|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060234 ID=TCONS_00060234|Name=TCONS_00060234|organism=Clytia hemisphaerica|type=transcript|length=2305bp
gaaattttgaccgttttttgaccatttttggtcaacgagtgatccaagaa
cctccaaatccTGGCCTttctttacttgattctgtcctctagcgaattga
tttgaagttttactatTGGGCACCTTTCCGTCATTCAGTCAGGTCTGCGC
ATTGAGTATGCAAAAGTGCTATACACTCTTTttcctttataagaacaatt
ttattaaaaaatacattttaaaacaaTTCGACAAGCTTGCAATGTGTATG
CGAAATCGTCGGCCTTTACAATACGTATACGCTAGTTCTGAATATGACAG
TATTTCCATAAACATTAGACGTTTTATATAGGGTTATAACATGGTGTATA
AAATACTACTACGTATTTCAAATTACATCAGACATATAACTAGGATGAGC
AATTTTGTTTAGTTTCACTGTTTTCATATATATTTCACTGTTTTCCCTTG
TCTTTACGAGACAGTGGCTCTACTAGCGAAGGACATGGGGTTTTGTGTAT
TGAAAAGGTCGACGATTTCGCTTGCCCATAAATTGCGAGCTTGCCAACAA
TTCTCAGCCTGAAGTTGCTCAATCATAATTAAAATAGTGTTAAAGAGTaa
atacaaatcaaaaaaatctaaagtcCAATTTGAGATAATAACAGCGGAGC
CTCAAAAAATACTTGTTATGAAAAATAGTCTATACCAGTAGTTTTGTGGA
TATATTTGTGTCAGTTCTTTAGGAGTAATAATTTCATGTTTCCTTCAAGT
TGTTTACAGAGTGACCTATTAAAAATCAACCATAAAAATACTACTATATT
CAAAGGATCTGAGCAATTTTTTATCGGAAATTTTGTATCAAGTTGTTCAT
TTCGATGTTATGTTACTGCAAGCTCGAGCAATCTTCTTATTCTCGAGTAG
CATGATCGTTTTCTTTCTCTTTGTCTTCACCAACAGTTGGCCNCAAGCTC
GAGCTATCTTCTTATTCTCGAGTAGCATGATCGTTTTCTTTCTCTTTGTC
TTCACCAACAGTTGGCCGTTTATGAATGACCTTGATACCAACATAAATCA
TCAATTCAAACAAAGACAGGATagaaaacccacaaaacaaaccAATTGTC
CCTCCAACTATACCTAACAATTCTTCAAGTGTAAACAAGGCCTTCTCCTG
TTGTTGGATGTATGAACCAGGCTGTACCAGAATGAGATCTaaaccaaaat
gaaaaataattttgccatGCGTGTCGATTCTTTGAATAAGGTCTGGTTAT
GATTTGAACATCATGAGATACTTGATGGCAGGGTTGGCGGCATATTACAG
GTTGGTTgtattttgtgtatttttttaaacattgtttGATTGTGAGAACT
GTCCGATTACGTTTTTGATGTTTCTCATTGATATTCTGAGGAATATATTT
GGAACAAAAATCAAAGGTGTCTCCACAGGCTTTAAAACTTTCGACACATC
TAACACTCTCTGCACATGCTTGTGTGCTGTATGCTCCAGGAAAAATATTG
AGCTGGCTCCCTTCTTCCTCTGTGATGCACCGTGACGGATAAGGGGCCTC
CAAGCGTtttgttttgactgttttttGAATACGTATATCAGTGTCTTGAA
GATGCGAAAGTCGGACGCCGCCTCTTCGTTCAGCAAACGGTTTTTCTTCT
CGCTCGtgaataaaaatttccaaattttttatttcgattctTGGTTTGAA
AGAGTAACTAATATAATCTTTGGTAATTTCGGTGTTTTTGTTGATTGGGC
CATTGAATTGAACACAATTAGTGAAATTTGCAATGGGCCTCCATAAGAGT
AACTCGGTCATTGCATCACAGTCACCTTTACATCTTAATTCAAACAGATG
ACCGAATACTACAAAttcaaatgtaaatttatgcaaaaggACCTCTTTTT
TAGCTTCCCCATTTTCTTGACAAGGATCTCCGTCAATATTGTTTAGAGCC
GTATATTTTGCGACTGGGCGTTTACAATATAAAAGTTTGGAACGATGTTC
GTTTGTGCAAAGTGTGACAGTCGGGAAGCCAACTTCATTATCAATAACTT
TGTTTTCATCCATGAAGGTTTCCTTGTTAAAATAACTTTCAACTTGTTTT
CGGATGAGAAAAATTGCTACACCCAAACTTAAAAGGAGATTGATAAGCCA
GAATATTTGTTCCAATTTGGTACCGTGAAAAACAAGCGATAGACCGTGTA
TAGCGAACGATTCGGAATATTCCCGTTTCTTCTTTTGTAGGATTTTGGAT
CGCGTTATTGACTTTTTGAGGGTGGGTAGCATCACCATTTCTAaggacaa
aaaag Run BLAST on NCBI transcript from alignment at scaffold_339:97060..99364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060234 ID=TCONS_00060234|Name=TCONS_00060234|organism=Clytia hemisphaerica|type=transcript|length=2305bp|location=Sequence derived from alignment at scaffold_339:97060..99364+ (Clytia hemisphaerica)
gaaattttgaccgttttttgaccatttttggtcaacgagtgatccaagaa
cctccaaatccTGGCCTttctttacttgattctgtcctctagcgaattga
tttgaagttttactatTGGGCACCTTTCCGTCATTCAGTCAGGTCTGCGC
ATTGAGTATGCAAAAGTGCTATACACTCTTTttcctttataagaacaatt
ttattaaaaaatacattttaaaacaaTTCGACAAGCTTGCAATGTGTATG
CGAAATCGTCGGCCTTTACAATACGTATACGCTAGTTCTGAATATGACAG
TATTTCCATAAACATTAGACGTTTTATATAGGGTTATAACATGGTGTATA
AAATACTACTACGTATTTCAAATTACATCAGACATATAACTAGGATGAGC
AATTTTGTTTAGTTTCACTGTTTTCATATATATTTCACTGTTTTCCCTTG
TCTTTACGAGACAGTGGCTCTACTAGCGAAGGACATGGGGTTTTGTGTAT
TGAAAAGGTCGACGATTTCGCTTGCCCATAAATTGCGAGCTTGCCAACAA
TTCTCAGCCTGAAGTTGCTCAATCATAATTAAAATAGTGTTAAAGAGTaa
atacaaatcaaaaaaatctaaagtcCAATTTGAGATAATAACAGCGGAGC
CTCAAAAAATACTTGTTATGAAAAATAGTCTATACCAGTAGTTTTGTGGA
TATATTTGTGTCAGTTCTTTAGGAGTAATAATTTCATGTTTCCTTCAAGT
TGTTTACAGAGTGACCTATTAAAAATCAACCATAAAAATACTACTATATT
CAAAGGATCTGAGCAATTTTTTATCGGAAATTTTGTATCAAGTTGTTCAT
TTCGATGTTATGTTACTGCAAGCTCGAGCAATCTTCTTATTCTCGAGTAG
CATGATCGTTTTCTTTCTCTTTGTCTTCACCAACAGTTGGCCNCAAGCTC
GAGCTATCTTCTTATTCTCGAGTAGCATGATCGTTTTCTTTCTCTTTGTC
TTCACCAACAGTTGGCCGTTTATGAATGACCTTGATACCAACATAAATCA
TCAATTCAAACAAAGACAGGATagaaaacccacaaaacaaaccAATTGTC
CCTCCAACTATACCTAACAATTCTTCAAGTGTAAACAAGGCCTTCTCCTG
TTGTTGGATGTATGAACCAGGCTGTACCAGAATGAGATCTaaaccaaaat
gaaaaataattttgccatGCGTGTCGATTCTTTGAATAAGGTCTGGTTAT
GATTTGAACATCATGAGATACTTGATGGCAGGGTTGGCGGCATATTACAG
GTTGGTTgtattttgtgtatttttttaaacattgtttGATTGTGAGAACT
GTCCGATTACGTTTTTGATGTTTCTCATTGATATTCTGAGGAATATATTT
GGAACAAAAATCAAAGGTGTCTCCACAGGCTTTAAAACTTTCGACACATC
TAACACTCTCTGCACATGCTTGTGTGCTGTATGCTCCAGGAAAAATATTG
AGCTGGCTCCCTTCTTCCTCTGTGATGCACCGTGACGGATAAGGGGCCTC
CAAGCGTtttgttttgactgttttttGAATACGTATATCAGTGTCTTGAA
GATGCGAAAGTCGGACGCCGCCTCTTCGTTCAGCAAACGGTTTTTCTTCT
CGCTCGtgaataaaaatttccaaattttttatttcgattctTGGTTTGAA
AGAGTAACTAATATAATCTTTGGTAATTTCGGTGTTTTTGTTGATTGGGC
CATTGAATTGAACACAATTAGTGAAATTTGCAATGGGCCTCCATAAGAGT
AACTCGGTCATTGCATCACAGTCACCTTTACATCTTAATTCAAACAGATG
ACCGAATACTACAAAttcaaatgtaaatttatgcaaaaggACCTCTTTTT
TAGCTTCCCCATTTTCTTGACAAGGATCTCCGTCAATATTGTTTAGAGCC
GTATATTTTGCGACTGGGCGTTTACAATATAAAAGTTTGGAACGATGTTC
GTTTGTGCAAAGTGTGACAGTCGGGAAGCCAACTTCATTATCAATAACTT
TGTTTTCATCCATGAAGGTTTCCTTGTTAAAATAACTTTCAACTTGTTTT
CGGATGAGAAAAATTGCTACACCCAAACTTAAAAGGAGATTGATAAGCCA
GAATATTTGTTCCAATTTGGTACCGTGAAAAACAAGCGATAGACCGTGTA
TAGCGAACGATTCGGAATATTCCCGTTTCTTCTTTTGTAGGATTTTGGAT
CGCGTTATTGACTTTTTGAGGGTGGGTAGCATCACCATTTCTAaggacaa
aaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060234-exon-scaffold_339-1491911889:97060..99364 | TCONS_00060234-exon-scaffold_339-1491911889:97060..99364 | Clytia hemisphaerica | exon |
| TCONS_00060234-exon-scaffold_339-1510915933:97060..99364 | TCONS_00060234-exon-scaffold_339-1510915933:97060..99364 | Clytia hemisphaerica | exon |
| TCONS_00060234-exon-scaffold_339-1575043694:97060..99364 | TCONS_00060234-exon-scaffold_339-1575043694:97060..99364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_339 | supercontig | scaffold_339:97060..99364 + |
Blast
The following BLAST results are available for this feature:
|
