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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060487 ID=TCONS_00060487|Name=TCONS_00060487|organism=Clytia hemisphaerica|type=transcript|length=3626bpRun BLAST on NCBI protein sequence of TCONS_00060487-protein >TCONS_00060487-protein ID=TCONS_00060487-protein|Name=TCONS_00060487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=626bp MVFRLRLGIGARRRERCTLLFVVVIFLVIFVGGIIYLPGGEGADSSGEGGRun BLAST on NCBI transcript from alignment at scaffold_343:69240..89593+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060487 ID=TCONS_00060487|Name=TCONS_00060487|organism=Clytia hemisphaerica|type=transcript|length=20354bp|location=Sequence derived from alignment at scaffold_343:69240..89593+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_343:69240..89593+ >TCONS_00060487 ID=TCONS_00060487|Name=TCONS_00060487|organism=Clytia hemisphaerica|type=CDS|length=24453bp|location=Sequence derived from alignment at scaffold_343:69240..89593+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060487 vs. Swiss-Prot (Human)
Match: MA1A2 (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB OS=Homo sapiens GN=MAN1A2 PE=1 SV=1) HSP 1 Score: 622.854 bits (1605), Expect = 0.000e+0 Identity = 287/466 (61.59%), Postives = 369/466 (79.18%), Query Frame = 3
Query: 654 PHHQGVETGGEPKDAQAKTRRDFVRKMMKTAWDGYQNHAMGHNELKPLAKRGHSAGIFGSSRMGATVVDALDTLYIMGLKDEFKVARDWVAQHLSFNVNTQVSVFEMNIRFVGGLLSAFALTKDEVFKIKAKELADKLLPAFKTPTGVPWALVNLNSGYGFNYNWASGGSSILAEFGSLHLEWSYLTQITGENVYLEKVNKIRKVMHDTPKSDGLYPNYFNPKTGSWGQKHVSLGALGDSFYEYLIKGWIMSGETDHLAKDMYFDAMRAIDKHLIRKSRGGFTYAGVYNYGSVESKMEHLACFSGGMFGLGSKHAPSDLQERHMELGKEIARTCRESYRNSATHIGPESFRFEGPHEAKALRQNEKYYILRPEVVETYFVMWRLTHDQKYRDWAWDAAQAIEKHCHVGVGFSGIRDVYQVPPSHDDVQQSFFLAETLKYLYLIFSDDDLMRLDEWVFNTEAHPLPV 2051
P+ G+ GG+P+D + +R+ +++MMK AWD Y+ + GHNEL+P+A++GHS IFGSS+MGAT+VDALDTLYIMGL DEF + W+ +L F+VN++VSVFE+NIRF+GGLL+A+ L+ +E+FKIKA +LA+KLLPAF TPTG+PWA+VNL SG G N+ WAS GSSILAEFG+LH+E+ +L+ +TG+ Y +KV IRK++ + +GLYPNY NP+TG WGQ H S+G LGDSFYEYL+K W+MS +TDH A+ MY DA+ AI+KHLI+KSRGG T+ G + G +E KM HLACF+GGMF LG+ + +D ++ELG EIARTC ESY +A +GPESF+F+G EA A+RQ EKYYILRPEV+ETY+ +WR THD +YR W W+AA AIEK+C V GFSG++DVY P+HDDVQQSFFLAETLKYLYL+FS DDL+ LD WVFNTEAHPLPV
Sbjct: 162 PNLVGIR-GGDPEDNDIREKREKIKEMMKHAWDNYRTYGWGHNELRPIARKGHSPNIFGSSQMGATIVDALDTLYIMGLHDEFLDGQRWIEDNLDFSVNSEVSVFEVNIRFIGGLLAAYYLSGEEIFKIKAVQLAEKLLPAFNTPTGIPWAMVNLKSGVGRNWGWASAGSSILAEFGTLHMEFIHLSYLTGDLTYYKKVMHIRKLLQKMDRPNGLYPNYLNPRTGRWGQYHTSVGGLGDSFYEYLLKAWLMSDKTDHEARKMYDDAIEAIEKHLIKKSRGGLTFIGEWKNGHLEKKMGHLACFAGGMFALGADGSRADKAGHYLELGAEIARTCHESYDRTALKLGPESFKFDGAVEAVAVRQAEKYYILRPEVIETYWYLWRFTHDPRYRQWGWEAALAIEKYCRVNGGFSGVKDVYSSTPTHDDVQQSFFLAETLKYLYLLFSGDDLLPLDHWVFNTEAHPLPV 626 The following BLAST results are available for this feature:
BLAST of TCONS_00060487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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