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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060244 ID=TCONS_00060244|Name=TCONS_00060244|organism=Clytia hemisphaerica|type=transcript|length=1883bp
TTTCAGgttagaaatcagaaaaaagtagcaaaaaatacaaaataaaacat
CGAGCATTGGAAATAATTTTATCGCAGCGAACGCCATGAAACGGAGAAGT
GTTTACAAGACGACTACAGAACCAGAAAGAATTCCTTGGcataaatgttt
gaaaaatggagTTCTCACTTTATTCGATCGTATATATTGGGCATTAAATC
AACCCCTTTCATTAAAGATCGCGGTAATCGGGCCGGAAAACTGCGGAAAG
ACAAGTATTATAAGACGCTTCGCTGGAGATATATTTTACGATGAAAAAAT
GAACCCGGAAGACCCTACTTTCCGTTTCACTAGTCTCATGAAAATACGGA
ACTGTTCACGACGGTTTAATGTGAAGGTTATAGAGGTTGATCGCAAGGAT
ATTTCGAAGCAGAATTACGATGAGTTATTACAGACATCTGCCGGTATTCT
GTTAGTATATTCTGTAGAGGAACCGGAAAAATACGGAGAGGTCCTTTCCG
TTATTGATAGACTGCATGTCCGGAGGAAACCAAAGGATAACAAGAAGGAA
CATCAGGTTATAGTTGCTTTAGGGAACAAAACGGAAATTTGTACGAACTT
GGAACAAGTCAATCAGAACACCGAAATGAAAGATGAACTACAAACAAAAG
GGGTTGATTATTTCAGTGTTTCTGCCAAGTCGAATTGGGGAATTTCTGAA
GCAGTAAATGAACTAATTGAACAAAGTGCGCGTAATAAGGTGATGCGATT
TTcgagtaaaaagaaaaataaatcgaAAAGACCAAAGAAAAATGGGAAAG
GTCTTTTATCTGAAGATGAGAATGGAGTCACTTTTGATGAACTATAATCC
ACGCAATGTAAAGAGGGCTTTAATTAGTTTCCTTCACGCATGGTCCTAGA
AGAAGACGggtgaatttttttcagattttttttatttttcataattttta
gtaCCGAATTTACCCAATTATTTTCTAGgatttttttccacttttttgac
ttttggcattgaaatttgttttgtatccgtttttttgttttaattttcaa
gttttattttttcgtgTTTGTTGAGTATGGATGGAATTGAACCTTATGCT
GCAAGGTTCCTTTTCGAATCTAACGTGTTTAGCATCATTTTAACCGTGTC
ATACTTTTAGGGGAAGAGGatcttttgccatttttttgcGCAAAATTTTC
TACTCGTACATACAACTAACTAAGCCTGGCTTAAGTTTGGAatggttttg
attttgtttctttctatctttatatttctttatgaattagttttttatca
caaaatttttcattgcACAACTTTTTGGAATTAGTTTTAGTATTTTCAGT
TTTGgttaattcttttttctttatttgggcaaagtttatttaaaactttt
caatcctaatcaaaaatgcaaaaaataccTGTCAGACTATATTTCATAGG
GATCATTTGTCGTCCCTCTCTCTCAAACCATACGAACGCTTGTAAACGCa
ggaaaaaattaaacaaatatcTTCCATGCGAATTTCTGAGACATCAAtca
tagaaaattgaattcacCAGGTGTGTTGTTTTCCAATATGTGCAAATTTG
AGTACATAAGACaaatatataaatatttatttgaGACCCATTTTGAAGTT
GTAGGGCTATAATTACCTTCTTTTCGTGGGGTAAGAAGGCTcaattattt
gaaactttgtaaatagtaaagtatatatagaaattatttgaaagtcattt
tcatttcaaaatgaaagaaaaatgaactCGTTGTTGAATTCATCAGAAAA
ACTaactttttcagcttttttttaaggccaggccaatttaatttgttgtt
ttacgggccaagctgcCCAAAAATTAGGGTCGG Run BLAST on NCBI transcript from alignment at scaffold_339:216856..218738+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060244 ID=TCONS_00060244|Name=TCONS_00060244|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at scaffold_339:216856..218738+ (Clytia hemisphaerica)
TTTCAGgttagaaatcagaaaaaagtagcaaaaaatacaaaataaaacat
CGAGCATTGGAAATAATTTTATCGCAGCGAACGCCATGAAACGGAGAAGT
GTTTACAAGACGACTACAGAACCAGAAAGAATTCCTTGGcataaatgttt
gaaaaatggagTTCTCACTTTATTCGATCGTATATATTGGGCATTAAATC
AACCCCTTTCATTAAAGATCGCGGTAATCGGGCCGGAAAACTGCGGAAAG
ACAAGTATTATAAGACGCTTCGCTGGAGATATATTTTACGATGAAAAAAT
GAACCCGGAAGACCCTACTTTCCGTTTCACTAGTCTCATGAAAATACGGA
ACTGTTCACGACGGTTTAATGTGAAGGTTATAGAGGTTGATCGCAAGGAT
ATTTCGAAGCAGAATTACGATGAGTTATTACAGACATCTGCCGGTATTCT
GTTAGTATATTCTGTAGAGGAACCGGAAAAATACGGAGAGGTCCTTTCCG
TTATTGATAGACTGCATGTCCGGAGGAAACCAAAGGATAACAAGAAGGAA
CATCAGGTTATAGTTGCTTTAGGGAACAAAACGGAAATTTGTACGAACTT
GGAACAAGTCAATCAGAACACCGAAATGAAAGATGAACTACAAACAAAAG
GGGTTGATTATTTCAGTGTTTCTGCCAAGTCGAATTGGGGAATTTCTGAA
GCAGTAAATGAACTAATTGAACAAAGTGCGCGTAATAAGGTGATGCGATT
TTcgagtaaaaagaaaaataaatcgaAAAGACCAAAGAAAAATGGGAAAG
GTCTTTTATCTGAAGATGAGAATGGAGTCACTTTTGATGAACTATAATCC
ACGCAATGTAAAGAGGGCTTTAATTAGTTTCCTTCACGCATGGTCCTAGA
AGAAGACGggtgaatttttttcagattttttttatttttcataattttta
gtaCCGAATTTACCCAATTATTTTCTAGgatttttttccacttttttgac
ttttggcattgaaatttgttttgtatccgtttttttgttttaattttcaa
gttttattttttcgtgTTTGTTGAGTATGGATGGAATTGAACCTTATGCT
GCAAGGTTCCTTTTCGAATCTAACGTGTTTAGCATCATTTTAACCGTGTC
ATACTTTTAGGGGAAGAGGatcttttgccatttttttgcGCAAAATTTTC
TACTCGTACATACAACTAACTAAGCCTGGCTTAAGTTTGGAatggttttg
attttgtttctttctatctttatatttctttatgaattagttttttatca
caaaatttttcattgcACAACTTTTTGGAATTAGTTTTAGTATTTTCAGT
TTTGgttaattcttttttctttatttgggcaaagtttatttaaaactttt
caatcctaatcaaaaatgcaaaaaataccTGTCAGACTATATTTCATAGG
GATCATTTGTCGTCCCTCTCTCTCAAACCATACGAACGCTTGTAAACGCa
ggaaaaaattaaacaaatatcTTCCATGCGAATTTCTGAGACATCAAtca
tagaaaattgaattcacCAGGTGTGTTGTTTTCCAATATGTGCAAATTTG
AGTACATAAGACaaatatataaatatttatttgaGACCCATTTTGAAGTT
GTAGGGCTATAATTACCTTCTTTTCGTGGGGTAAGAAGGCTcaattattt
gaaactttgtaaatagtaaagtatatatagaaattatttgaaagtcattt
tcatttcaaaatgaaagaaaaatgaactCGTTGTTGAATTCATCAGAAAA
ACTaactttttcagcttttttttaaggccaggccaatttaatttgttgtt
ttacgggccaagctgcCCAAAAATTAGGGTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060244-exon-scaffold_339-1491911889:216856..218738 | TCONS_00060244-exon-scaffold_339-1491911889:216856..218738 | Clytia hemisphaerica | exon |
| TCONS_00060244-exon-scaffold_339-1510915933:216856..218738 | TCONS_00060244-exon-scaffold_339-1510915933:216856..218738 | Clytia hemisphaerica | exon |
| TCONS_00060244-exon-scaffold_339-1575043694:216856..218738 | TCONS_00060244-exon-scaffold_339-1575043694:216856..218738 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:216856..218738 + |
Blast
The following BLAST results are available for this feature:
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