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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060295 ID=TCONS_00060295|Name=TCONS_00060295|organism=Clytia hemisphaerica|type=transcript|length=1727bp
TGGCAAAGGTAACATTGGCTAGGCTGTCTTTGCCCCTGCAAGTGTATATT
ATATAAAGTTACATTTGCGATATCCCACCTTGCAGAAGGATTGTTGGCCA
TCAAAGTGCGGAAGGCTTTATCGTAGGTGTACCAACCAAAGAAAGTGTAA
TCATTTGCCAGTTGAGCAATGTATATTTGATAGGCTAAGAGCTGATGAAT
CAAGTGCGGATGGTAGACTAATGAGGCCTGAAAATATCTTGACCAAGCCA
TCAACCAGGAATTAAGGTCCATGACTTTGGCCTTCTTAGACAGGTGTTGA
TTGTGAGAAGATGACAACTCATTCCTTTGTAAAGAAATATTCCCATCCCC
GTCGAAAGCCAGTGAAACAGATGAATTCGAAGGTCTGCCAACATTTGTTG
GAAGAAGATAATCAAAATCAATAAACTCACCGTTTTTGATCTGCTTTAAG
ATTTTTGCTGGGATTGCAGTCGGTACCGTGAAGGCGGGAGTCGGGGCGGC
GGAGAGAATGGGCGTATTGTTTGTGTTTGTTGGTGTAGCTGAGGCGATTG
CTTGTGAAGAGTGCTGGACAGCGTTTAAGCGGTTGTCGACGAGAGTGTTG
ACTAATTGAAGTAAAGTATTGCTGTTCAAAGCCATCGGAGCCACTGAAGT
TTCGGCATTTGATACGCCCAAAGGCTGTAAAGGGCTTAGAGGAGAAGTCG
TGGCAACAGCGGCAATGTCGTCCAGTGACGAGTATATTCCGAGCAGTTGG
TCTTCTTCCATAACAACGATTGGTTCTTCTTTGAAAATCACTTCTCAAAG
ATGTAGACTTGAGTGACAACCCGATTAACGAGAGACTTTATATAGAGTCC
AAGCTAAGAAACCGGCAGCCGAACTATACATCCTAACCGCCCCGGCACAG
GGTAGGTGACTCAATCGACTAGGAATTAACCTAAgctaaaatttagctcc
aaatATAGgatatattcttataattattgatattcactaaaAACACCGTT
CGTTGGGTACTGCAGTAGAGCATGTGACATAACTCACGTACAGCACTTAA
CTTGTCTTCTGTTCGAATATAATTTTGGCCATTACCAGGCTTGACTCaga
ccagacggtactaatcaaaCGTTTgattgtgatcgaagtaatcaatacCG
TAGATTCGTCTATTATTGACACCCCTCCTTTGAACTTGACATACCTTAAG
GGTATAAATTTTTTCGCGGTGATTATATTTCGCAAATTTCGTCTTTTTCG
TAAAATATAATCCCTCGCGAAAGTTTTCAAACTCTCATCTCTCGCTAAAT
TTGCGACatttaatcctcgcgaaaattgAATCTTTACACTAAAATTCTTT
CAGCTATGTAATTTGAATAGATTTTTATTCCTCGTAGCcgttcaagttat
ggagactttACTGTACACATAAAATCTTGTAATCAAACTaacgaaaaatg
tgaaaatctgaaaagttACAGTCGAAGTTagtcgcgaaaataagtcccgc
gaaaattaagttATTTCGCGAGGGAAGctgtctcgcgaaaattagttgcc
gcgaaaattagttcccataaggtagctgtaggctggtcttcaaaataaaa
aatcaaacataaagaaatacataccaaagttaccaatcaatcagtaaatt
gtactctccctatcacTTCACATATTGTTGATGTatcagaaattaaaaaa
aaaaaactttaacggTATAGtcatcac Run BLAST on NCBI protein sequence of TCONS_00060295-protein >TCONS_00060295-protein ID=TCONS_00060295-protein|Name=TCONS_00060295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MEEDQLLGIYSSLDDIAAVATTSPLSPLQPLGVSNAETSVAPMALNSNTL
LQLVNTLVDNRLNAVQHSSQAIASATPTNTNNTPILSAAPTPAFTVPTAI
PAKILKQIKNGEFIDFDYLLPTNVGRPSNSSVSLAFDGDGNISLQRNELS
SSHNQHLSKKAKVMDLNSWLMAWSRYFQASLVYHPHLIHQLLAYQIYIAQ
LANDYTFFGWYTYDKAFRTLMANNPSARWDIANVTLYNIHLQGQRQPSQC
YLC Run BLAST on NCBI transcript from alignment at scaffold_339:244561..246287 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060295 ID=TCONS_00060295|Name=TCONS_00060295|organism=Clytia hemisphaerica|type=transcript|length=1727bp|location=Sequence derived from alignment at scaffold_339:244561..246287 (Clytia hemisphaerica)
gtgatgaCTATAccgttaaagttttttttttttaatttctgatACATCAA
CAATATGTGAAgtgatagggagagtacaatttactgattgattggtaact
ttggtatgtatttctttatgtttgattttttattttgaagaccagcctac
agctaccttatgggaactaattttcgcggcaactaattttcgcgagacag
CTTCCCTCGCGAAATaacttaattttcgcgggacttattttcgcgactAA
CTTCGACTGTaacttttcagattttcacatttttcgttAGTTTGATTACA
AGATTTTATGTGTACAGTaaagtctccataacttgaacgGCTACGAGGAA
TAAAAATCTATTCAAATTACATAGCTGAAAGAATTTTAGTGTAAAGATTc
aattttcgcgaggattaaatGTCGCAAATTTAGCGAGAGATGAGAGTTTG
AAAACTTTCGCGAGGGATTATATTTTACGAAAAAGACGAAATTTGCGAAA
TATAATCACCGCGAAAAAATTTATACCCTTAAGGTATGTCAAGTTCAAAG
GAGGGGTGTCAATAATAGACGAATCTACGgtattgattacttcgatcaca
atcAAACGtttgattagtaccgtctggtctGAGTCAAGCCTGGTAATGGC
CAAAATTATATTCGAACAGAAGACAAGTTAAGTGCTGTACGTGAGTTATG
TCACATGCTCTACTGCAGTACCCAACGAACGGTGTTtttagtgaatatca
ataattataagaatatatcCTATatttggagctaaattttagcTTAGGTT
AATTCCTAGTCGATTGAGTCACCTACCCTGTGCCGGGGCGGTTAGGATGT
ATAGTTCGGCTGCCGGTTTCTTAGCTTGGACTCTATATAAAGTCTCTCGT
TAATCGGGTTGTCACTCAAGTCTACATCTTTGAGAAGTGATTTTCAAAGA
AGAACCAATCGTTGTTATGGAAGAAGACCAACTGCTCGGAATATACTCGT
CACTGGACGACATTGCCGCTGTTGCCACGACTTCTCCTCTAAGCCCTTTA
CAGCCTTTGGGCGTATCAAATGCCGAAACTTCAGTGGCTCCGATGGCTTT
GAACAGCAATACTTTACTTCAATTAGTCAACACTCTCGTCGACAACCGCT
TAAACGCTGTCCAGCACTCTTCACAAGCAATCGCCTCAGCTACACCAACA
AACACAAACAATACGCCCATTCTCTCCGCCGCCCCGACTCCCGCCTTCAC
GGTACCGACTGCAATCCCAGCAAAAATCTTAAAGCAGATCAAAAACGGTG
AGTTTATTGATTTTGATTATCTTCTTCCAACAAATGTTGGCAGACCTTCG
AATTCATCTGTTTCACTGGCTTTCGACGGGGATGGGAATATTTCTTTACA
AAGGAATGAGTTGTCATCTTCTCACAATCAACACCTGTCTAAGAAGGCCA
AAGTCATGGACCTTAATTCCTGGTTGATGGCTTGGTCAAGATATTTTCAG
GCCTCATTAGTCTACCATCCGCACTTGATTCATCAGCTCTTAGCCTATCA
AATATACATTGCTCAACTGGCAAATGATTACACTTTCTTTGGTTGGTACA
CCTACGATAAAGCCTTCCGCACTTTGATGGCCAACAATCCTTCTGCAAGG
TGGGATATCGCAAATGTAACTTTATATAATATACACTTGCAGGGGCAAAG
ACAGCCTAGCCAATGTTACCTTTGCCA Coding sequence (CDS) from alignment at scaffold_339:244561..246287 >TCONS_00060295 ID=TCONS_00060295|Name=TCONS_00060295|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_339:244561..246287 (Clytia hemisphaerica)
ATGGAAGAAGACCAACTGCTCGGAATATACTCGTCACTGGACGACATTGC
CGCTGTTGCCACGACTTCTCCTCTAAGCCCTTTACAGCCTTTGGGCGTAT
CAAATGCCGAAACTTCAGTGGCTCCGATGGCTTTGAACAGCAATACTTTA
CTTCAATTAGTCAACACTCTCGTCGACAACCGCTTAAACGCTGTCCAGCA
CTCTTCACAAGCAATCGCCTCAGCTACACCAACAAACACAAACAATACGC
CCATTCTCTCCGCCGCCCCGACTCCCGCCTTCACGGTACCGACTGCAATC
CCAGCAAAAATCTTAAAGCAGATCAAAAACGGTGAGTTTATTGATTTTGA
TTATCTTCTTCCAACAAATGTTGGCAGACCTTCGAATTCATCTGTTTCAC
TGGCTTTCGACGGGGATGGGAATATTTCTTTACAAAGGAATGAGTTGTCA
TCTTCTCACAATCAACACCTGTCTAAGAAGGCCAAAGTCATGGACCTTAA
TTCCTGGTTGATGGCTTGGTCAAGATATTTTCAGGCCTCATTAGTCTACC
ATCCGCACTTGATTCATCAGCTCTTAGCCTATCAAATATACATTGCTCAA
CTGGCAAATGATTACACTTTCTTTGGTTGGTACACCTACGATAAAGCCTT
CCGCACTTTGATGGCCAACAATCCTTCTGCAAGGTGGGATATCGCAAATG
TAACTTTATATAATATACACTTGCAGGGGCAAAGACAGCCTAGCCAATGT
TACCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060295-exon-scaffold_339-1491911889:244561..246287 | TCONS_00060295-exon-scaffold_339-1491911889:244561..246287 | Clytia hemisphaerica | exon |
| TCONS_00060295-exon-scaffold_339-1510915933:244561..246287 | TCONS_00060295-exon-scaffold_339-1510915933:244561..246287 | Clytia hemisphaerica | exon |
| TCONS_00060295-exon-scaffold_339-1575043694:244561..246287 | TCONS_00060295-exon-scaffold_339-1575043694:244561..246287 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:244561..246287 . |
Blast
The following BLAST results are available for this feature:
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