TCONS_00060445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060445
Unique NameTCONS_00060445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060445 ID=TCONS_00060445|Name=TCONS_00060445|organism=Clytia hemisphaerica|type=transcript|length=295bp
GTAATTTCAAATCCAACGAATCTAGAAGGATCTAGCATGATTTTAATGGA
AAAGTCCCTAGACCCTAGTGTAGAGAATGCGCATCGAATGATGGAATCGA
ATGAACGCGTTTCTAATCCAACGAACTCAGAGGCTACTTTCACGAGGTCA
GTTGAACAAACTAAAGCTCTGCATTCAGGAAATTCCTTGAGCTCAAATGT
ACGCGTCTCCGAGATAACTTCAAGTTCGTTCGAACAATCTAAAGCTTCAT
ATCAAAGGAATTCTCCGGATGAACTCGTTTCTGTCTCATTGTCTG
Run BLAST on NCBI

transcript from alignment at scaffold_341:75155..75449

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060445 ID=TCONS_00060445|Name=TCONS_00060445|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at scaffold_341:75155..75449 (Clytia hemisphaerica)
CAGACAATGAGACAGAAACGAGTTCATCCGGAGAATTCCTTTGATATGAA
GCTTTAGATTGTTCGAACGAACTTGAAGTTATCTCGGAGACGCGTACATT
TGAGCTCAAGGAATTTCCTGAATGCAGAGCTTTAGTTTGTTCAACTGACC
TCGTGAAAGTAGCCTCTGAGTTCGTTGGATTAGAAACGCGTTCATTCGAT
TCCATCATTCGATGCGCATTCTCTACACTAGGGTCTAGGGACTTTTCCAT
TAAAATCATGCTAGATCCTTCTAGATTCGTTGGATTTGAAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038011XLOC_038011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060445-exon-scaffold_341-1491911889:75155..75449TCONS_00060445-exon-scaffold_341-1491911889:75155..75449Clytia hemisphaericaexon
TCONS_00060445-exon-scaffold_341-1510915933:75155..75449TCONS_00060445-exon-scaffold_341-1510915933:75155..75449Clytia hemisphaericaexon
TCONS_00060445-exon-scaffold_341-1575043694:75155..75449TCONS_00060445-exon-scaffold_341-1575043694:75155..75449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_341supercontigscaffold_341:75155..75449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.40132	0	0	0.554989	0	1.58731	1.98136	2.4276	0.429567	2.08474	1.09634	3.01075	4.54792	10.7496	8.27584	4.94311	3.16658	1.74992	4.12012	0.397904	0.58225	2.35934	1.28699	3.9767	3.94346	0.564308	0	6.39494	6.51543
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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