAATTGTTATATTTCCCATGCATTCC
AGCTGATGCTACTAAAAGGAACTACTTGTGTACCGTAGATGCCGACCCTG
AATCCAAGGATTATGCAACGGTATGTTCCTTAATCAACCTTATGTACTAA
GGGGAAGTTTGTCCGCTGGGGAAACTAatgttaatagctcctgaaataat
agagcttttgacatggaattttctaaaaatgcttaacatttatttagctt
caaaaaaaataattttggacacctaaaatttttcacaccttgagcataaT
GACATTTCtgtcaattttcaattcaagtttattttttattcaaaatgtat
atttaaaaataaacctttaaattttagcaaaatttccCAAATTCGCCAAA
GTTAGTTCCCTTAGGGTACGCTAGATATAGGCCGTGAAAGGATTTGGGTT
TACTTAACCAAGGTTAATAAGGTAGGCAAATCGCAATAACCAGGTCATTT
GACGTTATAGAGAGATCGGTCATGAATTGCAAGGGCGCCATCTTAAACAA
AAATATATTACGAACATACAAGCTTATACCAAAAAGCTTCTTTACAGAAG
ACTAGTTTCTTACCATACAATCTTGCAGTATTCGGATTAGCTTTAGACGT
AGGTAGCTTGTCGGCTCTACGGTCTCCATAAAATGGGACTTTCTGCACTT
ATTTGAATGGGCttatccagaaaaaaaccgtataccccctgttgaagagg
tccatttccgttccaagggggtaagatttgatatgtggcgggattccata
gggagatacaaaaatctgtcaaaaataactggaattccattggggtagcc
ttttaaatcctactaaaattcatgattccagaggggtttaagcctgaaat
tgccttgaattccagggggttgcagcatttccagccacaaaatgatggac
ctcctcaacagggggtatacggtttttttctggaaaagcccaatattcCA
TCTTTATGTTATCGATACATTTGAAGCTTCTCATTCCAGGGGAAATCATT
CTTATCACAACTTTACAACGGGAAAAAGATCAAAACTCTACNAAAGCTTC
TCATTCCAGGGGAAATCTTTCTTATCACAACTTTACAACGGGAAAAAGAT
CAAAACTCTACGTAGGTGAAAAACAGCTTGCAATAGTTACTTTGTTCATA
GGAGTTGCACATCTTTTTATACAGCAGGACAACTAAAAACACAGTGTTGC
TGGTGAAAACAACAAAACGATCCTGGAAATAGACCAGGAGATATTCTTGG
GGATGAATAAAGAGATCTTAGtctttttatcactttttctataattttct
TTAAAGGTAATTCATCGAACATACATCGAAGCGGGAAATGGAGACGAGAT
ACATCACAGTGGATGGAATGCTTGCAGCAGGTATCTTATAATGTTTGAGG
GAAGCCAAAACTCATGTGAGAAAGATTGCGACCTGAAGGCACCTCTTTCG
ATAACTATCTACCTAAAATCAAAGACATATATGTTTGAGAAaatcgaggg
gtaaatcactcgaaaaattatcgtaaacctctacaaaaagtcaaaaaaaa
gtcaaaaaagtcaaagaaaaagtcaaagtcaaaaataaagtcaaaaattc
ttagaaaaaagtcaaaaagtcagataaaagtaaaaaaaagtcttgaaaaa
gtcaaaaagtttcttgaatgggcggatgggtgtagcaaaatttatgggtg
gttggcgtttttggacagatttgggCGGAAAATGTTGGGCGCCCGAAGGT
GGTGGGCGTTTTTgtcgggaaaaagtcaaaatgaaagtttgaaaaaagtc
aaaaaaaagtcaaaaagtcaaatgaaaattaNggaaaaagtcaaaatgaa
agtttgaaaaaattcaaaaaaaagtcaaaaagtcaatgaaaattaaaaaa
gtcaaaaagtatcctacaccttttttcaagtgatctACCCCTCGGAGAAA
ATCACTTGAAATTACTGATAAAACATTGGATAAAGGTCCTCCTCTCCCCA
CCAAGAGCAATGTTCATTTTCTACGGCTGTCTCATCGTTCATTGAATATT
GTCATTGGGGGAAGGGGGAGATTTCTTAGAAGGGGGGCTACTAATTTGCC
TCTGTCCTGTCTGTCTCAACATTTTTGTCCTTAATTGTAGTGATAGGGGA
GAGTGCAACTGTTGCTCCCTGGGTTACTCCAGTCTTCTCTCCAATTTAAT
TTAAGAGAAGAAGCAACGGTGAGTGAGGTAATCCAGAGAGAAACTGAGAG
GTCGCTGAGTATTTATGTATAGAGGCATCAAAGTATCATTtttagcgacc
gtagtgcagtgatACAGGATCCAGCTATGGTTCACAAGGTTGTGGATTCA
ACCCCCAGCTGGTTCaaaccaaagattctcaaaatggtacttgatgcctc
tctgcttgatatgctcagtaattaagaaacggatcaagggtaagtggaaa
aATCCGATGAGAAAGAATGgtaccctcccctaccttcaggtaTCGAACGA
GGAGCCTTCGTGTCGCCTCCGAATGCGGTCGCAGACGtatttacttactt
actagtACTTATCATTTTGGAGTCTTTGGGAGTTATTTTGGGATGACCAT
GTGTTAGAGGAATTAAAGCAGGCAGGCCTGAATGAATGATAGAaaagtgc
ccagtggtaaaacttcaaattaatttgcTGGAGGACATATTCAAGTACAG
CAGGGCTAAATTTGGAGgctcttggatcactcgttgaccaaaaatggtca
aaaaacggtcaaaatcttaaaaaagtgaatttttgacaaaatctttgcat
tttttgactttttggcttaaccctattcaacctaggcttttaggggcggt
tcagaactaNAATATTATAATAatagataaagaaaatttgCCGACTCTTA
AACATCCAATTTATCAGTTAATTGCAAAACAATACTCACAAATGGattag
aacatttttgaaaattataggATTAAAACTCTAGAATTAATTCTGAAGGC
TCCAAAGAtttagaatgttcttataaaaaacgtgtatcatagTGCTGTTA
CTAATCTTTCTAGATAATCTGTTTGAGCATAAATTATAGAATCGATGCAA
GATCGATCGCATcgtttaataaaataaataattaccTAATTGTCGGTGTT
GTTTATCTTATCAGTTGCCATGGTGATCCAAACAGACAGCGAAATTTGTT
GGTTTTACCGTCAATCACATCAGCCAGTGTCTTTTTCTTTGACGTAGCAA
CTGACCCAAGGAAACCAACACTGAAACATGTAAGTGAAAATTAGGGATGA
AAGTCTATTAAGGAAGCTTTTAACTACCTACATTctgaaaatgaagttta
tagcacaaaaggatagaaagtccattttgttcttcttcatttttcatctt
cattcttAGCCCCGGCCCCCTAATAATTTTCCAACTcattttacacgctt
tttttataagaacaaactatataagcaCATAAGggttcgatggcaaaaat
gttaagaacaagttaagaacattttaaggcttgccGGACTCGAAaaagcc
aatttcttaggaaaatgggcaaaatggTCATAAAGAATGggaaagtaaga
acatgttaagaaagtttttaggcttgaaactcaaagttaagaacatccga
aggcttcaaaaatcttagATGCTCTTACGAAGAAAACGTGTATTGACTGG
ATTTTTACACCTTTGTGCTACTCTACCAGGTCATCAACAACGATGAGATG
TTGGAATCAGCGAAAATACAAAACCTCCATACAGCTCACTGTCTTGGTAA
TGGGAACATAATGATCAGTGGTATGGGAAATGTGGATGGTGATGGCAAAG
GTGGTTTCGCATTGGTTGATGGGAAAACATTGAAAGTTACTGGTTAGTAT
CTGCATATGAAAGCAATATCAAGGTTTTCTGAATAGAAGGGCTACTTGCA
GATCGTTTAAAACAGGTATCTTTGAAGGTTATTACACAAAATTTAGCTTG
ATtagtaaatttgaaaaaaatgtgatcGGGCCAAGGCAGTGGGAGGGGGC
TGCCGCGGCACCTGTACTCTATCGAAAGATACGTCTaacttttatctttt
taaaggAACCTTGGAAAtttaaaagtcattttttctcttaCAGGAACATG
GGAGAAAGAAGGGCAAGCAGCACCAATGGGTTATGATTTTTGGTATCAAC
CACGACATAACGTGATGGTCAGTTCAGAGTGGGGATCACCTAAAGCTTTC
TTGACTGGATTTAACCCTGCCCATGTTGAACAAGGTTTGTTAACAAACCT
AAAAAATCTTATAGCAAATTATTTAATATTGGGGATCGCTACACAGCTGA
TCAGATTGTGTTGCTGAACTACTAAAGCGTCCTAGCGTTGGAATAACACT
TTACTGATTCAAATTTTCATATGCAACTTTATCTTCATTttggaatcttt
gaaaatttttgaaaggttATAAAATCATCCGTTTAacattatcttttcaa
cagtgcaatttttttgaaacagacTTATAGTAGAAAACattgattatttt
tatttccGTTTTTTCTCAAAGGAATGTATGGAAATAATTTACACATTTGG
AAATGGAATGAAAAAGAATACGTGAAGAAAATTGATCTTGGTCCAAATGG
TTTGATTCCGTTGGAGTTGAGATTCTTACATCATCCTGATGAAAGCGAAG
GTTACGTTGGATGTGCATTGAGTAGCACCTTATTCAGAATCTACAAAGAT
GAAGTGAGCAACTATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGCACCTGTACTCTATCGAAAGATACGTCTaacttttatctttttaaa
ggAACCTTGGAAAtttaaaagtcattttttctcttaCAGGAACATGGGAG
AAAGAAGGGCAAGCAGCACCAATGGGTTATGATTTTTGGTATCAACCACG
ACATAACGTGATGGTCAGTTCAGAGTGGGGATCACCTAAAGCTTTCTTGA
CTGGATTTAACCCTGCCCATGTTGAACAAGGTTTGTTAACAAACCTAAAA
AATCTTATAGCAAATTATTTAATATTGGGGATCGCTACACAGCTGATCAG
ATTGTGTTGCTGAACTACTAAAGCGTCCTAGCGTTGGAATAACACTTTAC
TGATTCAAATTTTCATATGCAACTTTATCTTCATTttggaatctttgaaa
atttttgaaaggttATAAAATCATCCGTTTAacattatcttttcaacagt
gcaatttttttgaaacagacTTATAGTAGAAAACattgattatttttatt
tccGTTTTTTCTCAAAGGAATGTATGGAAATAATTTACACATTTGGAAAT
GGAATGAAAAAGAATACGTGAAGAAAATTGATCTTGGTCCAAATGGTTTG
ATTCCGTTGGAGTTGAGATTCTTACATCATCCTGATGAAAGCGAAGGTTA
CGTTGGATGTGCATTGAGTAGCACCTTATTCAGAATCTACAAAGATGAAG
TGAGCAACtatttctttgtttcttttctctCATAAGCTCTTATTTATCTT
ACAAGTCTGAttcacagatttctgtaaagcccgaagagctagatggGGTG
CTTTCAGCTTTTCTAAGAAAACAAAAGTAAGTATCGCAAGAAAAATTGTT
ACTTTTgctttcgaaaacccgcgaagctctTGATTGGTCAAgtactgaaa
ttctattgtaatgtcacgtgacctagataGGATTTGCTACCTACCTACTA
CTTTTCAGAGAAAGCACTCTATCTAGCCCTTGGGACTTAATAGAAATCTG
TTGTTCTGATCCAACCCTGAAATCTGTAAAAAATAAACACAGAAGTTTAT
CCgaattttaatatatttttcaagtttctgAAACATCTGTATACCCTTTT
ACTGTCTgttaattttctatttcaaaagGAGGCAAAAGGAGGGTTTGAGT
ATGTACCGGCCATAAAGGTCTTTTTGGATCTTCAaaatcccactaagggt
cgtaaaaatcacaTAATTTAATTCCAGTCTCCCCTCTAGGGGTTGTAAAA
ACAGCTCAAATTCGATAATTGTGACCCTCAAAAGCCTAATTTTCTATTCA
TAGTCACAATAAGGGtcacaaaatcaaacaaaaattcggtttttttctcc
atatttaagtccctctaaggaTCCGTTTTGGCCCCAGGAGCCCAACCGAC
AAAGTCGGGCGGTACAAACCCGTCATCCCGCAAACCTAGAAACCCCTCCC
ACGGGTTGAGGTTTACCTAAATTCTTTTTTAGTGAAACTCCATTTTGAAT
TGATTGCCTGTGAAACTTTCGTTGGTCTCGAAAGTTTTTAGGAATCGTTA
GAGAATTGTTAATTGCTTTTCAAATGAGTAGATTTATAACCACTTCCTCC
GCTTTTCCGCTAAAGTAATGAATGTCATATccgaaaaaaaacgtgtaatt
acaGTAAACTAATAGACTCGTTATATTAATTTAGGACCACAAATTAAATT
TCCCTATTAAAAAGAGATGATACATACCTAAGTAATTAGACACATCACAA
TGTTCATTTTACTATCCATTCgcttgtatcagagttatggtacccGATTC
CCCTCACATGATATAGCTCGACCCAGGTAAAGGCACGtccacttgccaag
tgaaccatAGTATGGGAGGTCCAACTAGGGCCTACTTACGGAAGGCAATT
TTGACTACGACAATACCACTGCACCCATCAAAACTATTATGGCATGATAA
ACATACTCTGTTAGCTAACTATGCCAACTACTAGTCGAAAAAACTCCTTG
AAGAATGTGGGCAAGGAAAGGAAGATTGACGATTTTCTCTAGAACTATAT
ACAAAAGTTGAGTGTTGTTTGATAGCTAGTTATTTTCCTAAATGGGGAGT
AGCGAAATCTTGGCAATGGAAACTTCAAGGTTAATATACGATAAGGACCC
TTGGAACCACtaagtttcaagcccgaagggctagaggtgagactcctgga
tgggaaatgaaaccacttatttcccatccagaacgccctcgcgtagtttt
tacacaaacaccaGATTggaactaaaatctatcgcaagatttcaaaaaat
gtagtcctccaaaacaaaagaaacgcTAGATACAATCCCTCGTCATGATT
ACGGTGCGTTCTATGCACGTTTTGGattggaaataagtggcttcaatttc
tcttacctgagaagggttaaagtttcgcctctagcccttcgggcttgaaa
ctcaatgctttGAACATAAATGTATTCTATTTATTCCTTTCACACAGGCT
GAGGAGTGGCAAGCTGAACAAGTTGCTCAAGTTGAACCATTAGATGTGGA
GGGTTGGGTACTACCCACAATGCCCGGTTTAATCACTGATATCTTAATCT
CATTGGACGATCGGTTCTTGTATTTGAGCAACTGGCTTCATGGAGATGTT
CGACAATATGATATCACTGATCGACGAAAGCCTAAGCTTGTCGGACAAGT
AAGTTAATAGTTAGACAACCCTGTCTCTAACTCTATATACATTTCAAAAC
taaagttaaaggttttgtttttgaataagagtgatatcgtttacttactc
gtcaatttaatGCACAACCTTTTTCAcgttggattgacacggatgtggag
caagattggtcagaaagaggaaacaAAAAacactgtcccgatatgaaata
tgtgtctggtatgaaacgggaacacttatctcaaaataaaaccttaaagt
ctccataactcgaacacacaaggtgaacaaaaacttatttgagttaagga
aatctTGATCATATAGCATAAAGCTTACAATGCATGAAGGGACGGGAAAA
CTTGTTCAAATTAaaggagactctactgtatataAGCTCTGGGATCCCGT
TTTCGTGAACAAATGACGCACATTTTTATAAATGCTGTTTCAGAAAATAG
ATGAATGATTCGATCCGTAGCTGTAAGAGTATTGACTTTTCGAATCATAG
ATAGTTTTCTGAAGGTTGCTAACTAgaggaaaaaaaagataaaatattta
gcGCAGATTAAGATGCTGGAAGCAATTTTAGTGGTAAATAAAGTAGATTT
TGGATAGTTCGGTCTTTATTCGGTCTCGATGACGTCACAGAAACTAGATA
agcaatattttgaattatcaaatcATTATCAATTTGTGTATAGGTTTGGA
TCGGTGGTTCCATCTCTAAAGGAAGTGGTGTCAAGGTCTTGAAAGAAGGA
TATGAACAACCAGAACCGACCattttgaatggaaagaaaGTTGAAGGAGC
AACACAAATGATTCAATTAAGTTTAGACGGAAAACGTTTATACGTTACGA
CATCATTGTTCTCAGCATGGGACAAACAATTCTACCCTGATCTTGCTAAG
TAAGTATTATGACCCCCTCCGCTCCcgcttctcacagacccacggGAAAC
CCTTCACCCACTAGAAAAAGTTCGTCAAAAATATCTTTCCCGGTGGACAT
TTGTCCTCCATTCTGTCcacattcaaaataatcaaataaactaatcctca
ctgcaaaatatttattcaatcccaactgaattttctgacttgaaaacaaa
ataattaaatcccccagccatgaaaaatatggaaatatcaatccctatCG
AGATTCAGTTCGTTAATTTTAATCCCACTGGCTAGAacaatcctaccggg
tctgtgagaaggggatgttttacaaaaactgagatagtttttcttttcaa
aataacGTGTTTCTGGGCCCACGAAACCAGGGGGTCATGGCTCCTTCATT
CTATTTAAATagaaagtcattttcagtccTAAAATAAGATGTGGCTTGTG
GCTAACACTTCTTATATCGATTCCTTTCAATCGAAACCGTGAAAATTCAT
TCCGGTCTGATGCCTCTCGAAATATCAAAATGATGCGAAATTAggataaa
atcattttttattttatttgaataaCAGATAGCAGTTCTTTGAGATACCG
ctttaatatcaaaagaaagattgaaAGAGGAAGATAATTTTACCCCCGTT
TAGAAAAGGTTATTGACTGACCTTGACTTCCGACAGGGACGTGCCACTGA
GGATCGTAAAATAGACTCTGTCAACAAAACATTGACCCCGATGGATAAAA
TTCAGAACCTATCATCTACCTAATTTAATTTTCTCAGCTACATTCCCGTT
CCCCATTTCGACCTATCTAACCATAACCTCTTTGGTTATACTGCCAGATG
TACTTCTCCGTAGTAAATTTAATGCTCTAGATCTGAAATATTAATATATA
TCTTCTCAATATAGACATGGGTCATTCCTTCTCCAAGTTGATGTTGACAA
TGAAAAAGGAGGAATGAAAATCAATGAGAAATTTGCCATCGATTTTGCTA
CTGAGCCTGAAGGACCGGCCTTTGCTCATGAAGTTCGATATCCTGGTGGT
GACTGCTCTTCTGATATCTGggtttaaaattgaaatttgaaacgAGGTTT
AATAAATTTATTATTCTGAAAGCAGGTCAGAATCCAGAATCCATGATCAG
ATTTTAAAGAATCTGTCCTTTttggaattcttttttttattaaaaaaatg
ttcgAGTAAAAAAATCGATTATTGACCCTTATAGATAGGAAAAATTGAcc
tttttgggacccttagagagacttttcccaaaatgagagagaaaaaattg
acgtttttgggaccctaagagagacttttctcaaaatttttgtcgatttt
cactcgattgttgtccaaattttttattttcatgaattttggaCGCTTAC
TACAGAGAtccaatttgctttttaatggtttttgtacccctttgagagac
tttggagggtgtgaaaaaggggcccttatggctcgcacataccagGCACC
CATTTTGCTCAAGTCCCCCCTCCCCCCCGGATCAATCTGGACCTCAAGCT
AAAATTGACGAAATCTTGGCTATAACGAATTCCCAATCTGACGTAATTTT
ATATACTTAAAGTAGTGACTGTAATTTTTCAGCTAATGTTTTGTTGTCTT
TCGAtcgtaaataatttttttagatttttcatttcttctgtGAATTTATA
TATCatccaatctttttttaaataagcatatattataaacgagtgaatac
aaaaagaaattttattggtaaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003424XLOC_003424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005993-exon-sc0000062-1491911889:67030..67170TCONS_00005993-exon-sc0000062-1491911889:67030..67170Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:67030..67170TCONS_00005993-exon-sc0000062-1510915933:67030..67170Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:67030..67170TCONS_00005993-exon-sc0000062-1575043694:67030..67170Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:70139..70299TCONS_00005993-exon-sc0000062-1491911889:70139..70299Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:70139..70299TCONS_00005993-exon-sc0000062-1510915933:70139..70299Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:70139..70299TCONS_00005993-exon-sc0000062-1575043694:70139..70299Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:71536..71609TCONS_00005993-exon-sc0000062-1491911889:71536..71609Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:71536..71609TCONS_00005993-exon-sc0000062-1510915933:71536..71609Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:71536..71609TCONS_00005993-exon-sc0000062-1575043694:71536..71609Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:73394..73508TCONS_00005993-exon-sc0000062-1491911889:73394..73508Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:73394..73508TCONS_00005993-exon-sc0000062-1510915933:73394..73508Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:73394..73508TCONS_00005993-exon-sc0000062-1575043694:73394..73508Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:73959..74121TCONS_00005993-exon-sc0000062-1491911889:73959..74121Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:73959..74121TCONS_00005993-exon-sc0000062-1510915933:73959..74121Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:73959..74121TCONS_00005993-exon-sc0000062-1575043694:73959..74121Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:74373..74513TCONS_00005993-exon-sc0000062-1491911889:74373..74513Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:74373..74513TCONS_00005993-exon-sc0000062-1510915933:74373..74513Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:74373..74513TCONS_00005993-exon-sc0000062-1575043694:74373..74513Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:74801..74929TCONS_00005993-exon-sc0000062-1491911889:74801..74929Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:74801..74929TCONS_00005993-exon-sc0000062-1510915933:74801..74929Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:74801..74929TCONS_00005993-exon-sc0000062-1575043694:74801..74929Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:75676..75728TCONS_00005993-exon-sc0000062-1491911889:75676..75728Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:75676..75728TCONS_00005993-exon-sc0000062-1510915933:75676..75728Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:75676..75728TCONS_00005993-exon-sc0000062-1575043694:75676..75728Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:77527..77727TCONS_00005993-exon-sc0000062-1491911889:77527..77727Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:77527..77727TCONS_00005993-exon-sc0000062-1510915933:77527..77727Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:77527..77727TCONS_00005993-exon-sc0000062-1575043694:77527..77727Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:78423..78628TCONS_00005993-exon-sc0000062-1491911889:78423..78628Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:78423..78628TCONS_00005993-exon-sc0000062-1510915933:78423..78628Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:78423..78628TCONS_00005993-exon-sc0000062-1575043694:78423..78628Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1491911889:79544..80408TCONS_00005993-exon-sc0000062-1491911889:79544..80408Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1510915933:79544..80408TCONS_00005993-exon-sc0000062-1510915933:79544..80408Clytia hemisphaericaexon
TCONS_00005993-exon-sc0000062-1575043694:79544..80408TCONS_00005993-exon-sc0000062-1575043694:79544..80408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:67030..80408 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.4774	123.739	141.614	157.415	6.41148	6.47779	45.5025	52.0773	57.1514	55.3861	57.5439	56.549	138.034	154.038	58.794	56.7209	11.3256	16.5379	99.9099	45.3342	31.404	34.4678	56.3592	65.0004	32.8369	17.3053	217.74	322.355	87.8614	69.3617
Blast
[Close]
BLAST of TCONS_00005993 vs. Swiss-Prot (Human)
Match: SBP1 (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0
Identity = 279/473 (58.99%), Postives = 354/473 (74.84%), Query Frame = 3 
Query:  138 TASCGKCGPGYATPLEATKGPREKLLYFPCIPADATKR--NYLCTVDADPESKDYATVIHRTYIEAGNGDEIHHSGWNACSSCHGDPNRQRNLLVLPSITSASVFFFDVATDPRKPTLKHVINNDEMLESAKIQNLHTAHCLXXXXXXXXXXXXXXXXXXXXFALVDGKTLKVTGTWEKEGQAAPMGYDFWYQPRHNVMVSSEWGSPKAFLTGFNPAHVEQGMYGNNLHIWKWNEKEYVKKIDLGPNGLIPLELRFLHHPDESEGYVGCALSSTLFRIYKDXXXXXXXXXXXXXXPLDVEGWVLPTMPGLITDILISLDDRFLYLSNWLHGDVRQYDITDRRKPKLVGQVWXXXXXXXXXXXXXLK--EGYEQPEPTILNGKKVEGATQMIQLSLDGKRLYVTTSLFSAWDKQFYPDLAKHGSFLLQVDVDNEKGGMKINEKFAIDFATEPEGPAFAHEVRYPGGDCSSDIWV 1544
               CG CGPGY+TPLEA KGPRE+++Y PCI  +      +YL TVD DP+S  Y  VIHR  +     DE+HHSGWN CSSC GD  + R  LVLPS+ S+ ++  DV ++PR P L  VI   ++    ++  LHT+HCL +G +MIS +G+V G+GKGGF L+DG+T +V GTWE+ G AAP+GYDFWYQPRHNVM+S+EW +P     GFNPA VE G+YG++L++W W   E V+ + L  +GLIPLE+RFLH+PD ++G+VGCALSST+ R YK+E   W  E+V QV P  V+GW+LP MPGLITDIL+SLDDRFLY SNWLHGD+RQYDI+D ++P+L GQ+++GGSI KG  V+VL+  E   QPEP ++ GK+V G  QMIQLSLDGKRLY+TTSL+SAWDKQFYPDL + GS +LQVDVD  KGG+K+N  F +DF  EP GPA AHE+RYPGGDCSSDIW+
Sbjct:    2 ATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLK-DELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSL-KDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
The following BLAST results are available for this feature:
BLAST of TCONS_00005993 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SBP10.000e+058.99Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
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