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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060312 ID=TCONS_00060312|Name=TCONS_00060312|organism=Clytia hemisphaerica|type=transcript|length=934bp
tttcgGAACCTGTTTTACAAATATTCTCACAATGAGGATCAAATTACAAT
AGTGTTGAAAAATATGCTTGAAAATTCAAACAATAAATAGAATGCTTTCC
TCTGTGATGATTGGTCCTTTACACAAAAAAATATACCCCTTTTAAttgtt
tgaattgaaaatttaaacaatAGTTATGTGCTTTCTAGGCTGTGATTGGC
TGACTTTGAATTTTTAGAACAATAGTTATTCTGTTCTGATTATTTTGCGA
TTcaggttttgatgttatatAAAGGAAAGTAATGGCAGTCAATTTACAAT
TCACTCATTACGATCTAAAGTCATGGCCAAACGAAGATCTGAAGAAGCAG
GACCTAGCACaccgaaaaaaaacaatttgaatgaCGgTAGCATGTTGTGT
TACGTTCATTCAGTATCACCATTGTCCAAAAAAAATGATACAACATGGTT
CAACATGACATTGCAAACCCCGTCTGAAGTTCGAAGGGCAGTGTCTTTTA
CACCCGAAAAGCAGAAATCGTTCAAAGATATGGAGGTGGCCAAGTGCGGT
GTTGAGATAACAAACTACGACAGCAAAAATGAAGATATCGTCATTAAGAA
GGGAACAAGAATGAAAGTAGTCGGCGATATGCCATTCGAACACAACGCCA
AAAACGGCAGTGGACAAATCAATCTGTGCCTTACCGACTTGTACAGCTTG
GCCCCAGAACAGATCATTTCCAAAATTACATTAAAAGTTGTCAAGGTTGA
AGACGCAATGAACACCGATTCAGCAGATAAGTTATCTATTCAGTACGTTT
ATGTCGCAGATAATACATCCGTTATGAAAGTTGTCTTGTTCGGAGAACAT
GTCGATACATTGAATGAAGGCAAGACATATCATCTTAACAATTTGAGGTT
GAAATCATACAACCATGAACGGTGAGTACAGTCA Run BLAST on NCBI protein sequence of TCONS_00060312-protein >TCONS_00060312-protein ID=TCONS_00060312-protein|Name=TCONS_00060312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MAKRRSEEAGPSTPKKNNLNDGSMLCYVHSVSPLSKKNDTTWFNMTLQTP
SEVRRAVSFTPEKQKSFKDMEVAKCGVEITNYDSKNEDIVIKKGTRMKVV
GDMPFEHNAKNGSGQINLCLTDLYSLAPEQIISKITLKVVKVEDAMNTDS
ADKLSIQYVYVADNTSVMKVVLFGEHVDTLNEGKTYHLNNLRLKSYNHER Run BLAST on NCBI transcript from alignment at scaffold_340:14334..15423+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060312 ID=TCONS_00060312|Name=TCONS_00060312|organism=Clytia hemisphaerica|type=transcript|length=1090bp|location=Sequence derived from alignment at scaffold_340:14334..15423+ (Clytia hemisphaerica)
tttcgGAACCTGTTTTACAAATATTCTCACAATGAGGATCAAATTACAAT
AGTGTTGAAAAATATGCTTGAAAATTCAAACAATAAATAGAATGCTTTCC
TCTGTGATGATTGGTCCTTTACACAAAAAAATATACCCCTTTTAAttgtt
tgaattgaaaatttaaacaatAGTTATGTGCTTTCTAGGCTGTGATTGGC
TGACTTTGAATTTTTAGAACAATAGTTATTCTGTTCTGATTATTTTGCGA
TTcaggttttgatgttatatAAAGGAAAGTAATGGCAGTCAATTTACAAT
TCACTCATTACGATCTAAAGTCATGGCCAAACGAAGATCTGAAGAAGCAG
GACCTAGCACaccgaaaaaaaacaatttgaatgaCGGTAAGAAAGGAACT
TcatatctcaatttttttataattttgggTAATTATTGAAGGTCTTAATT
ATTGGATCCTCATGATAGAATTCCCtgcttatatttttttatgtagTACG
ACTTGAAATCAAGTTTTTAattggttttctttttctttgtaggTAGCATG
TTGTGTTACGTTCATTCAGTATCACCATTGTCCAAAAAAAATGATACAAC
ATGGTTCAACATGACATTGCAAACCCCGTCTGAAGTTCGAAGGGCAGTGT
CTTTTACACCCGAAAAGCAGAAATCGTTCAAAGATATGGAGGTGGCCAAG
TGCGGTGTTGAGATAACAAACTACGACAGCAAAAATGAAGATATCGTCAT
TAAGAAGGGAACAAGAATGAAAGTAGTCGGCGATATGCCATTCGAACACA
ACGCCAAAAACGGCAGTGGACAAATCAATCTGTGCCTTACCGACTTGTAC
AGCTTGGCCCCAGAACAGATCATTTCCAAAATTACATTAAAAGTTGTCAA
GGTTGAAGACGCAATGAACACCGATTCAGCAGATAAGTTATCTATTCAGT
ACGTTTATGTCGCAGATAATACATCCGTTATGAAAGTTGTCTTGTTCGGA
GAACATGTCGATACATTGAATGAAGGCAAGACATATCATCTTAACAATTT
GAGGTTGAAATCATACAACCATGAACGGTGAGTACAGTCA Coding sequence (CDS) from alignment at scaffold_340:14334..15423+ >TCONS_00060312 ID=TCONS_00060312|Name=TCONS_00060312|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at scaffold_340:14334..15423+ (Clytia hemisphaerica)
ATGGCCAAACGAAGATCTGAAGAAGCAGGACCTAGCACaccgaaaaaaaa
caatttgaatgaCGgTAGCATGTTGTGTTACGTTCATTCAGTATCACCAT
TGTCCAAAAAAAATGATACAACATGGTTCAACATGACATTGCAAACCCCG
TCTGAAGTTCGAAGGGCAGTGTCTTTTACACCCGAAAAGCAGAAATCGTT
CAAAGATATGGAGGTGGCCAAGTGCGGTGTTGAGATAACAAACTACGACA
GCAAAAATGAAGATATCGTCATTAAGAAGGGAACAAGAATGAAAGTAGTC
GGCGATATGCCATTCGAACACAACGCCAAAAACGGCAGTGGACAAATCAA
TCTGTGCCTTACCGACTTGTACAGCTTGGCCCCAGAACAGATCATTTCCA
AAATTACATTAAAAGTTGTCAAGGTTGAAGACGCAATGAACACCGATTCA
GCAGATAAGTTATCTATTCAGTACGTTTATGTCGCAGATAATACATCCGT
TATGAAAGTTGTCTTGTTCGGAGAACATGTCGATACATTGAATGAAGGCA
AGACATATCATCTTAACAATTTGAGGTTGAAATCATACAACCATGAACGG
TGAATGGCCAAACGAAGATCTGAAGAAGCAGGACCTAGCACaccgaaaaa
aaacaatttgaatgaCGgTAGCATGTTGTGTTACGTTCATTCAGTATCAC
CATTGTCCAAAAAAAATGATACAACATGGTTCAACATGACATTGCAAACC
CCGTCTGAAGTTCGAAGGGCAGTGTCTTTTACACCCGAAAAGCAGAAATC
GTTCAAAGATATGGAGGTGGCCAAGTGCGGTGTTGAGATAACAAACTACG
ACAGCAAAAATGAAGATATCGTCATTAAGAAGGGAACAAGAATGAAAGTA
GTCGGCGATATGCCATTCGAACACAACGCCAAAAACGGCAGTGGACAAAT
CAATCTGTGCCTTACCGACTTGTACAGCTTGGCCCCAGAACAGATCATTT
CCAAAATTACATTAAAAGTTGTCAAGGTTGAAGACGCAATGAACACCGAT
TCAGCAGATAAGTTATCTATTCAGTACGTTTATGTCGCAGATAATACATC
CGTTATGAAAGTTGTCTTGTTCGGAGAACATGTCGATACATTGAATGAAG
GCAAGACATATCATCTTAACAATTTGAGGTTGAAATCATACAACCATGAA
CGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060312-exon-scaffold_340-1491911889:14334..14719 | TCONS_00060312-exon-scaffold_340-1491911889:14334..14719 | Clytia hemisphaerica | exon |
| TCONS_00060312-exon-scaffold_340-1510915933:14334..14719 | TCONS_00060312-exon-scaffold_340-1510915933:14334..14719 | Clytia hemisphaerica | exon |
| TCONS_00060312-exon-scaffold_340-1575043694:14334..14719 | TCONS_00060312-exon-scaffold_340-1575043694:14334..14719 | Clytia hemisphaerica | exon |
| TCONS_00060312-exon-scaffold_340-1491911889:14876..15423 | TCONS_00060312-exon-scaffold_340-1491911889:14876..15423 | Clytia hemisphaerica | exon |
| TCONS_00060312-exon-scaffold_340-1510915933:14876..15423 | TCONS_00060312-exon-scaffold_340-1510915933:14876..15423 | Clytia hemisphaerica | exon |
| TCONS_00060312-exon-scaffold_340-1575043694:14876..15423 | TCONS_00060312-exon-scaffold_340-1575043694:14876..15423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_340 | supercontig | scaffold_340:14334..15423 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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