Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060257 ID=TCONS_00060257|Name=TCONS_00060257|organism=Clytia hemisphaerica|type=transcript|length=1914bp
NTATCAGATTTTAAAGGAACCACTTTCAGAGGACCATAAATCACATCAGC
TAAGTCAAACAGTGACACGTTTCAAGATTTTACCAACATACGGCTTGCTA
ATGCGCTTTGTACAATACACTACACCATACCACTTCCCCAAGAGAGAATC
CTCAGTCACTGGAGGGCTGAGTGTTTTCCAAGTTGCTCTTAAGATATCTG
CAGCAAAATCACTCTCATTCTCGGTATCATCAAAATCAGTATCAACAAAA
TCTGATTCACTTTCCTCGGTTTCTGAAGCAGGTGCTTTCCTCTTGGAAGA
ACTTGCTGTAGTTGTTGCTGGAACAATCATGACTGGCTTTATCCCATCAA
CTTTGCACTTGGCTTTACTACAAGCTGACTTCAAAATGTCCTGACACACT
GGACATTGCTTGAGCTCGAATGCTTCGCATTTTGGTTTTTCACAAATACA
TTTCTCTTTGCACTTGAGAAATGCATGTTTTGTATCTTCCTTTTTTTTGG
CAGTGGCTTCCTTACTTTTGACTTGCTCTTGTTTCTTACTCTCGATGTCT
TTCAGtaaagtgagcacatttttggCCTTCATTGATCCATGGACTTGTGT
GATCCTTGTATTTTTCTTAGACAGCTTTGGTTTAACCTTTTGCACAGGCA
AGAAACCAGGGATTTCTTTCAGCACGATGCTCTTTTCATGCAATTCATCT
ATGATACCCATGGCCTGGTtgaatttatcttgccaatacTGTGAGCCACG
TCTTTTATCAGGAGAGACAATGGACAAAGTTGATGATGTTGAAATTGCAG
ACGAGTTTGCATCGTCATTATTTGTATCGACAACTGCAGCAGCCCTTTCA
AATTTATCTTGCTGCATCATCTCTACGCTTAGTTTTGTTGACGTGATACT
AACCTTTCTTGCAGCGTTAATGATACCCTCTTTGGAAACCCATTTATCTC
AGATGTTTGCTAGAATAACCATGAAGGCTTCTCGACTTAAAGTGTTAAAG
TCAGTAGACATTgatgctttttctttttcatactcttGGTGAATGTTCTT
GTTTAACTAGTCCAAAAGTTGAGTTATCCTGTTGTGTCTGGTGGTGTCAC
AAACAgctgtattttttttgaaaggagGAATTCAAGAACCTTGTGGTTCA
GCCGAGAACTATGCCCATCTGATAGTAAAACTACTGGCCTTTCAACTCCT
TTCAGCTCCAAATTCACGAGCAGCGGCAAGAAAGGTTTCGTGAGTAGAAA
CTCCATTTTAGAAGGTTAGGTATCTTTTCTGCAGCTACAGGAGGGACCAT
TGCACTTGTTATTCCTATGGATTTGAAAATCACTTGGCACATGCACACAT
CACCTGAAATGAAGATGATTATATATCATCTTTCTTGTTCTAAGTTGTAA
GAGTCACAGAGATTGTGTCACAGATGACAGCAGAAACTAGAAAAACAGTT
TTGGTGACAGCTTGACAAATTTCTGTCCACCTTTTAATTTTCTGTTGGTG
TAGTCTCGCACTCGAAGGACATCAAGTATCAATTTTTCAAGCTCCTTTTT
GTTAATTGCCTGCATACACCTGTTTTTGTTCTTCAGATATTGTACAATCA
TATTTTCTTCTTGTGATGTTAAGATTTTACAATACAATTTTTCTTCACCA
GTTACAACTTTGCCATCAAGTCGCTTATTAATTGTTTCACGGTCCTTTTT
ATCAAGGGAAATTGACCTGTTTTAAGTGCTGCATAGCCATGTTTGCCATT
TTCTCTCCACCAGGCCTCAGCTGCCttcaattgtttttctttttcacttg
TTTGCTTTCTTACAACCAATGCGCCTCCGCTTTTGTCAATGGGTttgatg
atttgaaattttttttctggtgtATACGCATAGAGAACTTGGgcttcatt
ttttatatttacta Run BLAST on NCBI transcript from alignment at scaffold_339:440863..442886+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060257 ID=TCONS_00060257|Name=TCONS_00060257|organism=Clytia hemisphaerica|type=transcript|length=2024bp|location=Sequence derived from alignment at scaffold_339:440863..442886+ (Clytia hemisphaerica)
NTATCAGATTTTAAAGGAACCACTTTCAGAGGACCATAAATCACATCAGC
TAAGTCAAACAGTGACACATCTGGCAAATGAGCTGGTGTATCTTCAAGAA
TGGTACCAGAGCCTACTTTGGGCTTCAAGCACCTAACTTCCAATTTCTCA
AAAAGCCCGTTTTCATCAGCCAAGAAACGTTTCAAGATTTTACCAACATA
CGGCTTGCTAATGCGCTTTGTACAATACACTACACCATACCACTTCCCCA
AGAGAGAATCCTCAGTCACTGGAGGGCTGAGTGTTTTCCAAGTTGCTCTT
AAGATATCTGCAGCAAAATCACTCTCATTCTCGGTATCATCAAAATCAGT
ATCAACAAAATCTGATTCACTTTCCTCGGTTTCTGAAGCAGGTGCTTTCC
TCTTGGAAGAACTTGCTGTAGTTGTTGCTGGAACAATCATGACTGGCTTT
ATCCCATCAACTTTGCACTTGGCTTTACTACAAGCTGACTTCAAAATGTC
CTGACACACTGGACATTGCTTGAGCTCGAATGCTTCGCATTTTGGTTTTT
CACAAATACATTTCTCTTTGCACTTGAGAAATGCATGTTTTGTATCTTCC
TTTTTTTTGGCAGTGGCTTCCTTACTTTTGACTTGCTCTTGTTTCTTACT
CTCGATGTCTTTCAGtaaagtgagcacatttttggCCTTCATTGATCCAT
GGACTTGTGTGATCCTTGTATTTTTCTTAGACAGCTTTGGTTTAACCTTT
TGCACAGGCAAGAAACCAGGGATTTCTTTCAGCACGATGCTCTTTTCATG
CAATTCATCTATGATACCCATGGCCTGGTtgaatttatcttgccaatacT
GTGAGCCACGTCTTTTATCAGGAGAGACAATGGACAAAGTTGATGATGTT
GAAATTGCAGACGAGTTTGCATCGTCATTATTTGTATCGACAACTGCAGC
AGCCCTTTCAAATTTATCTTGCTGCATCATCTCTACGCTTAGTTTTGTTG
ACGTGATACTAACCTTTCTTGCAGCGTTAATGATACCCTCTTTGGAAACC
CATTTATCTCAGATGTTTGCTAGAATAACCATGAAGGCTTCTCGACTTAA
AGTGTTAAAGTCAGTAGACATTgatgctttttctttttcatactcttGGT
GAATGTTCTTGTTTAACTAGTCCAAAAGTTGAGTTATCCTGTTGTGTCTG
GTGGTGTCACAAACAgctgtattttttttgaaaggagGAATTCAAGAACC
TTGTGGTTCAGCCGAGAACTATGCCCATCTGATAGTAAAACTACTGGCCT
TTCAACTCCTTTCAGCTCCAAATTCACGAGCAGCGGCAAGAAAGGTTTCG
TGAGTAGAAACTCCATTTTAGAAGGTTAGGTATCTTTTCTGCAGCTACAG
GAGGGACCATTGCACTTGTTATTCCTATGGATTTGAAAATCACTTGGCAC
ATGCACACATCACCTGAAATGAAGATGATTATATATCATCTTTCTTGTTC
TAAGTTGTAAGAGTCACAGAGATTGTGTCACAGATGACAGCAGAAACTAG
AAAAACAGTTTTGGTGACAGCTTGACAAATTTCTGTCCACCTTTTAATTT
TCTGTTGGTGTAGTCTCGCACTCGAAGGACATCAAGTATCAATTTTTCAA
GCTCCTTTTTGTTAATTGCCTGCATACACCTGTTTTTGTTCTTCAGATAT
TGTACAATCATATTTTCTTCTTGTGATGTTAAGATTTTACAATACAATTT
TTCTTCACCAGTTACAACTTTGCCATCAAGTCGCTTATTAATTGTTTCAC
GGTCCTTTTTATCAAGGGAAATTGACCTGTTTTAAGTGCTGCATAGCCAT
GTTTGCCATTTTCTCTCCACCAGGCCTCAGCTGCCttcaattgtttttct
ttttcacttgTTTGCTTTCTTACAACCAATGCGCCTCCGCTTTTGTCAAT
GGGTttgatgatttgaaattttttttctggtgtATACGCATAGAGAACTT
GGgcttcattttttatatttacta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060257-exon-scaffold_339-1491911889:440863..440930 | TCONS_00060257-exon-scaffold_339-1491911889:440863..440930 | Clytia hemisphaerica | exon |
| TCONS_00060257-exon-scaffold_339-1510915933:440863..440930 | TCONS_00060257-exon-scaffold_339-1510915933:440863..440930 | Clytia hemisphaerica | exon |
| TCONS_00060257-exon-scaffold_339-1575043694:440863..440930 | TCONS_00060257-exon-scaffold_339-1575043694:440863..440930 | Clytia hemisphaerica | exon |
| TCONS_00060257-exon-scaffold_339-1491911889:441041..442886 | TCONS_00060257-exon-scaffold_339-1491911889:441041..442886 | Clytia hemisphaerica | exon |
| TCONS_00060257-exon-scaffold_339-1510915933:441041..442886 | TCONS_00060257-exon-scaffold_339-1510915933:441041..442886 | Clytia hemisphaerica | exon |
| TCONS_00060257-exon-scaffold_339-1575043694:441041..442886 | TCONS_00060257-exon-scaffold_339-1575043694:441041..442886 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:440863..442886 + |
Blast
The following BLAST results are available for this feature:
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