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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060524 ID=TCONS_00060524|Name=TCONS_00060524|organism=Clytia hemisphaerica|type=transcript|length=3233bp
TTGAACAACCACTCCATAAAATAAAGTTGGTAACATATTCCGCCAACCtg
ttctaacttgggacaattgatcgaaacatgggactgtggGACATGGGACA
TACGACCCTGTCTATGACCCATGTCTATGTGGTCTTGTGTGGCATACAGT
TTCTACTACTTTGTCGGTCGCTTTGTCATAATTTGGAAAATTCTGTGATA
TGATCCGGATGGTGTTGGGATAactgaagaaaatgaaaatataataaaac
TGTAAGTCATATGAGCAGTAGTAGTAAAAAGACGTGATCTGGACGTGACT
ATGTTTGTTCATTGGCCGAAAGGGGGTGAAGTTTTGGACCTTGGTAAgat
gtttgaaaagaaaactttaacgactaaaaaactaattaacatgctttcaa
cgaagatatccaggtctttcattttagggctatgcatgttagcctccact
gatgcaagttacccaatctcacggtagagCAAAACTGAATTCTTATTTCT
GTACCGCGATTTTGCATCTTTACTGTTTTGAAAGGCACTTTTATCTTTTA
AGCAATGAAAGGGTTTCATAATTTTAGCTAAAATCAAGTTTCACTTAATT
CCCCTCAGCTTTTAGATGAAAATGCCTGTTTTGgcagagagaaaaaaaat
gacCAAAGAGGAGCTTGAAGCAATAGCTCCATTTATTTTGGAAATGCGTC
GAAGAGAGCAAACACAGGAAGCTGAGCTGTTACAACACATACAAAACATT
GATCAGAAAGATGATTTCAAAGTAGAGGAGGCGGAAGAGGAGGACCATTT
TCAGAGACAAGAGatgataaaattttttgaagatcaCTTGAACACTGTAC
GTCAACACATTGATGAGCAAGAAACAAATTTAACAAATCTGCAACAAGAA
AAACTTGATCTTTtcgagaatttcaaaaaatctttacaaatcaaacacaa
acaacaacttgaacaacaaaaacaacagcaACCAAAATGAAATGTTCTCT
TcattattgatttttctttagttttgtaAATAATCATTCAGTATTTATTT
CacccattttttatttcttttatatcCTCAGTATAACATAGTAAAACAAT
TGATAATTATTGAGAAAATTGAGTttactttttaataattttattcaTCT
GTCGCCTTGAGTTATGAAATAGAAATGCAACCTGGGTAATATTACATAAT
TGGTGTCTGCAGAGAAATGGACAAAACCTTTTAAAcctaatatgaaaaaa
aatgtcttttcgaGTTCTAATGAagcttttttccaaaattctcaaatatt
tgtttaaatttttctagtgaagtaaaaagaaaatcaaatacaATGCCTTT
CACAGAAGAGCAATTAAAAGGGTTTCTGGAAAACCTTTTGAAAggtcaag
gaaagattgaaaatgttgaatttaTCCATTCAACCTCTTTGATAGCCAGC
AGTTCAAAAGGTGTAATAATTCAATATGCTAACGGCACAACCAAAAAGCT
TCATTTAAAGCTTTGTGAAGATGGTACAACTCCTGGATTCTTAAATgaca
aattgaaaatatttgaacgaGAAGAATTCTTTTACAGCAGTCTCTTACCA
GAAATGATCAAATTTCAGATAGAAAATAAAACAGATGAGAAATTAAACCA
TGAAAACAGTATCAAGTCATTGTTCTTCCCATACCATGGTAGCCATCATG
TTGAAGGGGCCggtattgttgttgttttggatCGTTTCTCACCAGAAGAA
TATTTTGTGACCAAACCTGAGGAGTTTCACACTTTACAGCAAATACATCA
TTGTATGAAGAAGATAGCAGCTTTTCATGCTGTATCATACTCAATGAAAA
TCAAGAAAGTTGTCGATTGGAATAATTACAGCCCATACCTCCCTGATGTT
CTTTTCCATCCTTTAACTGAAgatgtctcaaaaacctattTCAGTAGCAT
CTTTGCAAGTAATTTGAAAATCTTACGTGCCATCAAGGAGGAAATTAAAA
ATGGAAATCAACTGGTTGAAGACTGTATTCTGAGTTTCAATTCATTATCT
GCTGGTATATTGGACAGAATTGAGAAGTTGATACCAATGTTGCCTAAAAT
TCTAACCAAAACTCTGGAATGCCCTGATGAATTACTTATTGTGACCCATG
GAGATTTTCATATGTGGAATATTGCATTTGCTAACAAAGGTGAAATGGAA
GCCAAATTCTTTGACTTCCAAATGTTACGTACAACATCAGGATTGGTTGA
TGTACACCATTTATTATCACAAGTCTGCACGCCTGCTACAAGGAATCAGC
ATTTGTACAAATTTTTAAACACATATCACAAGTCTTTTAAACAGGAGTGT
TTGGATCTAGGCTTGGAGGAATCACAGATTGATTACTCTTTAGAGGCGAT
AAATAAAGAGTATGTCATGCGTTCACCTTGGGGTTTTGTGTTTGGTTTCT
GTTTCATTTTACCAAGATTCTTATCAAGCAAACAGCTATCACAAGAGTTT
TATGccaaattaaatgactttgaaagCAGTAGCAGCATTGTGGAATGGAT
TTCTAAAAACGCGAGTCCAAATGTGTGGAGTGTTTTGGATATGTATGTGG
ACATGGTGCAGATAGATGATGATCTGGGTACCTTAGAAATCATGGAGAAA
TATACTCAATAGCCTCTGGctctttttaagtttttttcaaattagctaca
atttgttttttaaaagcttACCAGATTGATTTTTTTACCAGAAAGACATT
AGACAAAATGCATTTTATAGTAGGTGTCTATTTTCCTAATTAGAAGTTGA
GGTTtggccaaaatcaaaatttattaggACTCCGCTCTGttctttattga
ttttgtaagttttaagtgttaaaaatgttaaaaaaaaggacTTTTTCGTA
TACAAAGCAATCTAAGATGAAATAAACTTCTTCTGAttgtttattgaaat
ttcaaaccaCCACcattagcttgaaatattgataCCAAATCTAATCAGCT
GCTCGTTTGAAATCTACTTAGATTACGAATTAGTTTTTAACtttaagatg
aaaataaaacttGTGATACAAATCCATATTCATGTTATTAGTTGTAATAC
AAAAACGAAACGTCCAAAATATATTTAGTTTCTGGAGATTAGATTAGCTT
TTTATTTGGACTTGCATTTGCATATTTTTACAGtggaatatatttttaaa
attttgatttaagaaataaaattatttttatgc Run BLAST on NCBI transcript from alignment at scaffold_344:58034..61266+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060524 ID=TCONS_00060524|Name=TCONS_00060524|organism=Clytia hemisphaerica|type=transcript|length=3233bp|location=Sequence derived from alignment at scaffold_344:58034..61266+ (Clytia hemisphaerica)
TTGAACAACCACTCCATAAAATAAAGTTGGTAACATATTCCGCCAACCtg
ttctaacttgggacaattgatcgaaacatgggactgtggGACATGGGACA
TACGACCCTGTCTATGACCCATGTCTATGTGGTCTTGTGTGGCATACAGT
TTCTACTACTTTGTCGGTCGCTTTGTCATAATTTGGAAAATTCTGTGATA
TGATCCGGATGGTGTTGGGATAactgaagaaaatgaaaatataataaaac
TGTAAGTCATATGAGCAGTAGTAGTAAAAAGACGTGATCTGGACGTGACT
ATGTTTGTTCATTGGCCGAAAGGGGGTGAAGTTTTGGACCTTGGTAAgat
gtttgaaaagaaaactttaacgactaaaaaactaattaacatgctttcaa
cgaagatatccaggtctttcattttagggctatgcatgttagcctccact
gatgcaagttacccaatctcacggtagagCAAAACTGAATTCTTATTTCT
GTACCGCGATTTTGCATCTTTACTGTTTTGAAAGGCACTTTTATCTTTTA
AGCAATGAAAGGGTTTCATAATTTTAGCTAAAATCAAGTTTCACTTAATT
CCCCTCAGCTTTTAGATGAAAATGCCTGTTTTGgcagagagaaaaaaaat
gacCAAAGAGGAGCTTGAAGCAATAGCTCCATTTATTTTGGAAATGCGTC
GAAGAGAGCAAACACAGGAAGCTGAGCTGTTACAACACATACAAAACATT
GATCAGAAAGATGATTTCAAAGTAGAGGAGGCGGAAGAGGAGGACCATTT
TCAGAGACAAGAGatgataaaattttttgaagatcaCTTGAACACTGTAC
GTCAACACATTGATGAGCAAGAAACAAATTTAACAAATCTGCAACAAGAA
AAACTTGATCTTTtcgagaatttcaaaaaatctttacaaatcaaacacaa
acaacaacttgaacaacaaaaacaacagcaACCAAAATGAAATGTTCTCT
TcattattgatttttctttagttttgtaAATAATCATTCAGTATTTATTT
CacccattttttatttcttttatatcCTCAGTATAACATAGTAAAACAAT
TGATAATTATTGAGAAAATTGAGTttactttttaataattttattcaTCT
GTCGCCTTGAGTTATGAAATAGAAATGCAACCTGGGTAATATTACATAAT
TGGTGTCTGCAGAGAAATGGACAAAACCTTTTAAAcctaatatgaaaaaa
aatgtcttttcgaGTTCTAATGAagcttttttccaaaattctcaaatatt
tgtttaaatttttctagtgaagtaaaaagaaaatcaaatacaATGCCTTT
CACAGAAGAGCAATTAAAAGGGTTTCTGGAAAACCTTTTGAAAggtcaag
gaaagattgaaaatgttgaatttaTCCATTCAACCTCTTTGATAGCCAGC
AGTTCAAAAGGTGTAATAATTCAATATGCTAACGGCACAACCAAAAAGCT
TCATTTAAAGCTTTGTGAAGATGGTACAACTCCTGGATTCTTAAATgaca
aattgaaaatatttgaacgaGAAGAATTCTTTTACAGCAGTCTCTTACCA
GAAATGATCAAATTTCAGATAGAAAATAAAACAGATGAGAAATTAAACCA
TGAAAACAGTATCAAGTCATTGTTCTTCCCATACCATGGTAGCCATCATG
TTGAAGGGGCCggtattgttgttgttttggatCGTTTCTCACCAGAAGAA
TATTTTGTGACCAAACCTGAGGAGTTTCACACTTTACAGCAAATACATCA
TTGTATGAAGAAGATAGCAGCTTTTCATGCTGTATCATACTCAATGAAAA
TCAAGAAAGTTGTCGATTGGAATAATTACAGCCCATACCTCCCTGATGTT
CTTTTCCATCCTTTAACTGAAgatgtctcaaaaacctattTCAGTAGCAT
CTTTGCAAGTAATTTGAAAATCTTACGTGCCATCAAGGAGGAAATTAAAA
ATGGAAATCAACTGGTTGAAGACTGTATTCTGAGTTTCAATTCATTATCT
GCTGGTATATTGGACAGAATTGAGAAGTTGATACCAATGTTGCCTAAAAT
TCTAACCAAAACTCTGGAATGCCCTGATGAATTACTTATTGTGACCCATG
GAGATTTTCATATGTGGAATATTGCATTTGCTAACAAAGGTGAAATGGAA
GCCAAATTCTTTGACTTCCAAATGTTACGTACAACATCAGGATTGGTTGA
TGTACACCATTTATTATCACAAGTCTGCACGCCTGCTACAAGGAATCAGC
ATTTGTACAAATTTTTAAACACATATCACAAGTCTTTTAAACAGGAGTGT
TTGGATCTAGGCTTGGAGGAATCACAGATTGATTACTCTTTAGAGGCGAT
AAATAAAGAGTATGTCATGCGTTCACCTTGGGGTTTTGTGTTTGGTTTCT
GTTTCATTTTACCAAGATTCTTATCAAGCAAACAGCTATCACAAGAGTTT
TATGccaaattaaatgactttgaaagCAGTAGCAGCATTGTGGAATGGAT
TTCTAAAAACGCGAGTCCAAATGTGTGGAGTGTTTTGGATATGTATGTGG
ACATGGTGCAGATAGATGATGATCTGGGTACCTTAGAAATCATGGAGAAA
TATACTCAATAGCCTCTGGctctttttaagtttttttcaaattagctaca
atttgttttttaaaagcttACCAGATTGATTTTTTTACCAGAAAGACATT
AGACAAAATGCATTTTATAGTAGGTGTCTATTTTCCTAATTAGAAGTTGA
GGTTtggccaaaatcaaaatttattaggACTCCGCTCTGttctttattga
ttttgtaagttttaagtgttaaaaatgttaaaaaaaaggacTTTTTCGTA
TACAAAGCAATCTAAGATGAAATAAACTTCTTCTGAttgtttattgaaat
ttcaaaccaCCACcattagcttgaaatattgataCCAAATCTAATCAGCT
GCTCGTTTGAAATCTACTTAGATTACGAATTAGTTTTTAACtttaagatg
aaaataaaacttGTGATACAAATCCATATTCATGTTATTAGTTGTAATAC
AAAAACGAAACGTCCAAAATATATTTAGTTTCTGGAGATTAGATTAGCTT
TTTATTTGGACTTGCATTTGCATATTTTTACAGtggaatatatttttaaa
attttgatttaagaaataaaattatttttatgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060524-exon-scaffold_344-1491911889:58034..61266 | TCONS_00060524-exon-scaffold_344-1491911889:58034..61266 | Clytia hemisphaerica | exon |
| TCONS_00060524-exon-scaffold_344-1510915933:58034..61266 | TCONS_00060524-exon-scaffold_344-1510915933:58034..61266 | Clytia hemisphaerica | exon |
| TCONS_00060524-exon-scaffold_344-1575043694:58034..61266 | TCONS_00060524-exon-scaffold_344-1575043694:58034..61266 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_344 | supercontig | scaffold_344:58034..61266 + |
Blast
The following BLAST results are available for this feature:
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