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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060469 ID=TCONS_00060469|Name=TCONS_00060469|organism=Clytia hemisphaerica|type=transcript|length=1378bp
aaCAAAACTTGTAAACAAATTTAATACATTATACATAGTACAGGCGCCTA
GGCATTAATCGCTTACGCTGCCaaagctttatttttcaaatgaaataaat
gtttctcgaaagataaaaaaattcactccattaagaattagtgaataatg
CACTAAGCAAAAGtggtagaatttttttataatggtgTGCAGCCAAGCTG
TTGCCACTGACGCGATGACAACATCTACAACAACATATGCAGAAGCAaca
caaaaatcaacaaaaccaacTTCTACAAGATCACTTCCAACGAACTCATC
ATCTTTCGAAGAACTTCGAAAAAGAACATTTATCTTCTATAACTTAAACA
CTCCTACAAACATCACAACAACAGTTATCAAATCTCTTATTGACAAATTC
AACATTCCTGCTGACAAGCTCATCCAGAAAATCTACAAGGACACACGATT
CAACTCAAGGTACGTGGTTTGTTTCAAGAACCTACTTCATTTCGAGACAC
TCCTCAAAGAAGGAATTACTATCAATGGAACTAAAATCAAAGGCAAAACC
GAGAAACCAAGTCGTTACTACCTCCCAAACTTTCCTGGCTACNCAAAGGC
AAAACCGAGAAACCAAGTCGTTACTACCTCCCAAACTTTCCTGGCTACTG
CTCTCAGGCTGAAGTCAAGGAAGCCCTTGCCGAAAAAGGTATTGAAAACA
TCGTCTACATCAAACAAAGAATCTCCAAGGAATTTGGCATCCCTGTGGGT
GGTTTTTTCATTGGGATTTCCAATTTAAACATGAATCACTTCTTTCTCAA
TTTTGAGGGAGATTCATACAAGGCAACTCGAATCAAGAGAAGCCATGTTG
AACCAGAACAACACGTGTTGAACGACAAATCTACAGACCCGAAACCGGAT
GACGTCACTGATCAATTGGAAGCACCCAGGGTAACGGATGATGACCTGGA
CGCCAACATGGACAGTGACGAAGACTGCGGCGGAGAGTCAACTACTTCAA
CAATAACATCAACAACGGAGAACACACCCAAAGTCGAAACCACAAGTACA
TTTACTTACAATTTAGACCCTACATTCGTTATTGGATACATCTCTACAGA
CGAGGAAGTTCCGAACGGAAAAGGaaagaagaagagaaagaagaaacCAG
TCACTATTGAGACTGAAAGCTTCCTATCCAGGGAACAAAGGAGGAAAATA
AACAGAGACTTTCATAAAAAGATCAGAAAATCCAAGAAGAAACAGAAGGC
TAAACAAAGCTAGATAATTTGTTTTTACTGTAAATATTATTCTAGCTTGT
AACATATTCATTTCTAACATTTCCTTATAAATATTCATTTATACTTGCGT
TCAGGCATTAATCGCCAGTACTGCAACC Run BLAST on NCBI protein sequence of TCONS_00060469-protein >TCONS_00060469-protein ID=TCONS_00060469-protein|Name=TCONS_00060469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MVCSQAVATDAMTTSTTTYAEATQKSTKPTSTRSLPTNSSSFEELRKRTF
IFYNLNTPTNITTTVIKSLIDKFNIPADKLIQKIYKDTRFNSRYVVCFKN
LLHFETLLKEGITINGTKIKGKTEKPSRYYLPNFPGYXKAKPRNQVVTTS
QTFLATALRLKSRKPLPKKVLKTSSTSNKESPRNLASLWVVFSLGFPI Run BLAST on NCBI transcript from alignment at scaffold_342:15791..17965- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060469 ID=TCONS_00060469|Name=TCONS_00060469|organism=Clytia hemisphaerica|type=transcript|length=2175bp|location=Sequence derived from alignment at scaffold_342:15791..17965- (Clytia hemisphaerica)
AACAAAACTTGTAAACAAATTTAATACATTATACATAGTACAGGCGCCTA
GGCATTAATCGCTTACGCTGCCAAAGCTTTATTTTTCAAATGAAATAAAT
GTTTCTCGAAAGGTATGTATCAGCTCTACGATAACCTCGAACTTTTACTC
GTTTTCTTTTCGAAATTTGGATGGGAAGGGTGGAAAACATATTAAAATCA
ATTGAATTTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAGTCAAGACGGCATTCGAAATGGATAGAACGCATGCGTAACTTGACTT
TTGACCGACCACAATGGTTAAAATTGCCTGTCAAAAGTGTCAAAGTTGAC
GTCAAATTATTCAGATTATAGATAAAAAAATTCACTCCATTAAGAATTAG
TGAATAAGGTATGTATCAGCTCTACGAAAACCTCGAACTTATACTCGTCT
TCTTTTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCATTCGAAATGGATAGAACGCATGCGTAACTTGACTTTTGACAGACCA
CAATGGTTAAAATTGCCTGTCAAAATTGTCAAGTTGACGTCAAATATTTC
AGATTACAGATAAAAAAATTCACTCCATTAAGAATTAGTGAATAATGCAC
TAAGCAAAAGTGGTAGAATTTTTTTATAATGGTGTGCAGCCAAGCTGTTG
CCACTGACGCGATGACAACATCTACAACAACATATGCAGAAGCAACACAA
AAATCAACAAAACCAACTTCTACAAGATCACTTCCAACGAACTCATCATC
TTTCGAAGAACTTCGAAAAAGAACATTTATCTTCTATAACTTAAACACTC
CTACAAACATCACAACAACAGTTATCAAATCTCTTATTGACAAATTCAAC
ATTCCTGCTGACAAGCTCATCCAGAAAATCTACAAGGACACACGATTCAA
CTCAAGGTACGTGGTTTGTTTCAAGAACCTACTTCATTTCGAGACACTCC
TCAAAGAAGGAATTACTATCAATGGAACTAAAATCAAAGGCAAAACCGAG
AAACCAAGTCGTTACTACCTCCCAAACTTTCCTGGCTACNCAAAGGCAAA
ACCGAGAAACCAAGTCGTTACTACCTCCCAAACTTTCCTGGCTACTGCTC
TCAGGCTGAAGTCAAGGAAGCCCTTGCCGAAAAAGGTATTGAAAACATCG
TCTACATCAAACAAAGAATCTCCAAGGAATTTGGCATCCCTGTGGGTGGT
TTTTTCATTGGGATTTCCAATTTAAACATGAATCACTTCTTTCTCAATTT
TGAGGGAGATTCATACAAGGCAACTCGAATCAAGAGAAGCCATGTTGAAC
CAGAACAACACGTGTTGAACGACAAATCTACAGACCCGAAACCGGATGAC
GTCACTGATCAATTGGAAGCACCCAGGGTAACGGATGATGACCTGGACGC
CAACATGGACAGTGACGAAGACTGCGGCGGAGAGTCAACTACTTCAACAA
TAACATCAACAACGGAGAACACACCCAAAGTCGAAACCACAAGTACATTT
ACTTACAATTTAGACCCTACATTCGTTATTGGATACATCTCTACAGACGA
GGAAGTTCCGAACGGAAAAGGAAAGAAGAAGAGAAAGAAGAAACCAGTCA
CTATTGAGACTGAAAGCTTCCTATCCAGGGAACAAAGGAGGAAAATAAAC
AGAGACTTTCATAAAAAGATCAGAAAATCCAAGAAGAAACAGAAGGCTAA
ACAAAGCTAGATAATTTGTTTTTACTGTAAATATTATTCTAGCTTGTAAC
ATATTCATTTCTAACATTTCCTTATAAATATTCATTTATACTTGCGTTCA
GGCATTAATCGCCAGTACTGCAACC Coding sequence (CDS) from alignment at scaffold_342:15791..17965- >TCONS_00060469 ID=TCONS_00060469|Name=TCONS_00060469|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_342:15791..17965- (Clytia hemisphaerica)
ATGGTGTGCAGCCAAGCTGTTGCCACTGACGCGATGACAACATCTACAAC
AACATATGCAGAAGCAACACAAAAATCAACAAAACCAACTTCTACAAGAT
CACTTCCAACGAACTCATCATCTTTCGAAGAACTTCGAAAAAGAACATTT
ATCTTCTATAACTTAAACACTCCTACAAACATCACAACAACAGTTATCAA
ATCTCTTATTGACAAATTCAACATTCCTGCTGACAAGCTCATCCAGAAAA
TCTACAAGGACACACGATTCAACTCAAGGTACGTGGTTTGTTTCAAGAAC
CTACTTCATTTCGAGACACTCCTCAAAGAAGGAATTACTATCAATGGAAC
TAAAATCAAAGGCAAAACCGAGAAACCAAGTCGTTACTACCTCCCAAACT
TTCCTGGCTACNCAAAGGCAAAACCGAGAAACCAAGTCGTTACTACCTCC
CAAACTTTCCTGGCTACTGCTCTCAGGCTGAAGTCAAGGAAGCCCTTGCC
GAAAAAGGTATTGAAAACATCGTCTACATCAAACAAAGAATCTCCAAGGA
ATTTGGCATCCCTGTGGGTGGTTTTTTCATTGGGATTTCCAATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060469-exon-scaffold_342-1575043694:17854..17965 | TCONS_00060469-exon-scaffold_342-1575043694:17854..17965 | Clytia hemisphaerica | exon |
| TCONS_00060469-exon-scaffold_342-1575043694:15791..17056 | TCONS_00060469-exon-scaffold_342-1575043694:15791..17056 | Clytia hemisphaerica | exon |
| TCONS_00060469-exon-scaffold_342-1510915933:17854..17965 | TCONS_00060469-exon-scaffold_342-1510915933:17854..17965 | Clytia hemisphaerica | exon |
| TCONS_00060469-exon-scaffold_342-1510915933:15791..17056 | TCONS_00060469-exon-scaffold_342-1510915933:15791..17056 | Clytia hemisphaerica | exon |
| TCONS_00060469-exon-scaffold_342-1491911889:17854..17965 | TCONS_00060469-exon-scaffold_342-1491911889:17854..17965 | Clytia hemisphaerica | exon |
| TCONS_00060469-exon-scaffold_342-1491911889:15791..17056 | TCONS_00060469-exon-scaffold_342-1491911889:15791..17056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_342 | supercontig | scaffold_342:15791..17965 - |
Blast
The following BLAST results are available for this feature:
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